FvH4_3g27201

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Forward (+)
20308947 .. 20317505
8559 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27201.t1

Sequence Viewer

Length: 573 bp
ATGGTGGAAAGTCAAGTCCCACCCGGTTTCAATTCCTGGATCCGCCACTGCAAGAAACTGCAGGTCCCTGTGTCATCTCCTGTCCTCCTAACAGATTCCTTGTCCAATGCAAGAGTCACCTCCAAGATTCTCACGGCCGATGACGTTGTCCGGGTTCCGACGATTGTTGACTGGACTCCAACGAAAGCTAGGAGATCTATTGAGGGTAGTAGGAGTCTATTAGGGGCAGTAGGCGTCTATTGGGGGGCAGTAGGCGTCTATTGGGGGGCAGTAAAGGAGGGTCTACTGGGGGCAGTAGGATGTGGTTTGTCCGAGGGTCTACTGGGGGTAGTAGGAGTGTCTACTGGGGGCGGTAGGATATGGTCTGTCCGGAGGTCTACTGAGGTAGTAGGAGCAGACGACCTGCGTTTTCTCCACCACCAAACTCCGGCCCTTACCAACAACAACAACCAAAGCTTCTCCACTGCCAAACCCCTCACCACGGCAGGTCCTAACACTGCTGCGCGCACTCCGACCTCCACCAACATCGTCGCCGCCACGACGATACCGCTTTCGTCACCGCGTCAACGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

20.04

Weight (kDa)

10.2

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 52, 411, 476
AccI GTMKAC 4 cut(s) 283, 319, 341, 377
AccII CGCG 2 cut(s) 505, 562
AccIII TCCGGA 1 cut(s) 369
AciI CCGC 5 cut(s) 43, 351, 534, 548, 560
AclWI GGATC 2 cut(s) 34, 47
AcoI YGGCCR 1 cut(s) 135
AcyI GRCGYC 2 cut(s) 234, 255
AfiI CCNNNNNNNGG 2 cut(s) 427, 481
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 1 cut(s) 35
AluBI AGCT 2 cut(s) 188, 456
AluI AGCT 2 cut(s) 188, 456
AlwI GGATC 2 cut(s) 34, 47
Aor13HI TCCGGA 1 cut(s) 369
AoxI GGCC 2 cut(s) 135, 429
ApeKI GCWGC 1 cut(s) 500
AspLEI GCGC 2 cut(s) 505, 507
AspS9I GGNCC 3 cut(s) 64, 430, 488
AsuC2I CCSGG 2 cut(s) 24, 152
AsuHPI GGTGA 3 cut(s) 109, 469, 549
AvaII GGWCC 2 cut(s) 64, 488
BamHI GGATCC 1 cut(s) 39
BbvI GCAGC 1 cut(s) 487
BceAI ACGGC 2 cut(s) 150, 498
BciT130I CCWGG 1 cut(s) 37
BcnI CCSGG 2 cut(s) 24, 152
BfaI CTAG 1 cut(s) 189
BfmI CTRYAG 1 cut(s) 59
BfuAI ACCTGC 3 cut(s) 52, 411, 476
BglII AGATCT 1 cut(s) 194
BisI GCNGC 2 cut(s) 501, 534
BlsI GCNGC 2 cut(s) 502, 535
Bme1390I CCNGG 3 cut(s) 24, 37, 152
Bme18I GGWCC 2 cut(s) 64, 488
BmgT120I GGNCC 3 cut(s) 64, 430, 488
BmiI GGNNCC 3 cut(s) 41, 66, 156
BmrFI CCNGG 3 cut(s) 24, 37, 152
BmrI ACTGGG 3 cut(s) 296, 332, 354
BmuI ACTGGG 3 cut(s) 296, 332, 354
BpuMI CCSGG 2 cut(s) 24, 152
BsaHI GRCGYC 2 cut(s) 234, 255
BsaJI CCNNGG 2 cut(s) 312, 480
BsaWI WCCGGW 1 cut(s) 369
Bsc4I CCNNNNNNNGG 2 cut(s) 427, 481
Bse1I ACTGG 4 cut(s) 176, 291, 327, 349
BseAI TCCGGA 1 cut(s) 369
BseBI CCWGG 1 cut(s) 37
BseDI CCNNGG 2 cut(s) 312, 480
BseGI GGATG 1 cut(s) 305
BseLI CCNNNNNNNGG 2 cut(s) 427, 481
BseMII CTCAG 1 cut(s) 372
BseNI ACTGG 4 cut(s) 176, 291, 327, 349
BsePI GCGCGC 1 cut(s) 503
BseX3I CGGCCG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 487
Bsh1236I CGCG 2 cut(s) 505, 562
Bsh1285I CGRYCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 137, 431
BsiEI CGRYCG 1 cut(s) 138
BsiSI CCGG 4 cut(s) 24, 151, 370, 428
BslFI GGGAC 2 cut(s) 2, 50
BslI CCNNNNNNNGG 2 cut(s) 427, 481
BsmFI GGGAC 2 cut(s) 2, 50
BsnI GGCC 2 cut(s) 137, 431
Bsp13I TCCGGA 1 cut(s) 369
Bsp143I GATC 2 cut(s) 39, 194
BspACI CCGC 5 cut(s) 43, 351, 534, 548, 560
BspANI GGCC 2 cut(s) 137, 431
BspCNI CTCAG 1 cut(s) 373
BspEI TCCGGA 1 cut(s) 369
BspFNI CGCG 2 cut(s) 505, 562
BspLI GGNNCC 3 cut(s) 41, 66, 156
BspMAI CTGCAG 1 cut(s) 63
BspMI ACCTGC 3 cut(s) 52, 411, 476
BspPI GGATC 2 cut(s) 34, 47
BsrI ACTGG 4 cut(s) 176, 291, 327, 349
BssECI CCNNGG 2 cut(s) 312, 480
BssHII GCGCGC 1 cut(s) 503
BssMI GATC 2 cut(s) 39, 194
BssNI GRCGYC 2 cut(s) 234, 255
Bst2UI CCWGG 1 cut(s) 37
BstACI GRCGYC 2 cut(s) 234, 255
BstC8I GCNNGC 1 cut(s) 505
BstDEI CTNAG 1 cut(s) 381
BstDSI CCRYGG 1 cut(s) 480
BstF5I GGATG 1 cut(s) 305
BstFNI CGCG 2 cut(s) 505, 562
BstHHI GCGC 2 cut(s) 505, 507
BstKTI GATC 2 cut(s) 42, 197
BstMBI GATC 2 cut(s) 39, 194
BstMCI CGRYCG 1 cut(s) 138
BstNI CCWGG 1 cut(s) 37
BstSCI CCNGG 3 cut(s) 22, 35, 150
BstSFI CTRYAG 1 cut(s) 59
BstUI CGCG 2 cut(s) 505, 562
BstV1I GCAGC 1 cut(s) 487
BstX2I RGATCY 2 cut(s) 39, 194
BstYI RGATCY 2 cut(s) 39, 194
BstZI CGGCCG 1 cut(s) 135
BsuRI GGCC 2 cut(s) 137, 431
BtgI CCRYGG 1 cut(s) 480
BtsCI GGATG 1 cut(s) 305
BtsI GCAGTG 3 cut(s) 46, 462, 495
BtsIMutI CAGTG 3 cut(s) 46, 462, 495
BveI ACCTGC 3 cut(s) 52, 411, 476
Cac8I GCNNGC 1 cut(s) 505
CfoI GCGC 2 cut(s) 505, 507
Cfr13I GGNCC 3 cut(s) 64, 430, 488
CseI GACGC 3 cut(s) 223, 244, 551
CviJI RGCY 4 cut(s) 137, 188, 431, 456
CviKI_1 RGCY 4 cut(s) 137, 188, 431, 456
DdeI CTNAG 1 cut(s) 381
DpnI GATC 2 cut(s) 41, 196
DpnII GATC 2 cut(s) 39, 194
EaeI YGGCCR 1 cut(s) 135
EagI CGGCCG 1 cut(s) 135
EciI GGCGGA 1 cut(s) 32
EclXI CGGCCG 1 cut(s) 135
Eco47I GGWCC 2 cut(s) 64, 488
Eco52I CGGCCG 1 cut(s) 135
EcoO109I RGGNCCY 2 cut(s) 64, 488
EcoRII CCWGG 1 cut(s) 35
FaiI YATR 1 cut(s) 361
FaqI GGGAC 2 cut(s) 2, 50
FblI GTMKAC 4 cut(s) 283, 319, 341, 377
Fnu4HI GCNGC 2 cut(s) 501, 534
FokI GGATG 1 cut(s) 312
Fsp4HI GCNGC 2 cut(s) 501, 534
FspBI CTAG 1 cut(s) 189
GlaI GCGC 2 cut(s) 504, 506
GluI GCNGC 2 cut(s) 501, 534
HaeIII GGCC 2 cut(s) 137, 431
HapII CCGG 4 cut(s) 24, 151, 370, 428
HgaI GACGC 3 cut(s) 223, 244, 551
HhaI GCGC 2 cut(s) 505, 507
Hin1I GRCGYC 2 cut(s) 234, 255
Hin6I GCGC 2 cut(s) 503, 505
HinP1I GCGC 2 cut(s) 503, 505
HincII GTYRAC 2 cut(s) 169, 566
HindII GTYRAC 2 cut(s) 169, 566
HindIII AAGCTT 1 cut(s) 454
HinfI GANTC 5 cut(s) 95, 114, 127, 175, 214
HpaII CCGG 4 cut(s) 24, 151, 370, 428
HphI GGTGA 3 cut(s) 109, 469, 549
Hpy166II GTNNAC 6 cut(s) 169, 284, 320, 342, 378, 566
Hpy188I TCNGA 3 cut(s) 159, 313, 513
Hpy188III TCNNGA 1 cut(s) 370
Hpy8I GTNNAC 6 cut(s) 169, 284, 320, 342, 378, 566
Hpy99I CGWCG 3 cut(s) 163, 533, 544
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 3 cut(s) 51, 61, 110
HpyF3I CTNAG 1 cut(s) 381
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 2 cut(s) 234, 255
HspAI GCGC 2 cut(s) 503, 505
Kpn2I TCCGGA 1 cut(s) 369
Kzo9I GATC 2 cut(s) 39, 194
LmnI GCTCC 1 cut(s) 392
Lsp1109I GCAGC 1 cut(s) 487
MaeI CTAG 1 cut(s) 189
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 115, 555
MalI GATC 2 cut(s) 41, 196
MboI GATC 2 cut(s) 39, 194
MflI RGATCY 2 cut(s) 39, 194
MluCI AATT 1 cut(s) 31
MlyI GAGTC 3 cut(s) 123, 169, 223
MmeI TCCRAC 3 cut(s) 182, 203, 536
MnlI CCTC 9 cut(s) 95, 130, 196, 271, 307, 366, 376, 485, 526
MroI TCCGGA 1 cut(s) 369
MspI CCGG 4 cut(s) 24, 151, 370, 428
MspR9I CCNGG 3 cut(s) 24, 37, 152
MvaI CCWGG 1 cut(s) 37
MvnI CGCG 2 cut(s) 505, 562
NciI CCSGG 2 cut(s) 24, 152
NdeII GATC 2 cut(s) 39, 194
NlaIV GGNNCC 3 cut(s) 41, 66, 156
NmuCI GTSAC 2 cut(s) 115, 555
PauI GCGCGC 1 cut(s) 503
PfeI GAWTC 2 cut(s) 95, 127
PflFI GACNNNGTC 1 cut(s) 146
PfoI TCCNGGA 1 cut(s) 35
PkrI GCNGC 2 cut(s) 502, 535
PleI GAGTC 3 cut(s) 122, 169, 222
PpsI GAGTC 3 cut(s) 122, 169, 222
PpuMI RGGWCCY 2 cut(s) 64, 488
Psp5II RGGWCCY 2 cut(s) 64, 488
Psp6I CCWGG 1 cut(s) 35
PspGI CCWGG 1 cut(s) 35
PspN4I GGNNCC 3 cut(s) 41, 66, 156
PspPI GGNCC 3 cut(s) 64, 430, 488
PspPPI RGGWCCY 2 cut(s) 64, 488
PstI CTGCAG 1 cut(s) 63
PsuI RGATCY 2 cut(s) 39, 194
PsyI GACNNNGTC 1 cut(s) 146
PteI GCGCGC 1 cut(s) 503
SatI GCNGC 2 cut(s) 501, 534
Sau3AI GATC 2 cut(s) 39, 194
Sau96I GGNCC 3 cut(s) 64, 430, 488
SchI GAGTC 3 cut(s) 123, 169, 223
ScrFI CCNGG 3 cut(s) 24, 37, 152
SfcI CTRYAG 1 cut(s) 59
SinI GGWCC 2 cut(s) 64, 488
Sse9I AATT 1 cut(s) 31
SsiI CCGC 5 cut(s) 43, 351, 534, 548, 560
SspMI CTAG 1 cut(s) 189
StyD4I CCNGG 3 cut(s) 22, 35, 150
TaiI ACGT 1 cut(s) 147
TasI AATT 1 cut(s) 31
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 2 cut(s) 95, 127
TscAI CASTG 3 cut(s) 53, 469, 502
TseFI GTSAC 2 cut(s) 115, 555
TseI GCWGC 1 cut(s) 500
Tsp45I GTSAC 2 cut(s) 115, 555
TspRI CASTG 3 cut(s) 53, 469, 502
Tth111I GACNNNGTC 1 cut(s) 146
VpaK11BI GGWCC 2 cut(s) 64, 488
XmiI GTMKAC 4 cut(s) 283, 319, 341, 377
XspI CTAG 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.