FvH4_4g08312

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000118
Physical Location & Seq
Reverse (-)
8209887 .. 8211155
1269 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g08312.t1

Sequence Viewer

Length: 369 bp
ATGAAGCGGACGTCCGCAACTATGTTAAAGTGCGGACGTCCCTCCGTTCTTCTTCGTCCGACACCGACGACGGCGCTCCTCCACCTGAGCAGACACCAGCGGCATCTCCGATCATTTTCTCTTGCCGACGAGATCGATTTGAAGGTCTGGACAGCAACCTCCACCCAAAACTTCAGACAAGGTCGATTTTGTCGGCAAACTAGAATTCGGCGGATTCGCCGGGAAGAAAAAGTGATCGGGGACGCATCTGATGTCCAGGCGCGCCGTCTAGAGCTAGTTGCATATAGTGACAAAGTGGTGCCTAAGCTTTGCGGCAGGAATGAAGAAACTTTGGCTGTTAGCCTCGTTGGAATTGATGACCCTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.94

Weight (kDa)

10.56

Isoelectric Point (pI)

47.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 14, 40
AccB1I GGYRCC 1 cut(s) 298
AccII CGCG 1 cut(s) 262
AciI CCGC 6 cut(s) 7, 15, 33, 100, 211, 312
AcsI RAATTY 1 cut(s) 204
AcuI CTGAAG 1 cut(s) 157
AcyI GRCGYC 2 cut(s) 11, 37
AgsI TTSAA 1 cut(s) 142
AjnI CCWGG 1 cut(s) 255
AluBI AGCT 2 cut(s) 274, 307
AluI AGCT 2 cut(s) 274, 307
ApoI RAATTY 1 cut(s) 204
AscI GGCGCGCC 1 cut(s) 260
AspLEI GCGC 3 cut(s) 76, 262, 264
AsuC2I CCSGG 1 cut(s) 221
BanI GGYRCC 1 cut(s) 298
BceAI ACGGC 2 cut(s) 87, 249
BciT130I CCWGG 1 cut(s) 257
BcnI CCSGG 1 cut(s) 221
BfaI CTAG 3 cut(s) 201, 269, 275
BfoI RGCGCY 1 cut(s) 77
BisI GCNGC 2 cut(s) 101, 313
BlsI GCNGC 2 cut(s) 102, 314
Bme1390I CCNGG 2 cut(s) 221, 257
BmiI GGNNCC 1 cut(s) 300
BmrFI CCNGG 2 cut(s) 221, 257
BmsI GCATC 2 cut(s) 112, 254
Bpu10I CCTNAGC 2 cut(s) 86, 303
BpuMI CCSGG 1 cut(s) 221
Bsa29I ATCGAT 1 cut(s) 135
BsaHI GRCGYC 2 cut(s) 11, 37
BseBI CCWGG 1 cut(s) 257
BseCI ATCGAT 1 cut(s) 135
BseMII CTCAG 1 cut(s) 77
BsePI GCGCGC 1 cut(s) 260
BseRI GAGGAG 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 262
BshNI GGYRCC 1 cut(s) 298
BshVI ATCGAT 1 cut(s) 135
BsiSI CCGG 1 cut(s) 220
BslFI GGGAC 2 cut(s) 24, 254
BsmFI GGGAC 2 cut(s) 24, 254
Bsp143I GATC 3 cut(s) 110, 132, 234
BspACI CCGC 6 cut(s) 7, 15, 33, 100, 211, 312
BspCNI CTCAG 1 cut(s) 78
BspDI ATCGAT 1 cut(s) 135
BspFNI CGCG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 300
BspT107I GGYRCC 1 cut(s) 298
BssHII GCGCGC 1 cut(s) 260
BssMI GATC 3 cut(s) 110, 132, 234
BssNI GRCGYC 2 cut(s) 11, 37
Bst2UI CCWGG 1 cut(s) 257
BstACI GRCGYC 2 cut(s) 11, 37
BstC8I GCNNGC 1 cut(s) 262
BstDEI CTNAG 2 cut(s) 86, 303
BstFNI CGCG 1 cut(s) 262
BstH2I RGCGCY 1 cut(s) 77
BstHHI GCGC 3 cut(s) 76, 262, 264
BstKTI GATC 3 cut(s) 113, 135, 237
BstMBI GATC 3 cut(s) 110, 132, 234
BstNI CCWGG 1 cut(s) 257
BstSCI CCNGG 2 cut(s) 219, 255
BstUI CGCG 1 cut(s) 262
Bsu15I ATCGAT 1 cut(s) 135
BsuTUI ATCGAT 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 262
CfoI GCGC 3 cut(s) 76, 262, 264
ClaI ATCGAT 1 cut(s) 135
CseI GACGC 1 cut(s) 251
CviJI RGCY 4 cut(s) 274, 307, 335, 342
CviKI_1 RGCY 4 cut(s) 274, 307, 335, 342
DdeI CTNAG 2 cut(s) 86, 303
DpnI GATC 3 cut(s) 112, 134, 236
DpnII GATC 3 cut(s) 110, 132, 234
EciI GGCGGA 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 157
EcoRI GAATTC 1 cut(s) 204
EcoRII CCWGG 1 cut(s) 255
FaiI YATR 4 cut(s) 23, 283, 285, 367
FaqI GGGAC 2 cut(s) 24, 254
Fnu4HI GCNGC 2 cut(s) 101, 313
Fsp4HI GCNGC 2 cut(s) 101, 313
FspBI CTAG 3 cut(s) 201, 269, 275
GlaI GCGC 3 cut(s) 75, 261, 263
GluI GCNGC 2 cut(s) 101, 313
HaeII RGCGCY 1 cut(s) 77
HapII CCGG 1 cut(s) 220
HgaI GACGC 1 cut(s) 251
HhaI GCGC 3 cut(s) 76, 262, 264
Hin1I GRCGYC 2 cut(s) 11, 37
Hin6I GCGC 3 cut(s) 74, 260, 262
HinP1I GCGC 3 cut(s) 74, 260, 262
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 1 cut(s) 214
HpaII CCGG 1 cut(s) 220
Hpy188I TCNGA 4 cut(s) 60, 110, 176, 250
Hpy188III TCNNGA 2 cut(s) 148, 269
Hpy99I CGWCG 3 cut(s) 70, 73, 131
HpyAV CCTTC 1 cut(s) 136
HpyCH4IV ACGT 2 cut(s) 11, 37
HpyCH4V TGCA 1 cut(s) 281
HpyF3I CTNAG 2 cut(s) 86, 303
HpySE526I ACGT 2 cut(s) 11, 37
Hsp92I GRCGYC 2 cut(s) 11, 37
HspAI GCGC 3 cut(s) 74, 260, 262
Kzo9I GATC 3 cut(s) 110, 132, 234
LmnI GCTCC 1 cut(s) 81
LpnPI CCDG 7 cut(s) 98, 110, 133, 233, 242, 269, 301
LweI GCATC 2 cut(s) 112, 254
MaeI CTAG 3 cut(s) 201, 269, 275
MaeII ACGT 2 cut(s) 11, 37
MaeIII GTNAC 1 cut(s) 287
MalI GATC 3 cut(s) 112, 134, 236
MboI GATC 3 cut(s) 110, 132, 234
MboII GAAGA 4 cut(s) 41, 44, 236, 335
MluCI AATT 2 cut(s) 204, 351
MmeI TCCRAC 2 cut(s) 83, 328
MnlI CCTC 4 cut(s) 52, 89, 169, 353
MseI TTAA 1 cut(s) 26
MspA1I CMGCKG 1 cut(s) 100
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 2 cut(s) 221, 257
MvaI CCWGG 1 cut(s) 257
MvnI CGCG 1 cut(s) 262
NciI CCSGG 1 cut(s) 221
NdeII GATC 3 cut(s) 110, 132, 234
NlaIV GGNNCC 1 cut(s) 300
NmuCI GTSAC 1 cut(s) 287
PalAI GGCGCGCC 1 cut(s) 260
PauI GCGCGC 1 cut(s) 260
PfeI GAWTC 1 cut(s) 214
PflFI GACNNNGTC 1 cut(s) 180
PkrI GCNGC 2 cut(s) 102, 314
Psp6I CCWGG 1 cut(s) 255
PspGI CCWGG 1 cut(s) 255
PspN4I GGNNCC 1 cut(s) 300
PsyI GACNNNGTC 1 cut(s) 180
PteI GCGCGC 1 cut(s) 260
SaqAI TTAA 1 cut(s) 26
SatI GCNGC 2 cut(s) 101, 313
Sau3AI GATC 3 cut(s) 110, 132, 234
ScrFI CCNGG 2 cut(s) 221, 257
SetI ASST 8 cut(s) 14, 40, 87, 147, 161, 184, 276, 309
SfaNI GCATC 2 cut(s) 112, 254
SgsI GGCGCGCC 1 cut(s) 260
Sse9I AATT 2 cut(s) 204, 351
SsiI CCGC 6 cut(s) 7, 15, 33, 100, 211, 312
SspMI CTAG 3 cut(s) 201, 269, 275
StyD4I CCNGG 2 cut(s) 219, 255
TaiI ACGT 2 cut(s) 14, 40
TaqI TCGA 2 cut(s) 135, 184
TasI AATT 2 cut(s) 204, 351
TauI GCSGC 2 cut(s) 103, 315
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
TseFI GTSAC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 2 cut(s) 17, 336
TspGWI ACGGA 1 cut(s) 34
Tth111I GACNNNGTC 1 cut(s) 180
XapI RAATTY 1 cut(s) 204
XbaI TCTAGA 1 cut(s) 268
XspI CTAG 3 cut(s) 201, 269, 275
ZraI GACGTC 2 cut(s) 12, 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.