FvH4_3g23752

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Reverse (-)
16824650 .. 16832625
7976 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g23752.t1

Sequence Viewer

Length: 1149 bp
ATGGATCTTGCAGCCTTGGCTAAAACAATTGAAGGCTTAGCCGCTCAAATTGGTCATCTTGAGACCAGAATACAGGATCAAGCAGTTGCTTCTGAGCAACGTTTGGCTGCAATTGAAGCTTCTATCCAGAATGAAGAAGAGAGTGTTGGTGGAAGATCAAGGATGCAGTCTAGGAGGAATGGTCGCAGGCAGGCTGTTCGAAACAACAATGGGCAAGATGGACATGATCTTGAGGAAAAAGCACTGAAGTCTATCAAAGTTGAAGCTCCAAACTTTGATGGCCAGCTGAATGCGAAGGTGTGTCTAGATTGGATATCAGACATGGACCACTATTTTGACTGGTACGAGTTGTCTGAAACTCGAAGGGTGCGGTTTGCAAAGATGAAGTTGGTGGGCAAAGCTAGAGAATGGTGGAGTGGTGTGGAAAGGCGAGCTGCAAGAGCCGGTGATGAACCTATCACTCATTGGGAGGAGATGAAAGAAAGGCTGAAGGAGAAGTACGTTCCTTTGGCTTACAAAGAGCGCTTGCTGGACCAATGGCAATCTCTTCGTCAAGGGAACATGACAGCTGCTGAGTATATTGATAAGTTTGAAGAATTTATGGTGAGATGCAACATAAATGAAGATCCTTCTGTGACACTCGCTCGTTTCAGAACCGGCCTTCGTTCAGAACTTCAGAGGGAGCTAATTCCTCATGAAGTATATTCATTGGAGCGAGCATACCAGATAGTGCTGGAATTGGAGTGCTACTTGAAGACTCCTACAACTGTGCATAGCCGATCTGACCAGGAAAATCTTGAATTTTGTCCCAGCTCATCGGGAACAGCACCATCTCCATTTGTCAATAGCTCCAGTACTGCCAATTCATTGGTGAAAGCTGATACAGGAAAGGGAGTACAATCTGGTGTTCGAGGAGGGGGATCTGTAAAGTGCTACAAGTGTCTAGGCCATGGTCACTATGCTGGCCAATGCCCAACCAAAGAGAAACCTCGTAGTCTGTTTGCAGCAAGCACAGGAAAAGAGGCTCGAGAGGAATTGGAGGAAGAAGTTTATATCCCTGAAATTCCTGCCGTTGATGATGACTTGGAGGATGAACCTATTGCCCAAATTCAACCAAGAACGGCGGTGGTGAGCTCCTTCATGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag zf-CCHC

Protein Analysis

383

Amino Acids

43.18

Weight (kDa)

5.57

Isoelectric Point (pI)

54.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 88 - 254 1.4e-08 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 125 - 222 2.1e-19 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 44
AciI CCGC 3 cut(s) 42, 370, 1124
AclI AACGTT 1 cut(s) 100
AclWI GGATC 4 cut(s) 12, 84, 620, 928
AcoI YGGCCR 2 cut(s) 280, 964
AcsI RAATTY 4 cut(s) 596, 800, 1062, 1107
AcuI CTGAAG 3 cut(s) 266, 509, 659
AfaI GTAC 4 cut(s) 344, 500, 856, 897
AfeI AGCGCT 1 cut(s) 524
AgsI TTSAA 7 cut(s) 32, 116, 263, 593, 754, 800, 1112
AjnI CCWGG 1 cut(s) 786
AjuI GAANNNNNNNTTGG 2 cut(s) 129, 161
Alw21I GWGCWC 1 cut(s) 1136
Alw26I GTCTC 1 cut(s) 56
AlwI GGATC 4 cut(s) 12, 84, 620, 928
AlwNI CAGNNNCTG 1 cut(s) 572
Ama87I CYCGRG 1 cut(s) 1026
Aor51HI AGCGCT 1 cut(s) 524
AoxI GGCC 4 cut(s) 280, 658, 946, 964
ApeKI GCWGC 5 cut(s) 11, 107, 434, 569, 1004
ApoI RAATTY 4 cut(s) 596, 800, 1062, 1107
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 2 cut(s) 325, 532
AsuHPI GGTGA 4 cut(s) 458, 616, 883, 1141
AsuII TTCGAA 1 cut(s) 199
AvaI CYCGRG 1 cut(s) 1026
AvaII GGWCC 2 cut(s) 325, 532
BalI TGGCCA 2 cut(s) 282, 966
BanII GRGCYC 1 cut(s) 1136
BarI GAAGNNNNNNTAC 2 cut(s) 482, 514
BbsI GAAGAC 1 cut(s) 761
Bbv12I GWGCWC 1 cut(s) 1136
BbvI GCAGC 5 cut(s) 23, 94, 421, 556, 1016
BccI CCATC 3 cut(s) 212, 272, 838
BceAI ACGGC 2 cut(s) 1055, 1137
BcgI CGANNNNNNTGC 4 cut(s) 179, 213, 530, 564
BciT130I CCWGG 1 cut(s) 788
BcoDI GTCTC 1 cut(s) 56
BfaI CTAG 4 cut(s) 171, 305, 402, 944
BfoI RGCGCY 1 cut(s) 526
BisI GCNGC 6 cut(s) 12, 42, 108, 435, 570, 1005
BlpI GCTNAGC 1 cut(s) 37
BlsI GCNGC 6 cut(s) 13, 43, 109, 436, 571, 1006
BmcAI AGTACT 1 cut(s) 856
Bme1390I CCNGG 1 cut(s) 788
Bme18I GGWCC 2 cut(s) 325, 532
BmeT110I CYCGRG 1 cut(s) 1026
BmgT120I GGNCC 2 cut(s) 325, 532
BmrFI CCNGG 1 cut(s) 788
BmsI GCATC 2 cut(s) 153, 599
BpiI GAAGAC 1 cut(s) 761
BpmI CTGGAG 1 cut(s) 835
Bpu1102I GCTNAGC 1 cut(s) 37
Bpu14I TTCGAA 1 cut(s) 199
BpuEI CTTGAG 2 cut(s) 80, 251
BsaI GGTCTC 1 cut(s) 56
BsaJI CCNNGG 2 cut(s) 15, 949
BsaXI ACNNNNNCTCC 2 cut(s) 166, 196
Bse118I RCCGGY 2 cut(s) 443, 656
Bse1I ACTGG 2 cut(s) 344, 852
BseBI CCWGG 1 cut(s) 788
BseDI CCNNGG 2 cut(s) 15, 949
BseGI GGATG 2 cut(s) 168, 1096
BseMII CTCAG 2 cut(s) 84, 564
BseNI ACTGG 2 cut(s) 344, 852
BseRI GAGGAG 2 cut(s) 485, 927
BseXI GCAGC 5 cut(s) 23, 94, 421, 556, 1016
BseYI CCCAGC 1 cut(s) 809
BshFI GGCC 4 cut(s) 282, 660, 948, 966
BsiHKAI GWGCWC 1 cut(s) 1136
BsiHKCI CYCGRG 1 cut(s) 1026
BsiSI CCGG 2 cut(s) 444, 657
BslFI GGGAC 1 cut(s) 792
BsmAI GTCTC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 792
BsmI GAATGC 1 cut(s) 295
BsnI GGCC 4 cut(s) 282, 660, 948, 966
Bso31I GGTCTC 1 cut(s) 56
BsoBI CYCGRG 1 cut(s) 1026
Bsp119I TTCGAA 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 1136
Bsp143I GATC 7 cut(s) 4, 76, 155, 226, 625, 779, 920
Bsp1720I GCTNAGC 1 cut(s) 37
Bsp19I CCATGG 1 cut(s) 949
BspACI CCGC 3 cut(s) 42, 370, 1124
BspANI GGCC 4 cut(s) 282, 660, 948, 966
BspCNI CTCAG 2 cut(s) 85, 565
BspHI TCATGA 1 cut(s) 694
BspPI GGATC 4 cut(s) 12, 84, 620, 928
BspT104I TTCGAA 1 cut(s) 199
BspTNI GGTCTC 1 cut(s) 56
BsrBI CCGCTC 1 cut(s) 44
BsrFI RCCGGY 2 cut(s) 443, 656
BsrI ACTGG 2 cut(s) 344, 852
BssAI RCCGGY 2 cut(s) 443, 656
BssECI CCNNGG 2 cut(s) 15, 949
BssMI GATC 7 cut(s) 4, 76, 155, 226, 625, 779, 920
BssT1I CCWWGG 2 cut(s) 15, 949
Bst2UI CCWGG 1 cut(s) 788
Bst4CI ACNGT 1 cut(s) 769
Bst6I CTCTTC 2 cut(s) 132, 552
BstBI TTCGAA 1 cut(s) 199
BstC8I GCNNGC 8 cut(s) 188, 192, 284, 432, 527, 717, 964, 1009
BstDEI CTNAG 3 cut(s) 37, 93, 573
BstDSI CCRYGG 1 cut(s) 949
BstF5I GGATG 2 cut(s) 168, 1096
BstH2I RGCGCY 1 cut(s) 526
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 7 cut(s) 7, 79, 158, 229, 628, 782, 923
BstMAI GTCTC 1 cut(s) 56
BstMBI GATC 7 cut(s) 4, 76, 155, 226, 625, 779, 920
BstMWI GCNNNNNNNGC 3 cut(s) 17, 116, 440
BstNI CCWGG 1 cut(s) 788
BstSCI CCNGG 1 cut(s) 786
BstV1I GCAGC 5 cut(s) 23, 94, 421, 556, 1016
BstV2I GAAGAC 1 cut(s) 761
BstX2I RGATCY 3 cut(s) 4, 625, 920
BstXI CCANNNNNNTGG 1 cut(s) 868
BstYI RGATCY 3 cut(s) 4, 625, 920
BsuRI GGCC 4 cut(s) 282, 660, 948, 966
BtgI CCRYGG 1 cut(s) 949
BtsCI GGATG 2 cut(s) 168, 1096
BtsIMutI CAGTG 1 cut(s) 242
Cac8I GCNNGC 8 cut(s) 188, 192, 284, 432, 527, 717, 964, 1009
CaiI CAGNNNCTG 1 cut(s) 572
CciI TCATGA 1 cut(s) 694
CfoI GCGC 1 cut(s) 525
Cfr10I RCCGGY 2 cut(s) 443, 656
Cfr13I GGNCC 2 cut(s) 325, 532
Csp6I GTAC 4 cut(s) 343, 499, 855, 896
CviAII CATG 6 cut(s) 224, 322, 562, 695, 950, 1141
CviQI GTAC 4 cut(s) 343, 499, 855, 896
DdeI CTNAG 3 cut(s) 37, 93, 573
DpnI GATC 7 cut(s) 6, 78, 157, 228, 627, 781, 922
DpnII GATC 7 cut(s) 4, 76, 155, 226, 625, 779, 920
EaeI YGGCCR 2 cut(s) 280, 964
Eam1104I CTCTTC 2 cut(s) 132, 552
EarI CTCTTC 2 cut(s) 132, 552
Ecl136II GAGCTC 1 cut(s) 1134
Eco130I CCWWGG 2 cut(s) 15, 949
Eco24I GRGCYC 1 cut(s) 1136
Eco31I GGTCTC 1 cut(s) 56
Eco32I GATATC 1 cut(s) 315
Eco47I GGWCC 2 cut(s) 325, 532
Eco47III AGCGCT 1 cut(s) 524
Eco53kI GAGCTC 1 cut(s) 1134
Eco57I CTGAAG 3 cut(s) 266, 509, 659
Eco88I CYCGRG 1 cut(s) 1026
EcoICRI GAGCTC 1 cut(s) 1134
EcoRII CCWGG 1 cut(s) 786
EcoRV GATATC 1 cut(s) 315
EcoT14I CCWWGG 2 cut(s) 15, 949
EcoT22I ATGCAT 1 cut(s) 1146
EcoT38I GRGCYC 1 cut(s) 1136
ErhI CCWWGG 2 cut(s) 15, 949
FaeI CATG 6 cut(s) 227, 325, 565, 698, 953, 1144
FaqI GGGAC 1 cut(s) 792
FatI CATG 6 cut(s) 223, 321, 561, 694, 949, 1140
Fnu4HI GCNGC 6 cut(s) 12, 42, 108, 435, 570, 1005
FokI GGATG 2 cut(s) 175, 1103
FriOI GRGCYC 1 cut(s) 1136
Fsp4HI GCNGC 6 cut(s) 12, 42, 108, 435, 570, 1005
FspBI CTAG 4 cut(s) 171, 305, 402, 944
GlaI GCGC 1 cut(s) 524
GluI GCNGC 6 cut(s) 12, 42, 108, 435, 570, 1005
GsaI CCCAGC 1 cut(s) 813
GsuI CTGGAG 1 cut(s) 835
HaeII RGCGCY 1 cut(s) 526
HaeIII GGCC 4 cut(s) 282, 660, 948, 966
HapII CCGG 2 cut(s) 444, 657
HhaI GCGC 1 cut(s) 525
Hin1II CATG 6 cut(s) 227, 325, 565, 698, 953, 1144
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HindIII AAGCTT 1 cut(s) 117
HinfI GANTC 1 cut(s) 757
HpaII CCGG 2 cut(s) 444, 657
HphI GGTGA 4 cut(s) 458, 616, 883, 1141
Hpy188I TCNGA 7 cut(s) 94, 319, 355, 653, 670, 678, 784
Hpy188III TCNNGA 8 cut(s) 59, 127, 230, 305, 695, 797, 819, 1028
HpyAV CCTTC 7 cut(s) 26, 289, 357, 484, 639, 671, 1147
HpyCH4III ACNGT 1 cut(s) 769
HpyCH4IV ACGT 2 cut(s) 100, 501
HpyCH4V TGCA 9 cut(s) 11, 110, 166, 377, 437, 612, 772, 1004, 1144
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 116, 440
HpyF3I CTNAG 3 cut(s) 37, 93, 573
HpySE526I ACGT 2 cut(s) 100, 501
Hsp92II CATG 6 cut(s) 227, 325, 565, 698, 953, 1144
HspAI GCGC 1 cut(s) 523
Kzo9I GATC 7 cut(s) 4, 76, 155, 226, 625, 779, 920
LmnI GCTCC 5 cut(s) 271, 682, 712, 854, 1139
Lsp1109I GCAGC 5 cut(s) 23, 94, 421, 556, 1016
LweI GCATC 2 cut(s) 153, 599
MaeI CTAG 4 cut(s) 171, 305, 402, 944
MaeII ACGT 2 cut(s) 100, 501
MaeIII GTNAC 2 cut(s) 634, 953
MalI GATC 7 cut(s) 6, 78, 157, 228, 627, 781, 922
MbiI CCGCTC 1 cut(s) 44
MboI GATC 7 cut(s) 4, 76, 155, 226, 625, 779, 920
MboII GAAGA 8 cut(s) 146, 149, 165, 539, 605, 635, 766, 1055
MfeI CAATTG 2 cut(s) 27, 111
MflI RGATCY 3 cut(s) 4, 625, 920
MhlI GDGCHC 1 cut(s) 1136
MlsI TGGCCA 2 cut(s) 282, 966
MluNI TGGCCA 2 cut(s) 282, 966
MlyI GAGTC 1 cut(s) 751
Mox20I TGGCCA 2 cut(s) 282, 966
Mph1103I ATGCAT 1 cut(s) 1146
MscI TGGCCA 2 cut(s) 282, 966
MseI TTAA 1 cut(s) 1147
Msp20I TGGCCA 2 cut(s) 282, 966
MspA1I CMGCKG 2 cut(s) 286, 569
MspI CCGG 2 cut(s) 444, 657
MspR9I CCNGG 1 cut(s) 788
MunI CAATTG 2 cut(s) 27, 111
Mva1269I GAATGC 1 cut(s) 295
MvaI CCWGG 1 cut(s) 788
MwoI GCNNNNNNNGC 3 cut(s) 17, 116, 440
NcoI CCATGG 1 cut(s) 949
NdeII GATC 7 cut(s) 4, 76, 155, 226, 625, 779, 920
NlaIII CATG 6 cut(s) 227, 325, 565, 698, 953, 1144
NmuCI GTSAC 2 cut(s) 634, 953
NsiI ATGCAT 1 cut(s) 1146
NspV TTCGAA 1 cut(s) 199
PaeR7I CTCGAG 1 cut(s) 1026
PagI TCATGA 1 cut(s) 694
PctI GAATGC 1 cut(s) 295
PkrI GCNGC 6 cut(s) 13, 43, 109, 436, 571, 1006
PleI GAGTC 1 cut(s) 751
PpsI GAGTC 1 cut(s) 751
Psp124BI GAGCTC 1 cut(s) 1136
Psp1406I AACGTT 1 cut(s) 100
Psp6I CCWGG 1 cut(s) 786
PspFI CCCAGC 1 cut(s) 809
PspGI CCWGG 1 cut(s) 786
PspPI GGNCC 2 cut(s) 325, 532
PstNI CAGNNNCTG 1 cut(s) 572
PsuI RGATCY 3 cut(s) 4, 625, 920
PvuII CAGCTG 2 cut(s) 286, 569
RsaI GTAC 4 cut(s) 344, 500, 856, 897
RsaNI GTAC 4 cut(s) 343, 499, 855, 896
SacI GAGCTC 1 cut(s) 1136
SaqAI TTAA 1 cut(s) 1147
SatI GCNGC 6 cut(s) 12, 42, 108, 435, 570, 1005
Sau3AI GATC 7 cut(s) 4, 76, 155, 226, 625, 779, 920
Sau96I GGNCC 2 cut(s) 325, 532
ScaI AGTACT 1 cut(s) 856
SchI GAGTC 1 cut(s) 751
ScrFI CCNGG 1 cut(s) 788
SduI GDGCHC 1 cut(s) 1136
SfaNI GCATC 2 cut(s) 153, 599
Sfr274I CTCGAG 1 cut(s) 1026
SfuI TTCGAA 1 cut(s) 199
SinI GGWCC 2 cut(s) 325, 532
SlaI CTCGAG 1 cut(s) 1026
SmlI CTYRAG 3 cut(s) 59, 230, 1026
SmoI CTYRAG 3 cut(s) 59, 230, 1026
SsiI CCGC 3 cut(s) 42, 370, 1124
SspMI CTAG 4 cut(s) 171, 305, 402, 944
SstI GAGCTC 1 cut(s) 1136
StyD4I CCNGG 1 cut(s) 786
StyI CCWWGG 2 cut(s) 15, 949
TaaI ACNGT 1 cut(s) 769
TaiI ACGT 2 cut(s) 103, 504
TaqI TCGA 4 cut(s) 199, 361, 910, 1027
TatI WGTACW 2 cut(s) 854, 895
TauI GCSGC 1 cut(s) 44
Tru1I TTAA 1 cut(s) 1147
Tru9I TTAA 1 cut(s) 1147
TscAI CASTG 1 cut(s) 249
TseFI GTSAC 2 cut(s) 634, 953
TseI GCWGC 5 cut(s) 11, 107, 434, 569, 1004
Tsp45I GTSAC 2 cut(s) 634, 953
TspRI CASTG 1 cut(s) 249
VpaK11BI GGWCC 2 cut(s) 325, 532
XapI RAATTY 4 cut(s) 596, 800, 1062, 1107
XbaI TCTAGA 1 cut(s) 304
XhoI CTCGAG 1 cut(s) 1026
XspI CTAG 4 cut(s) 171, 305, 402, 944
ZrmI AGTACT 1 cut(s) 856
Zsp2I ATGCAT 1 cut(s) 1146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.