FvH4_2g20211

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Reverse (-)
17012472 .. 17012885
414 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g20211.t1

Sequence Viewer

Length: 288 bp
ATGACAGAAGATGGCGTCAACGACGGCGTCTCGATCGAGGAGCATCAACATCACCTCTGGCCAGAGAAGAAGTCGGCAACGGGATTAGCTTCGGCGAGTCGTTCGATCTCCTCTCATCGACTAACACACGACGATGATGGTGGAGAGATGTCTAGCGGCGTCATTGACGCCATAACCCAGAGTTCAAAGACCGATACCTCCCTTCGTCTCTGGTCGCCTACTTCGGCGCCGCGCGCTCGTCTCTCGATTGAAGTCGGATTCCAAAACTACGGCAAGCGGGTGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.32

Weight (kDa)

5.89

Isoelectric Point (pI)

60.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 226
AccII CGCG 2 cut(s) 232, 234
AciI CCGC 3 cut(s) 156, 230, 277
AcoI YGGCCR 1 cut(s) 59
AcyI GRCGYC 5 cut(s) 15, 27, 159, 168, 227
AgsI TTSAA 2 cut(s) 186, 251
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
Alw26I GTCTC 3 cut(s) 34, 212, 245
AoxI GGCC 1 cut(s) 59
AspLEI GCGC 3 cut(s) 229, 234, 236
AsuHPI GGTGA 1 cut(s) 44
BalI TGGCCA 1 cut(s) 61
BanI GGYRCC 1 cut(s) 226
BccI CCATC 2 cut(s) 5, 131
BceAI ACGGC 2 cut(s) 40, 286
BcoDI GTCTC 3 cut(s) 34, 212, 245
BfaI CTAG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 230
BisI GCNGC 2 cut(s) 157, 230
BlsI GCNGC 2 cut(s) 158, 231
BmiI GGNNCC 1 cut(s) 228
BmsI GCATC 1 cut(s) 52
BsaHI GRCGYC 5 cut(s) 15, 27, 159, 168, 227
BsePI GCGCGC 1 cut(s) 232
BseRI GAGGAG 2 cut(s) 53, 100
Bsh1236I CGCG 2 cut(s) 232, 234
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 1 cut(s) 61
BshNI GGYRCC 1 cut(s) 226
BsiEI CGRYCG 1 cut(s) 36
BsmAI GTCTC 3 cut(s) 34, 212, 245
BsmBI CGTCTC 3 cut(s) 34, 212, 245
BsnI GGCC 1 cut(s) 61
Bsp143I GATC 2 cut(s) 33, 105
BspACI CCGC 3 cut(s) 156, 230, 277
BspANI GGCC 1 cut(s) 61
BspFNI CGCG 2 cut(s) 232, 234
BspLI GGNNCC 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 226
BssHII GCGCGC 1 cut(s) 232
BssMI GATC 2 cut(s) 33, 105
BssNI GRCGYC 5 cut(s) 15, 27, 159, 168, 227
BstACI GRCGYC 5 cut(s) 15, 27, 159, 168, 227
BstC8I GCNNGC 2 cut(s) 234, 275
BstFNI CGCG 2 cut(s) 232, 234
BstH2I RGCGCY 1 cut(s) 230
BstHHI GCGC 3 cut(s) 229, 234, 236
BstKTI GATC 2 cut(s) 36, 108
BstMAI GTCTC 3 cut(s) 34, 212, 245
BstMBI GATC 2 cut(s) 33, 105
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstUI CGCG 2 cut(s) 232, 234
BsuRI GGCC 1 cut(s) 61
Cac8I GCNNGC 2 cut(s) 234, 275
CfoI GCGC 3 cut(s) 229, 234, 236
CseI GACGC 4 cut(s) 4, 16, 148, 176
CviJI RGCY 2 cut(s) 61, 89
CviKI_1 RGCY 2 cut(s) 61, 89
DinI GGCGCC 1 cut(s) 228
DpnI GATC 2 cut(s) 35, 107
DpnII GATC 2 cut(s) 33, 105
EaeI YGGCCR 1 cut(s) 59
EgeI GGCGCC 1 cut(s) 228
EheI GGCGCC 1 cut(s) 228
Esp3I CGTCTC 3 cut(s) 34, 212, 245
FaiI YATR 1 cut(s) 173
FauI CCCGC 1 cut(s) 270
Fnu4HI GCNGC 2 cut(s) 157, 230
Fsp4HI GCNGC 2 cut(s) 157, 230
FspBI CTAG 1 cut(s) 153
GlaI GCGC 3 cut(s) 228, 233, 235
GluI GCNGC 2 cut(s) 157, 230
HaeII RGCGCY 1 cut(s) 230
HaeIII GGCC 1 cut(s) 61
HgaI GACGC 4 cut(s) 4, 16, 148, 176
HhaI GCGC 3 cut(s) 229, 234, 236
Hin1I GRCGYC 5 cut(s) 15, 27, 159, 168, 227
Hin6I GCGC 3 cut(s) 227, 232, 234
HinP1I GCGC 3 cut(s) 227, 232, 234
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 2 cut(s) 97, 258
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 2 cut(s) 31, 244
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 2 cut(s) 26, 134
HpyAV CCTTC 1 cut(s) 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
Hsp92I GRCGYC 5 cut(s) 15, 27, 159, 168, 227
HspAI GCGC 3 cut(s) 227, 232, 234
KasI GGCGCC 1 cut(s) 226
Kzo9I GATC 2 cut(s) 33, 105
LmnI GCTCC 1 cut(s) 40
LpnPI CCDG 4 cut(s) 43, 75, 191, 196
LweI GCATC 1 cut(s) 52
MaeI CTAG 1 cut(s) 153
MalI GATC 2 cut(s) 35, 107
MboI GATC 2 cut(s) 33, 105
MboII GAAGA 2 cut(s) 20, 79
MlsI TGGCCA 1 cut(s) 61
MluNI TGGCCA 1 cut(s) 61
Mly113I GGCGCC 1 cut(s) 227
MlyI GAGTC 1 cut(s) 106
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 4 cut(s) 31, 65, 121, 208
Mox20I TGGCCA 1 cut(s) 61
MscI TGGCCA 1 cut(s) 61
MslI CAYNNNNRTG 1 cut(s) 132
Msp20I TGGCCA 1 cut(s) 61
MteI GCGCNGCGC 1 cut(s) 230
MvnI CGCG 2 cut(s) 232, 234
MwoI GCNNNNNNNGC 1 cut(s) 233
NarI GGCGCC 1 cut(s) 227
NdeII GATC 2 cut(s) 33, 105
NlaIV GGNNCC 1 cut(s) 228
PauI GCGCGC 1 cut(s) 232
PfeI GAWTC 1 cut(s) 258
PflFI GACNNNGTC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 158, 231
Ple19I CGATCG 1 cut(s) 36
PleI GAGTC 1 cut(s) 105
PluTI GGCGCC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 105
PspN4I GGNNCC 1 cut(s) 228
PsyI GACNNNGTC 1 cut(s) 26
PteI GCGCGC 1 cut(s) 232
PvuI CGATCG 1 cut(s) 36
RseI CAYNNNNRTG 1 cut(s) 132
SatI GCNGC 2 cut(s) 157, 230
Sau3AI GATC 2 cut(s) 33, 105
SchI GAGTC 1 cut(s) 106
SetI ASST 3 cut(s) 57, 91, 200
SfaNI GCATC 1 cut(s) 52
SfoI GGCGCC 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 132
SsiI CCGC 3 cut(s) 156, 230, 277
SspDI GGCGCC 1 cut(s) 226
SspMI CTAG 1 cut(s) 153
TaqI TCGA 5 cut(s) 32, 36, 104, 118, 245
TaqII GACCGA 1 cut(s) 206
TauI GCSGC 2 cut(s) 159, 232
TfiI GAWTC 1 cut(s) 258
Tth111I GACNNNGTC 1 cut(s) 26
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.