Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000118

Physical Location & Seq

Genomic Coordinates Forward (+)

16811585 .. 16812812

Gene Structure 1228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g13211.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGAAGATTGAAGAAGGAAAGGTGAAATTGATGATGATCATGACAAGAAAGGTGAAGCTTATGAAGATTTTGATGATGGGTGGACAAGGAGATTTGGACGACGGAATTGAGATTTTGATAAATGGTAATTCAACCAATCCCAATTGGGTGTTTATCAATATCCATGGAACAATTGGATTAATTCTCTTACCGCTGGTACTAGCGAGAGATGCAGAAAGAGTTCGTGAGTGTTGGAATTCTGGGTGCGGACGTCCGCACCGTGCGGATGTCCCTCCTTTCGCCACCGTACGGCACCGGCGAGGGCGCGCCTCCACCCTAGTGGACTCCAGCAGCTTCCCTGACCTTTTTCCATCTCCGGCGAGTCCGCCGAATTCTAGTTTTCCGGCCAGATCACCCAAAACTTCAAACAAAGTCAATCTGGCCGAAAAACTGGAATTCGGCGGACTCGCCGGGAATGGAAAAAGGTCGGGGAAGCTACTGGAGTCCGCTGGGGTGGAGGCGCGCCCTTGCCGGCGCCGTACGGTGGCAAACGGAAGGAAATCCGCACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005801 GO:0005886 GO:0006810 GO:0008150 GO:0008515 GO:0008643 GO:0009705 GO:0012505 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022857 GO:0031090 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 MFS_2

Protein Analysis

184

Amino Acids

19.96

Weight (kDa)

10.42

Isoelectric Point (pI)

58.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica	Prupe.1G448800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata	RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora	Rmu_co8096726.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa	Rorug02G0236500
rosa_samantha	Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	253
AccB1I	GGYRCC	2 cut(s)	291, 513
AccII	CGCG	2 cut(s)	306, 502
AciI	CCGC	8 cut(s)	191, 246, 254, 263, 365, 441, 486, 543
AcoI	YGGCCR	2 cut(s)	384, 420
AcsI	RAATTY	3 cut(s)	235, 370, 434
AcyI	GRCGYC	2 cut(s)	250, 514
AfaI	GTAC	3 cut(s)	198, 288, 520
AfiI	CCNNNNNNNGG	2 cut(s)	288, 523
AgsI	TTSAA	3 cut(s)	11, 132, 405
AleI	CACNNNNGTG	1 cut(s)	317
AluBI	AGCT	3 cut(s)	58, 333, 475
AluI	AGCT	3 cut(s)	58, 333, 475
AoxI	GGCC	2 cut(s)	384, 420
ApeKI	GCWGC	1 cut(s)	330
ApoI	RAATTY	3 cut(s)	235, 370, 434
AscI	GGCGCGCC	2 cut(s)	304, 500
AseI	ATTAAT	1 cut(s)	179
Asp700I	GAANNNNTTC	1 cut(s)	219
AspLEI	GCGC	5 cut(s)	306, 308, 502, 504, 516
AsuC2I	CCSGG	1 cut(s)	451
AsuHPI	GGTGA	3 cut(s)	34, 64, 384
BanI	GGYRCC	2 cut(s)	291, 513
BbvI	GCAGC	1 cut(s)	342
BccI	CCATC	2 cut(s)	70, 358
BceAI	ACGGC	2 cut(s)	305, 501
BclI	TGATCA	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	451
BfaI	CTAG	3 cut(s)	200, 317, 375
BfoI	RGCGCY	1 cut(s)	517
BisI	GCNGC	1 cut(s)	331
BlsI	GCNGC	1 cut(s)	332
Bme1390I	CCNGG	1 cut(s)	451
BmiI	GGNNCC	2 cut(s)	293, 515
BmrFI	CCNGG	1 cut(s)	451
BmsI	GCATC	1 cut(s)	199
BpmI	CTGGAG	2 cut(s)	310, 500
BpuMI	CCSGG	1 cut(s)	451
BsaBI	GATNNNNATC	1 cut(s)	35
BsaHI	GRCGYC	2 cut(s)	250, 514
BsaJI	CCNNGG	1 cut(s)	163
Bsc4I	CCNNNNNNNGG	2 cut(s)	288, 523
Bse118I	RCCGGY	2 cut(s)	294, 510
Bse1I	ACTGG	2 cut(s)	435, 483
Bse8I	GATNNNNATC	1 cut(s)	35
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	271
BseJI	GATNNNNATC	1 cut(s)	35
BseLI	CCNNNNNNNGG	2 cut(s)	288, 523
BseNI	ACTGG	2 cut(s)	435, 483
BsePI	GCGCGC	2 cut(s)	304, 500
BseXI	GCAGC	1 cut(s)	342
BseYI	CCCAGC	1 cut(s)	488
Bsh1236I	CGCG	2 cut(s)	306, 502
BshFI	GGCC	2 cut(s)	386, 422
BshNI	GGYRCC	2 cut(s)	291, 513
BsiSI	CCGG	5 cut(s)	295, 356, 383, 450, 511
BsiWI	CGTACG	2 cut(s)	286, 518
BslFI	GGGAC	1 cut(s)	254
BslI	CCNNNNNNNGG	2 cut(s)	288, 523
BsmFI	GGGAC	1 cut(s)	254
BsnI	GGCC	2 cut(s)	386, 422
Bsp143I	GATC	2 cut(s)	36, 389
Bsp19I	CCATGG	1 cut(s)	163
BspACI	CCGC	8 cut(s)	191, 246, 254, 263, 365, 441, 486, 543
BspANI	GGCC	2 cut(s)	386, 422
BspFNI	CGCG	2 cut(s)	306, 502
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	2 cut(s)	293, 515
BspT107I	GGYRCC	2 cut(s)	291, 513
BsrFI	RCCGGY	2 cut(s)	294, 510
BsrI	ACTGG	2 cut(s)	435, 483
BssAI	RCCGGY	2 cut(s)	294, 510
BssECI	CCNNGG	1 cut(s)	163
BssHII	GCGCGC	2 cut(s)	304, 500
BssMI	GATC	2 cut(s)	36, 389
BssNI	GRCGYC	2 cut(s)	250, 514
BssT1I	CCWWGG	1 cut(s)	163
Bst4CI	ACNGT	4 cut(s)	260, 286, 523, 549
BstACI	GRCGYC	2 cut(s)	250, 514
BstC8I	GCNNGC	3 cut(s)	306, 502, 512
BstDSI	CCRYGG	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	271
BstFNI	CGCG	2 cut(s)	306, 502
BstH2I	RGCGCY	1 cut(s)	517
BstHHI	GCGC	5 cut(s)	306, 308, 502, 504, 516
BstKTI	GATC	2 cut(s)	39, 392
BstMBI	GATC	2 cut(s)	36, 389
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstSCI	CCNGG	1 cut(s)	449
BstUI	CGCG	2 cut(s)	306, 502
BstV1I	GCAGC	1 cut(s)	342
BstXI	CCANNNNNNTGG	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	386, 422
BtgI	CCRYGG	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	271
Cac8I	GCNNGC	3 cut(s)	306, 502, 512
CciI	TCATGA	1 cut(s)	39
CfoI	GCGC	5 cut(s)	306, 308, 502, 504, 516
Cfr10I	RCCGGY	2 cut(s)	294, 510
Csp6I	GTAC	3 cut(s)	197, 287, 519
CviAII	CATG	2 cut(s)	40, 164
CviJI	RGCY	5 cut(s)	58, 333, 386, 422, 475
CviKI_1	RGCY	5 cut(s)	58, 333, 386, 422, 475
CviQI	GTAC	3 cut(s)	197, 287, 519
DinI	GGCGCC	1 cut(s)	515
DpnI	GATC	2 cut(s)	38, 391
DpnII	GATC	2 cut(s)	36, 389
EaeI	YGGCCR	2 cut(s)	384, 420
EciI	GGCGGA	2 cut(s)	354, 456
Eco130I	CCWWGG	1 cut(s)	163
EcoRI	GAATTC	3 cut(s)	235, 370, 434
EcoT14I	CCWWGG	1 cut(s)	163
EgeI	GGCGCC	1 cut(s)	515
EheI	GGCGCC	1 cut(s)	515
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	2 cut(s)	43, 167
FaiI	YATR	3 cut(s)	41, 62, 165
FaqI	GGGAC	1 cut(s)	254
FatI	CATG	2 cut(s)	39, 163
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	1 cut(s)	331
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	1 cut(s)	331
FspBI	CTAG	3 cut(s)	200, 317, 375
GlaI	GCGC	5 cut(s)	305, 307, 501, 503, 515
GluI	GCNGC	1 cut(s)	331
GsaI	CCCAGC	1 cut(s)	492
GsuI	CTGGAG	2 cut(s)	310, 500
HaeII	RGCGCY	1 cut(s)	517
HaeIII	GGCC	2 cut(s)	386, 422
HapII	CCGG	5 cut(s)	295, 356, 383, 450, 511
HhaI	GCGC	5 cut(s)	306, 308, 502, 504, 516
Hin1I	GRCGYC	2 cut(s)	250, 514
Hin1II	CATG	2 cut(s)	43, 167
Hin6I	GCGC	5 cut(s)	304, 306, 500, 502, 514
HinP1I	GCGC	5 cut(s)	304, 306, 500, 502, 514
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	4 cut(s)	323, 361, 444, 482
HpaII	CCGG	5 cut(s)	295, 356, 383, 450, 511
HphI	GGTGA	3 cut(s)	34, 64, 384
Hpy166II	GTNNAC	2 cut(s)	83, 322
Hpy188III	TCNNGA	2 cut(s)	40, 224
Hpy8I	GTNNAC	2 cut(s)	83, 322
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	8, 528
HpyCH4III	ACNGT	4 cut(s)	260, 286, 523, 549
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	212
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpySE526I	ACGT	1 cut(s)	250
Hsp92I	GRCGYC	2 cut(s)	250, 514
Hsp92II	CATG	2 cut(s)	43, 167
HspAI	GCGC	5 cut(s)	304, 306, 500, 502, 514
KasI	GGCGCC	1 cut(s)	513
KroI	GCCGGC	1 cut(s)	510
KroNI	GCCGGC	1 cut(s)	512
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	36, 389
Lsp1109I	GCAGC	1 cut(s)	342
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	3 cut(s)	200, 317, 375
MaeII	ACGT	1 cut(s)	250
MalI	GATC	2 cut(s)	38, 391
MboI	GATC	2 cut(s)	36, 389
MboII	GAAGA	3 cut(s)	16, 23, 76
MfeI	CAATTG	2 cut(s)	142, 171
MluCI	AATT	9 cut(s)	26, 105, 127, 142, 171, 180, 235, 370, 434
Mly113I	GGCGCC	1 cut(s)	514
MlyI	GAGTC	4 cut(s)	317, 370, 438, 491
MmeI	TCCRAC	1 cut(s)	212
MnlI	CCTC	4 cut(s)	282, 293, 319, 490
MroNI	GCCGGC	1 cut(s)	510
MroXI	GAANNNNTTC	1 cut(s)	219
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	1 cut(s)	317
MspA1I	CMGCKG	2 cut(s)	193, 488
MspI	CCGG	5 cut(s)	295, 356, 383, 450, 511
MspR9I	CCNGG	1 cut(s)	451
MunI	CAATTG	2 cut(s)	142, 171
MvnI	CGCG	2 cut(s)	306, 502
MwoI	GCNNNNNNNGC	1 cut(s)	209
NaeI	GCCGGC	1 cut(s)	512
NarI	GGCGCC	1 cut(s)	514
NciI	CCSGG	1 cut(s)	451
NcoI	CCATGG	1 cut(s)	163
NdeII	GATC	2 cut(s)	36, 389
NgoMIV	GCCGGC	1 cut(s)	510
NlaIII	CATG	2 cut(s)	43, 167
NlaIV	GGNNCC	2 cut(s)	293, 515
OliI	CACNNNNGTG	1 cut(s)	317
PagI	TCATGA	1 cut(s)	39
PalAI	GGCGCGCC	2 cut(s)	304, 500
PauI	GCGCGC	2 cut(s)	304, 500
PcsI	WCGNNNNNNNCGW	2 cut(s)	256, 295
PdiI	GCCGGC	1 cut(s)	512
PdmI	GAANNNNTTC	1 cut(s)	219
Pfl23II	CGTACG	2 cut(s)	286, 518
PkrI	GCNGC	1 cut(s)	332
PleI	GAGTC	4 cut(s)	317, 369, 438, 490
PluTI	GGCGCC	1 cut(s)	517
PpsI	GAGTC	4 cut(s)	317, 369, 438, 490
PshBI	ATTAAT	1 cut(s)	179
PspFI	CCCAGC	1 cut(s)	488
PspLI	CGTACG	2 cut(s)	286, 518
PspN4I	GGNNCC	2 cut(s)	293, 515
PteI	GCGCGC	2 cut(s)	304, 500
RsaI	GTAC	3 cut(s)	198, 288, 520
RsaNI	GTAC	3 cut(s)	197, 287, 519
RseI	CAYNNNNRTG	1 cut(s)	317
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	1 cut(s)	331
Sau3AI	GATC	2 cut(s)	36, 389
SchI	GAGTC	4 cut(s)	317, 370, 438, 491
ScrFI	CCNGG	1 cut(s)	451
SetI	ASST	8 cut(s)	24, 54, 60, 253, 335, 345, 467, 477
SfaNI	GCATC	1 cut(s)	199
SfoI	GGCGCC	1 cut(s)	515
SgrAI	CRCCGGYG	1 cut(s)	294
SgsI	GGCGCGCC	2 cut(s)	304, 500
SmiMI	CAYNNNNRTG	1 cut(s)	317
Sse9I	AATT	9 cut(s)	26, 105, 127, 142, 171, 180, 235, 370, 434
SsiI	CCGC	8 cut(s)	191, 246, 254, 263, 365, 441, 486, 543
SspDI	GGCGCC	1 cut(s)	513
SspMI	CTAG	3 cut(s)	200, 317, 375
StyD4I	CCNGG	1 cut(s)	449
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	4 cut(s)	260, 286, 523, 549
TaiI	ACGT	1 cut(s)	253
TasI	AATT	9 cut(s)	26, 105, 127, 142, 171, 180, 235, 370, 434
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TseI	GCWGC	1 cut(s)	330
TspDTI	ATGAA	2 cut(s)	17, 77
TspGWI	ACGGA	2 cut(s)	117, 546
VspI	ATTAAT	1 cut(s)	179
XapI	RAATTY	3 cut(s)	235, 370, 434
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	219
XspI	CTAG	3 cut(s)	200, 317, 375
ZraI	GACGTC	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.