FvH4_3g28871

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Reverse (-)
21868352 .. 21874826
6475 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28871.t1

Sequence Viewer

Length: 453 bp
ATGAAGAAGCCGCTATATATAGGGAGGGAGCGAGGTGCCGGCATGAATCTGATGATCGAGGGTGTCGGGATTGTTGATCTATGTCTTTGCCTCGTCTCTCTTGCTTCTAGTGAGCTGCTGTATCGGGAGCCCATGCATACGCTTGTGCCGAGGCCGGATATAGTGCGCACAGAGCTCCGTTCGCCATCGTCCGGCGTCGGCACCGGTGCGCCTCCCCTCCCAGGGGACTCCAGTAGCGTCTCCAATCACTTTTCCTCCCTAACGAGTCCGCCGAATTCCAGTTTTCTAGCGAGATCACCCAAAACTTCAAATAAAGTCGATCTCGCAAGAAACTGGAATTATCTCGCAGGAAACTGGAATTCGGAGGACTCGTCGGGGAGGGAAAGTGATCGGGGACGCTGCTGGAGTCCGCTGGGATGGAGTCGCGCTGTCGTCGGCGCCAGACGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

16.34

Weight (kDa)

9.5

Isoelectric Point (pI)

65.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 167
AccB1I GGYRCC 3 cut(s) 35, 200, 437
AccB7I CCANNNNNTGG 1 cut(s) 447
AccII CGCG 1 cut(s) 426
AciI CCGC 3 cut(s) 11, 269, 410
AcsI RAATTY 2 cut(s) 274, 358
AcyI GRCGYC 2 cut(s) 195, 438
AfiI CCNNNNNNNGG 5 cut(s) 191, 221, 222, 223, 447
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 1 cut(s) 309
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 2 cut(s) 115, 175
AluI AGCT 2 cut(s) 115, 175
Alw21I GWGCWC 1 cut(s) 177
Alw26I GTCTC 2 cut(s) 100, 244
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 115, 399
ApoI RAATTY 2 cut(s) 274, 358
AsiGI ACCGGT 1 cut(s) 203
AspLEI GCGC 4 cut(s) 168, 211, 428, 440
AsuHPI GGTGA 1 cut(s) 288
BanI GGYRCC 3 cut(s) 35, 200, 437
BanII GRGCYC 2 cut(s) 132, 177
Bbv12I GWGCWC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 102, 386
BccI CCATC 2 cut(s) 193, 411
BciT130I CCWGG 1 cut(s) 222
BcoDI GTCTC 2 cut(s) 100, 244
BfaI CTAG 2 cut(s) 108, 287
BfoI RGCGCY 1 cut(s) 441
BisI GCNGC 3 cut(s) 11, 116, 400
BlsI GCNGC 3 cut(s) 12, 117, 401
Bme1390I CCNGG 1 cut(s) 222
BmiI GGNNCC 4 cut(s) 37, 129, 202, 439
BmrFI CCNGG 1 cut(s) 222
BpmI CTGGAG 2 cut(s) 214, 424
BsaHI GRCGYC 2 cut(s) 195, 438
BsaJI CCNNGG 3 cut(s) 149, 220, 221
BsaWI WCCGGW 1 cut(s) 203
BsaXI ACNNNNNCTCC 6 cut(s) 239, 269, 356, 370, 386, 400
Bsc4I CCNNNNNNNGG 5 cut(s) 191, 221, 222, 223, 447
Bse118I RCCGGY 2 cut(s) 38, 203
Bse1I ACTGG 4 cut(s) 231, 279, 338, 359
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 3 cut(s) 149, 220, 221
BseGI GGATG 1 cut(s) 422
BseLI CCNNNNNNNGG 5 cut(s) 191, 221, 222, 223, 447
BseNI ACTGG 4 cut(s) 231, 279, 338, 359
BseXI GCAGC 2 cut(s) 102, 386
BseYI CCCAGC 1 cut(s) 412
Bsh1236I CGCG 1 cut(s) 426
BshFI GGCC 1 cut(s) 154
BshNI GGYRCC 3 cut(s) 35, 200, 437
BshTI ACCGGT 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 177
BsiSI CCGG 4 cut(s) 39, 155, 192, 204
BslFI GGGAC 2 cut(s) 239, 408
BslI CCNNNNNNNGG 5 cut(s) 191, 221, 222, 223, 447
BsmAI GTCTC 2 cut(s) 100, 244
BsmBI CGTCTC 2 cut(s) 100, 244
BsmFI GGGAC 2 cut(s) 239, 408
BsnI GGCC 1 cut(s) 154
Bsp1286I GDGCHC 2 cut(s) 132, 177
Bsp143I GATC 5 cut(s) 54, 76, 293, 319, 388
BspACI CCGC 3 cut(s) 11, 269, 410
BspANI GGCC 1 cut(s) 154
BspFNI CGCG 1 cut(s) 426
BspLI GGNNCC 4 cut(s) 37, 129, 202, 439
BspT107I GGYRCC 3 cut(s) 35, 200, 437
BsrFI RCCGGY 2 cut(s) 38, 203
BsrI ACTGG 4 cut(s) 231, 279, 338, 359
BssAI RCCGGY 2 cut(s) 38, 203
BssECI CCNNGG 3 cut(s) 149, 220, 221
BssMI GATC 5 cut(s) 54, 76, 293, 319, 388
BssNI GRCGYC 2 cut(s) 195, 438
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 447
BstACI GRCGYC 2 cut(s) 195, 438
BstC8I GCNNGC 1 cut(s) 40
BstF5I GGATG 1 cut(s) 422
BstFNI CGCG 1 cut(s) 426
BstH2I RGCGCY 1 cut(s) 441
BstHHI GCGC 4 cut(s) 168, 211, 428, 440
BstKTI GATC 5 cut(s) 57, 79, 296, 322, 391
BstMAI GTCTC 2 cut(s) 100, 244
BstMBI GATC 5 cut(s) 54, 76, 293, 319, 388
BstMWI GCNNNNNNNGC 2 cut(s) 172, 181
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstUI CGCG 1 cut(s) 426
BstV1I GCAGC 2 cut(s) 102, 386
BsuRI GGCC 1 cut(s) 154
BtsCI GGATG 1 cut(s) 422
Cac8I GCNNGC 1 cut(s) 40
CfoI GCGC 4 cut(s) 168, 211, 428, 440
Cfr10I RCCGGY 2 cut(s) 38, 203
CseI GACGC 3 cut(s) 184, 226, 405
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 2 cut(s) 43, 133
CviJI RGCY 5 cut(s) 10, 115, 130, 154, 175
CviKI_1 RGCY 5 cut(s) 10, 115, 130, 154, 175
DinI GGCGCC 1 cut(s) 439
DpnI GATC 5 cut(s) 56, 78, 295, 321, 390
DpnII GATC 5 cut(s) 54, 76, 293, 319, 388
EciI GGCGGA 1 cut(s) 258
Ecl136II GAGCTC 1 cut(s) 175
Eco24I GRGCYC 2 cut(s) 132, 177
Eco53kI GAGCTC 1 cut(s) 175
EcoICRI GAGCTC 1 cut(s) 175
EcoRI GAATTC 2 cut(s) 274, 358
EcoRII CCWGG 1 cut(s) 220
EcoT22I ATGCAT 1 cut(s) 138
EcoT38I GRGCYC 2 cut(s) 132, 177
EgeI GGCGCC 1 cut(s) 439
EheI GGCGCC 1 cut(s) 439
Esp3I CGTCTC 2 cut(s) 100, 244
FaeI CATG 2 cut(s) 46, 136
FaiI YATR 8 cut(s) 16, 18, 20, 44, 82, 134, 138, 161
FaqI GGGAC 2 cut(s) 239, 408
FatI CATG 2 cut(s) 42, 132
Fnu4HI GCNGC 3 cut(s) 11, 116, 400
FokI GGATG 1 cut(s) 429
FriOI GRGCYC 2 cut(s) 132, 177
Fsp4HI GCNGC 3 cut(s) 11, 116, 400
FspAI RTGCGCAY 1 cut(s) 167
FspBI CTAG 2 cut(s) 108, 287
FspI TGCGCA 1 cut(s) 167
GlaI GCGC 4 cut(s) 167, 210, 427, 439
GluI GCNGC 3 cut(s) 11, 116, 400
GsaI CCCAGC 1 cut(s) 416
GsuI CTGGAG 2 cut(s) 214, 424
HaeII RGCGCY 1 cut(s) 441
HaeIII GGCC 1 cut(s) 154
HapII CCGG 4 cut(s) 39, 155, 192, 204
HgaI GACGC 3 cut(s) 184, 226, 405
HhaI GCGC 4 cut(s) 168, 211, 428, 440
Hin1I GRCGYC 2 cut(s) 195, 438
Hin1II CATG 2 cut(s) 46, 136
Hin6I GCGC 4 cut(s) 166, 209, 426, 438
HinP1I GCGC 4 cut(s) 166, 209, 426, 438
HinfI GANTC 6 cut(s) 46, 227, 265, 368, 406, 421
HpaII CCGG 4 cut(s) 39, 155, 192, 204
HphI GGTGA 1 cut(s) 288
Hpy188I TCNGA 2 cut(s) 51, 364
Hpy188III TCNNGA 2 cut(s) 67, 125
Hpy99I CGWCG 3 cut(s) 200, 376, 437
HpyCH4III ACNGT 1 cut(s) 447
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 181
Hsp92I GRCGYC 2 cut(s) 195, 438
Hsp92II CATG 2 cut(s) 46, 136
HspAI GCGC 4 cut(s) 166, 209, 426, 438
KasI GGCGCC 1 cut(s) 437
KroI GCCGGC 1 cut(s) 38
KroNI GCCGGC 1 cut(s) 40
Kzo9I GATC 5 cut(s) 54, 76, 293, 319, 388
LmnI GCTCC 3 cut(s) 28, 127, 180
Lsp1109I GCAGC 2 cut(s) 102, 386
MaeI CTAG 2 cut(s) 108, 287
MalI GATC 5 cut(s) 56, 78, 295, 321, 390
MboI GATC 5 cut(s) 54, 76, 293, 319, 388
MboII GAAGA 1 cut(s) 16
MhlI GDGCHC 2 cut(s) 132, 177
MluCI AATT 3 cut(s) 274, 337, 358
Mly113I GGCGCC 1 cut(s) 438
MlyI GAGTC 5 cut(s) 221, 274, 362, 415, 430
Mph1103I ATGCAT 1 cut(s) 138
MroNI GCCGGC 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 412
MspI CCGG 4 cut(s) 39, 155, 192, 204
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
MvnI CGCG 1 cut(s) 426
MwoI GCNNNNNNNGC 2 cut(s) 172, 181
NaeI GCCGGC 1 cut(s) 40
NarI GGCGCC 1 cut(s) 438
NdeII GATC 5 cut(s) 54, 76, 293, 319, 388
NgoMIV GCCGGC 1 cut(s) 38
NlaIII CATG 2 cut(s) 46, 136
NlaIV GGNNCC 4 cut(s) 37, 129, 202, 439
NmeAIII GCCGAG 1 cut(s) 174
NsbI TGCGCA 1 cut(s) 167
NsiI ATGCAT 1 cut(s) 138
PasI CCCWGGG 1 cut(s) 221
PcsI WCGNNNNNNNCGW 3 cut(s) 146, 269, 368
PdiI GCCGGC 1 cut(s) 40
PfeI GAWTC 1 cut(s) 46
PflMI CCANNNNNTGG 1 cut(s) 447
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 3 cut(s) 12, 117, 401
PleI GAGTC 5 cut(s) 221, 273, 362, 414, 429
PluTI GGCGCC 1 cut(s) 441
PpsI GAGTC 5 cut(s) 221, 273, 362, 414, 429
Psp124BI GAGCTC 1 cut(s) 177
Psp6I CCWGG 1 cut(s) 220
PspFI CCCAGC 1 cut(s) 412
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 4 cut(s) 37, 129, 202, 439
SacI GAGCTC 1 cut(s) 177
SatI GCNGC 3 cut(s) 11, 116, 400
Sau3AI GATC 5 cut(s) 54, 76, 293, 319, 388
SchI GAGTC 5 cut(s) 221, 274, 362, 415, 430
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 2 cut(s) 132, 177
SetI ASST 3 cut(s) 37, 117, 177
SfoI GGCGCC 1 cut(s) 439
SgrAI CRCCGGYG 1 cut(s) 203
Sse9I AATT 3 cut(s) 274, 337, 358
SsiI CCGC 3 cut(s) 11, 269, 410
SspDI GGCGCC 1 cut(s) 437
SspMI CTAG 2 cut(s) 108, 287
SstI GAGCTC 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 447
TaqI TCGA 2 cut(s) 57, 318
TasI AATT 3 cut(s) 274, 337, 358
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 1 cut(s) 46
TseI GCWGC 2 cut(s) 115, 399
TspDTI ATGAA 2 cut(s) 17, 59
TspGWI ACGGA 1 cut(s) 167
Van91I CCANNNNNTGG 1 cut(s) 447
XapI RAATTY 2 cut(s) 274, 358
XspI CTAG 2 cut(s) 108, 287
Zsp2I ATGCAT 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.