FvH4_2g14241

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Reverse (-)
12514688 .. 12515951
1264 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14241.t1

Sequence Viewer

Length: 630 bp
ATGGAGCGCACGTCCGCAAGTGCACACGGAGCTCCGTTCACCACCATCCGGCGCCGACGACAGCGCGCCTCCACCCTAGCGAACTCCAGCAACATCCCCGATCATTTTCTCTCCCCGGCGAGTCCGCCGAAATCCAGTTTTCCGGCGAGATCACCCAAAAATTCAAATAAAGTCGATATATACGGAAACTGGAATTATCTCGCCGGAAACTGGAATTCGGCGGACTCGCCGGGGAGGGAAAGTGATCGGGAACGCTGCTGGAGTTTGCTGGGGGGTCGGCACCCCGTCGTCGGCGCTGGACGGTGGCGAACGGACCTCCCAACGCCTCCATGCATCGCCACGCGTGAGCTGAGGCCGCCGTGTGCAGCTGAGATCTCCCCGAGTCTTCATCCAACTCATTCACCAGCGGTGGAACCTTCCCGAGCTCGCCGTCGAGAATTGCGGAGGCGTATTTGGTTTAGTCGAATCGACAATAGAGATGCAGAAGCTTGGACGCGGTCCTCTGGTTCAGCATGCCGCCAGCAATTGGCTTCATCTCAGCCACGAACTCGTCTTTTTTGTCTTGATAGAGGGCTCTCATCTCACCCTTCTCAGCCTCAATCATACTATGGCATTCTTCCAAACACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

23.41

Weight (kDa)

11.14

Isoelectric Point (pI)

85.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 51, 279
AccB7I CCANNNNNTGG 1 cut(s) 526
AccII CGCG 3 cut(s) 66, 343, 496
AciI CCGC 8 cut(s) 15, 125, 221, 356, 407, 442, 496, 517
AcsI RAATTY 2 cut(s) 160, 214
AcyI GRCGYC 1 cut(s) 52
AfiI CCNNNNNNNGG 4 cut(s) 48, 210, 290, 526
AflIII ACRYGT 2 cut(s) 341, 624
AgsI TTSAA 1 cut(s) 165
AjiI CACGTC 1 cut(s) 12
AluBI AGCT 5 cut(s) 32, 349, 368, 425, 488
AluI AGCT 5 cut(s) 32, 349, 368, 425, 488
Alw21I GWGCWC 3 cut(s) 25, 34, 427
Alw44I GTGCAC 1 cut(s) 21
Ama87I CYCGRG 2 cut(s) 379, 420
AoxI GGCC 1 cut(s) 353
ApaLI GTGCAC 1 cut(s) 21
ApeKI GCWGC 2 cut(s) 255, 365
ApoI RAATTY 2 cut(s) 160, 214
AspLEI GCGC 5 cut(s) 9, 54, 66, 68, 296
AspS9I GGNCC 2 cut(s) 313, 498
AsuC2I CCSGG 2 cut(s) 116, 231
AsuHPI GGTGA 4 cut(s) 31, 144, 393, 575
AvaI CYCGRG 2 cut(s) 379, 420
AvaII GGWCC 2 cut(s) 313, 498
BaeGI GKGCMC 1 cut(s) 25
BanI GGYRCC 2 cut(s) 51, 279
BanII GRGCYC 3 cut(s) 34, 427, 576
BbsI GAAGAC 1 cut(s) 377
Bbv12I GWGCWC 3 cut(s) 25, 34, 427
BbvCI CCTCAGC 1 cut(s) 350
BbvI GCAGC 2 cut(s) 242, 377
BccI CCATC 1 cut(s) 53
BceAI ACGGC 2 cut(s) 343, 414
BcnI CCSGG 2 cut(s) 116, 231
BfaI CTAG 1 cut(s) 77
BfoI RGCGCY 2 cut(s) 55, 297
BglII AGATCT 1 cut(s) 372
BisI GCNGC 4 cut(s) 256, 356, 366, 517
BlsI GCNGC 4 cut(s) 257, 357, 367, 518
Bme1390I CCNGG 2 cut(s) 116, 231
Bme18I GGWCC 2 cut(s) 313, 498
BmeT110I CYCGRG 2 cut(s) 379, 420
BmgBI CACGTC 1 cut(s) 12
BmgT120I GGNCC 2 cut(s) 313, 498
BmiI GGNNCC 3 cut(s) 53, 281, 414
BmrFI CCNGG 2 cut(s) 116, 231
BmsI GCATC 2 cut(s) 342, 469
BpiI GAAGAC 1 cut(s) 377
BpmI CTGGAG 2 cut(s) 70, 280
Bpu10I CCTNAGC 1 cut(s) 350
BpuMI CCSGG 2 cut(s) 116, 231
BsaAI YACGTR 1 cut(s) 627
BsaHI GRCGYC 1 cut(s) 52
BsaJI CCNNGG 2 cut(s) 114, 230
BsaXI ACNNNNNCTCC 3 cut(s) 26, 226, 256
Bsc4I CCNNNNNNNGG 4 cut(s) 48, 210, 290, 526
Bse1I ACTGG 3 cut(s) 135, 194, 215
BseDI CCNNGG 2 cut(s) 114, 230
BseGI GGATG 3 cut(s) 45, 93, 388
BseLI CCNNNNNNNGG 4 cut(s) 48, 210, 290, 526
BseMII CTCAG 4 cut(s) 341, 360, 551, 605
BseNI ACTGG 3 cut(s) 135, 194, 215
BsePI GCGCGC 1 cut(s) 64
BseSI GKGCMC 1 cut(s) 25
BseXI GCAGC 2 cut(s) 242, 377
BseYI CCCAGC 1 cut(s) 268
BsgI GTGCAG 1 cut(s) 384
Bsh1236I CGCG 3 cut(s) 66, 343, 496
BshFI GGCC 1 cut(s) 355
BshNI GGYRCC 2 cut(s) 51, 279
BsiHKAI GWGCWC 3 cut(s) 25, 34, 427
BsiHKCI CYCGRG 2 cut(s) 379, 420
BsiSI CCGG 5 cut(s) 49, 116, 143, 204, 230
BslI CCNNNNNNNGG 4 cut(s) 48, 210, 290, 526
BsmI GAATGC 1 cut(s) 612
BsnI GGCC 1 cut(s) 355
BsoBI CYCGRG 2 cut(s) 379, 420
Bsp1286I GDGCHC 4 cut(s) 25, 34, 427, 576
Bsp143I GATC 4 cut(s) 100, 149, 244, 372
BspACI CCGC 8 cut(s) 15, 125, 221, 356, 407, 442, 496, 517
BspANI GGCC 1 cut(s) 355
BspCNI CTCAG 4 cut(s) 342, 361, 550, 604
BspFNI CGCG 3 cut(s) 66, 343, 496
BspLI GGNNCC 3 cut(s) 53, 281, 414
BspT107I GGYRCC 2 cut(s) 51, 279
BsrI ACTGG 3 cut(s) 135, 194, 215
BssECI CCNNGG 2 cut(s) 114, 230
BssHII GCGCGC 1 cut(s) 64
BssMI GATC 4 cut(s) 100, 149, 244, 372
BssNI GRCGYC 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 303
BstACI GRCGYC 1 cut(s) 52
BstBAI YACGTR 1 cut(s) 627
BstC8I GCNNGC 4 cut(s) 66, 427, 514, 521
BstDEI CTNAG 4 cut(s) 350, 369, 537, 591
BstF5I GGATG 3 cut(s) 45, 93, 388
BstFNI CGCG 3 cut(s) 66, 343, 496
BstH2I RGCGCY 2 cut(s) 55, 297
BstHHI GCGC 5 cut(s) 9, 54, 66, 68, 296
BstKTI GATC 4 cut(s) 103, 152, 247, 375
BstMBI GATC 4 cut(s) 100, 149, 244, 372
BstMWI GCNNNNNNNGC 2 cut(s) 29, 355
BstNSI RCATGY 1 cut(s) 516
BstSCI CCNGG 2 cut(s) 114, 229
BstSLI GKGCMC 1 cut(s) 25
BstUI CGCG 3 cut(s) 66, 343, 496
BstV1I GCAGC 2 cut(s) 242, 377
BstV2I GAAGAC 1 cut(s) 377
BstX2I RGATCY 1 cut(s) 372
BstYI RGATCY 1 cut(s) 372
BsuRI GGCC 1 cut(s) 355
BtgZI GCGATG 1 cut(s) 319
BtrI CACGTC 1 cut(s) 12
BtsCI GGATG 3 cut(s) 45, 93, 388
Cac8I GCNNGC 4 cut(s) 66, 427, 514, 521
CfoI GCGC 5 cut(s) 9, 54, 66, 68, 296
Cfr13I GGNCC 2 cut(s) 313, 498
CseI GACGC 1 cut(s) 502
CviAII CATG 2 cut(s) 330, 513
DdeI CTNAG 4 cut(s) 350, 369, 537, 591
DinI GGCGCC 1 cut(s) 53
DpnI GATC 4 cut(s) 102, 151, 246, 374
DpnII GATC 4 cut(s) 100, 149, 244, 372
EciI GGCGGA 2 cut(s) 114, 236
Ecl136II GAGCTC 2 cut(s) 32, 425
Eco24I GRGCYC 3 cut(s) 34, 427, 576
Eco47I GGWCC 2 cut(s) 313, 498
Eco53kI GAGCTC 2 cut(s) 32, 425
Eco88I CYCGRG 2 cut(s) 379, 420
EcoICRI GAGCTC 2 cut(s) 32, 425
EcoRI GAATTC 1 cut(s) 214
EcoT22I ATGCAT 1 cut(s) 335
EcoT38I GRGCYC 3 cut(s) 34, 427, 576
EgeI GGCGCC 1 cut(s) 53
EheI GGCGCC 1 cut(s) 53
FaeI CATG 2 cut(s) 333, 516
FaiI YATR 6 cut(s) 179, 181, 331, 514, 604, 609
FatI CATG 2 cut(s) 329, 512
Fnu4HI GCNGC 4 cut(s) 256, 356, 366, 517
FokI GGATG 3 cut(s) 32, 80, 375
FriOI GRGCYC 3 cut(s) 34, 427, 576
Fsp4HI GCNGC 4 cut(s) 256, 356, 366, 517
FspBI CTAG 1 cut(s) 77
GlaI GCGC 5 cut(s) 8, 53, 65, 67, 295
GluI GCNGC 4 cut(s) 256, 356, 366, 517
GsaI CCCAGC 1 cut(s) 272
GsuI CTGGAG 2 cut(s) 70, 280
HaeII RGCGCY 2 cut(s) 55, 297
HaeIII GGCC 1 cut(s) 355
HapII CCGG 5 cut(s) 49, 116, 143, 204, 230
HgaI GACGC 1 cut(s) 502
HhaI GCGC 5 cut(s) 9, 54, 66, 68, 296
Hin1I GRCGYC 1 cut(s) 52
Hin1II CATG 2 cut(s) 333, 516
Hin6I GCGC 5 cut(s) 7, 52, 64, 66, 294
HinP1I GCGC 5 cut(s) 7, 52, 64, 66, 294
HindIII AAGCTT 1 cut(s) 486
HinfI GANTC 4 cut(s) 121, 224, 382, 465
HpaII CCGG 5 cut(s) 49, 116, 143, 204, 230
HphI GGTGA 4 cut(s) 31, 144, 393, 575
Hpy166II GTNNAC 2 cut(s) 23, 39
Hpy188III TCNNGA 4 cut(s) 248, 420, 434, 563
Hpy8I GTNNAC 2 cut(s) 23, 39
Hpy99I CGWCG 4 cut(s) 60, 290, 293, 435
HpyAV CCTTC 2 cut(s) 426, 597
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4IV ACGT 2 cut(s) 11, 626
HpyCH4V TGCA 4 cut(s) 23, 333, 365, 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 355
HpyF3I CTNAG 4 cut(s) 350, 369, 537, 591
HpySE526I ACGT 2 cut(s) 11, 626
Hsp92I GRCGYC 1 cut(s) 52
Hsp92II CATG 2 cut(s) 333, 516
HspAI GCGC 5 cut(s) 7, 52, 64, 66, 294
KasI GGCGCC 1 cut(s) 51
Kzo9I GATC 4 cut(s) 100, 149, 244, 372
LmnI GCTCC 3 cut(s) 4, 29, 37
Lsp1109I GCAGC 2 cut(s) 242, 377
LweI GCATC 2 cut(s) 342, 469
MaeI CTAG 1 cut(s) 77
MaeII ACGT 2 cut(s) 11, 626
MalI GATC 4 cut(s) 102, 151, 246, 374
MboI GATC 4 cut(s) 100, 149, 244, 372
MboII GAAGA 2 cut(s) 377, 608
MfeI CAATTG 1 cut(s) 524
MflI RGATCY 1 cut(s) 372
MhlI GDGCHC 4 cut(s) 25, 34, 427, 576
MluCI AATT 5 cut(s) 160, 193, 214, 437, 524
MluI ACGCGT 1 cut(s) 341
Mly113I GGCGCC 1 cut(s) 52
MlyI GAGTC 3 cut(s) 130, 218, 391
MmeI TCCRAC 1 cut(s) 416
MnlI CCTC 9 cut(s) 79, 228, 326, 336, 345, 438, 511, 563, 606
Mph1103I ATGCAT 1 cut(s) 335
MspA1I CMGCKG 2 cut(s) 368, 407
MspI CCGG 5 cut(s) 49, 116, 143, 204, 230
MspR9I CCNGG 2 cut(s) 116, 231
MunI CAATTG 1 cut(s) 524
Mva1269I GAATGC 1 cut(s) 612
MvnI CGCG 3 cut(s) 66, 343, 496
MwoI GCNNNNNNNGC 2 cut(s) 29, 355
NarI GGCGCC 1 cut(s) 52
NciI CCSGG 2 cut(s) 116, 231
NdeII GATC 4 cut(s) 100, 149, 244, 372
NlaIII CATG 2 cut(s) 333, 516
NlaIV GGNNCC 3 cut(s) 53, 281, 414
NsiI ATGCAT 1 cut(s) 335
NspI RCATGY 1 cut(s) 516
PaeI GCATGC 1 cut(s) 516
PauI GCGCGC 1 cut(s) 64
PctI GAATGC 1 cut(s) 612
PfeI GAWTC 1 cut(s) 465
PflFI GACNNNGTC 1 cut(s) 496
PflMI CCANNNNNTGG 1 cut(s) 526
PkrI GCNGC 4 cut(s) 257, 357, 367, 518
PleI GAGTC 3 cut(s) 129, 218, 390
PluTI GGCGCC 1 cut(s) 55
PpsI GAGTC 3 cut(s) 129, 218, 390
Ppu21I YACGTR 1 cut(s) 627
Psp124BI GAGCTC 2 cut(s) 34, 427
PspFI CCCAGC 1 cut(s) 268
PspN4I GGNNCC 3 cut(s) 53, 281, 414
PspPI GGNCC 2 cut(s) 313, 498
PsuI RGATCY 1 cut(s) 372
PsyI GACNNNGTC 1 cut(s) 496
PteI GCGCGC 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 368
SacI GAGCTC 2 cut(s) 34, 427
SatI GCNGC 4 cut(s) 256, 356, 366, 517
Sau3AI GATC 4 cut(s) 100, 149, 244, 372
Sau96I GGNCC 2 cut(s) 313, 498
SchI GAGTC 3 cut(s) 130, 218, 391
ScrFI CCNGG 2 cut(s) 116, 231
SduI GDGCHC 4 cut(s) 25, 34, 427, 576
SetI ASST 9 cut(s) 14, 34, 318, 351, 370, 418, 427, 490, 629
SfaNI GCATC 2 cut(s) 342, 469
SfoI GGCGCC 1 cut(s) 53
SinI GGWCC 2 cut(s) 313, 498
SphI GCATGC 1 cut(s) 516
Sse9I AATT 5 cut(s) 160, 193, 214, 437, 524
SsiI CCGC 8 cut(s) 15, 125, 221, 356, 407, 442, 496, 517
SspDI GGCGCC 1 cut(s) 51
SspMI CTAG 1 cut(s) 77
SstI GAGCTC 2 cut(s) 34, 427
StyD4I CCNGG 2 cut(s) 114, 229
TaaI ACNGT 1 cut(s) 303
TaiI ACGT 2 cut(s) 14, 629
TaqI TCGA 4 cut(s) 174, 433, 463, 468
TasI AATT 5 cut(s) 160, 193, 214, 437, 524
TauI GCSGC 2 cut(s) 358, 519
TfiI GAWTC 1 cut(s) 465
TseI GCWGC 2 cut(s) 255, 365
TspDTI ATGAA 2 cut(s) 377, 522
TspGWI ACGGA 4 cut(s) 24, 42, 198, 326
Tth111I GACNNNGTC 1 cut(s) 496
Van91I CCANNNNNTGG 1 cut(s) 526
VneI GTGCAC 1 cut(s) 21
VpaK11BI GGWCC 2 cut(s) 313, 498
XapI RAATTY 2 cut(s) 160, 214
XceI RCATGY 1 cut(s) 516
XspI CTAG 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 335
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.