FvH4_5g31890

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000118
Physical Location & Seq
Reverse (-)
23001049 .. 23001735
687 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31890.t1

Sequence Viewer

Length: 525 bp
ATGATGAGATGGTTTTGGTGGTGTGATGGGGTGAGTGGCAGACTCGTTTATGAGTTGAAGCGTGTTCTGTCAAGGGAGGATGGTGGGTGGTATGGGGGAGAACAGATTCCAACGCCGACAAAGAGGCCTTGTGGAGGCTCTGGTGTGGCTGATAGATCTGGATCTAGCCAGAAGGGGTGGGTGATCACTACTTCAGGCGGCCGGCAGTTTGATGACGACGGTGATCAACCCAAGACCGAAGGTTGGCTGCGATGTGGTGGGCTCAACAGAGGGGAGGTGATGCAGCTGCTGACGTGGGCCAGAGTTGGTTGGCCAGTGGACCTTTGTCTTGCTTTGGACCTCATGGCCTTGATTTGGGCGATTTTGGATACTGGTGGGCTATGTCCTGGAAAACGCACGCTGCATACCATGTTTGTCCTAATGAGGCGGCGAGTTCCTTGCTTTGTCAAATGGTCACTGCCTCCTAATGGCAAGAAGTGGCAAGATGAAACTTGGGGTCACTGGTTATTCCCAATGGCATCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

19.7

Weight (kDa)

9.02

Isoelectric Point (pI)

42.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 198, 427
AclWI GGATC 1 cut(s) 169
AcoI YGGCCR 2 cut(s) 199, 311
AcuI CTGAAG 1 cut(s) 177
AfiI CCNNNNNNNGG 4 cut(s) 134, 243, 354, 467
AgsI TTSAA 1 cut(s) 58
AjiI CACGTC 1 cut(s) 294
AjnI CCWGG 1 cut(s) 385
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
AlwI GGATC 1 cut(s) 169
AlwNI CAGNNNCTG 1 cut(s) 289
AoxI GGCC 5 cut(s) 125, 199, 297, 311, 345
ApeKI GCWGC 4 cut(s) 247, 283, 286, 400
Asp700I GAANNNNTTC 1 cut(s) 105
AspS9I GGNCC 3 cut(s) 297, 319, 337
AsuHPI GGTGA 4 cut(s) 43, 193, 233, 289
AvaII GGWCC 2 cut(s) 319, 337
BalI TGGCCA 1 cut(s) 313
BanII GRGCYC 1 cut(s) 264
BbvI GCAGC 4 cut(s) 234, 273, 295, 387
BccI CCATC 3 cut(s) 3, 20, 74
BcgI CGANNNNNNTGC 2 cut(s) 420, 454
BciT130I CCWGG 1 cut(s) 387
BciVI GTATCC 1 cut(s) 361
BclI TGATCA 2 cut(s) 183, 223
BfaI CTAG 1 cut(s) 165
BfuI GTATCC 1 cut(s) 361
BglII AGATCT 1 cut(s) 155
BisI GCNGC 6 cut(s) 199, 248, 284, 287, 401, 428
BlsI GCNGC 6 cut(s) 200, 249, 285, 288, 402, 429
Bme1390I CCNGG 1 cut(s) 387
Bme18I GGWCC 2 cut(s) 319, 337
BmgBI CACGTC 1 cut(s) 294
BmgT120I GGNCC 3 cut(s) 297, 319, 337
BmrFI CCNGG 1 cut(s) 387
BmsI GCATC 1 cut(s) 270
BoxI GACNNNNGTC 1 cut(s) 324
BsaBI GATNNNNATC 1 cut(s) 160
Bsc4I CCNNNNNNNGG 4 cut(s) 134, 243, 354, 467
Bse118I RCCGGY 1 cut(s) 201
Bse1I ACTGG 3 cut(s) 314, 376, 506
Bse8I GATNNNNATC 1 cut(s) 160
BseBI CCWGG 1 cut(s) 387
BseGI GGATG 1 cut(s) 85
BseJI GATNNNNATC 1 cut(s) 160
BseLI CCNNNNNNNGG 4 cut(s) 134, 243, 354, 467
BseNI ACTGG 3 cut(s) 314, 376, 506
BseX3I CGGCCG 1 cut(s) 199
BseXI GCAGC 4 cut(s) 234, 273, 295, 387
Bsh1285I CGRYCG 1 cut(s) 202
BshFI GGCC 5 cut(s) 127, 201, 299, 313, 347
BsiEI CGRYCG 1 cut(s) 202
BsiSI CCGG 1 cut(s) 202
BslI CCNNNNNNNGG 4 cut(s) 134, 243, 354, 467
BsnI GGCC 5 cut(s) 127, 201, 299, 313, 347
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 4 cut(s) 155, 161, 183, 223
BspACI CCGC 2 cut(s) 198, 427
BspANI GGCC 5 cut(s) 127, 201, 299, 313, 347
BspPI GGATC 1 cut(s) 169
BsrFI RCCGGY 1 cut(s) 201
BsrI ACTGG 3 cut(s) 314, 376, 506
BssAI RCCGGY 1 cut(s) 201
BssMI GATC 4 cut(s) 155, 161, 183, 223
Bst2UI CCWGG 1 cut(s) 387
Bst4CI ACNGT 1 cut(s) 221
BstC8I GCNNGC 2 cut(s) 203, 398
BstENI CCTNNNNNAGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 4 cut(s) 158, 164, 186, 226
BstMBI GATC 4 cut(s) 155, 161, 183, 223
BstMCI CGRYCG 1 cut(s) 202
BstNI CCWGG 1 cut(s) 387
BstPAI GACNNNNGTC 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 385
BstV1I GCAGC 4 cut(s) 234, 273, 295, 387
BstX2I RGATCY 2 cut(s) 155, 161
BstYI RGATCY 2 cut(s) 155, 161
BstZI CGGCCG 1 cut(s) 199
BsuI GTATCC 1 cut(s) 361
BsuRI GGCC 5 cut(s) 127, 201, 299, 313, 347
BtgZI GCGATG 1 cut(s) 265
BtrI CACGTC 1 cut(s) 294
BtsCI GGATG 1 cut(s) 85
BtsI GCAGTG 1 cut(s) 455
BtsIMutI CAGTG 3 cut(s) 321, 455, 499
Cac8I GCNNGC 2 cut(s) 203, 398
CaiI CAGNNNCTG 1 cut(s) 289
Cfr10I RCCGGY 1 cut(s) 201
Cfr13I GGNCC 3 cut(s) 297, 319, 337
CviAII CATG 2 cut(s) 343, 409
DpnI GATC 4 cut(s) 157, 163, 185, 225
DpnII GATC 4 cut(s) 155, 161, 183, 223
EaeI YGGCCR 2 cut(s) 199, 311
EagI CGGCCG 1 cut(s) 199
EclXI CGGCCG 1 cut(s) 199
Eco147I AGGCCT 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 264
Eco47I GGWCC 2 cut(s) 319, 337
Eco52I CGGCCG 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 177
EcoNI CCTNNNNNAGG 1 cut(s) 132
EcoRII CCWGG 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 264
FaeI CATG 2 cut(s) 346, 412
FaiI YATR 7 cut(s) 51, 93, 344, 382, 405, 410, 523
FatI CATG 2 cut(s) 342, 408
FbaI TGATCA 2 cut(s) 183, 223
Fnu4HI GCNGC 6 cut(s) 199, 248, 284, 287, 401, 428
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 264
Fsp4HI GCNGC 6 cut(s) 199, 248, 284, 287, 401, 428
FspBI CTAG 1 cut(s) 165
GluI GCNGC 6 cut(s) 199, 248, 284, 287, 401, 428
HaeIII GGCC 5 cut(s) 127, 201, 299, 313, 347
HapII CCGG 1 cut(s) 202
Hin1II CATG 2 cut(s) 346, 412
HinfI GANTC 2 cut(s) 42, 106
HpaII CCGG 1 cut(s) 202
HphI GGTGA 4 cut(s) 43, 193, 233, 289
Hpy166II GTNNAC 1 cut(s) 319
Hpy188III TCNNGA 1 cut(s) 159
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 2 cut(s) 166, 233
HpyCH4III ACNGT 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 2 cut(s) 283, 403
HpySE526I ACGT 1 cut(s) 293
Hsp92II CATG 2 cut(s) 346, 412
KroI GCCGGC 1 cut(s) 201
KroNI GCCGGC 1 cut(s) 203
Ksp22I TGATCA 2 cut(s) 183, 223
Kzo9I GATC 4 cut(s) 155, 161, 183, 223
Lsp1109I GCAGC 4 cut(s) 234, 273, 295, 387
LweI GCATC 1 cut(s) 270
MaeI CTAG 1 cut(s) 165
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 2 cut(s) 453, 497
MalI GATC 4 cut(s) 157, 163, 185, 225
MboI GATC 4 cut(s) 155, 161, 183, 223
MflI RGATCY 2 cut(s) 155, 161
MhlI GDGCHC 1 cut(s) 264
MlsI TGGCCA 1 cut(s) 313
MluNI TGGCCA 1 cut(s) 313
MlyI GAGTC 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 8 cut(s) 70, 117, 128, 263, 268, 350, 417, 471
Mox20I TGGCCA 1 cut(s) 313
MroNI GCCGGC 1 cut(s) 201
MroXI GAANNNNTTC 1 cut(s) 105
MscI TGGCCA 1 cut(s) 313
Msp20I TGGCCA 1 cut(s) 313
MspA1I CMGCKG 1 cut(s) 286
MspI CCGG 1 cut(s) 202
MspR9I CCNGG 1 cut(s) 387
MvaI CCWGG 1 cut(s) 387
NaeI GCCGGC 1 cut(s) 203
NdeII GATC 4 cut(s) 155, 161, 183, 223
NgoMIV GCCGGC 1 cut(s) 201
NlaIII CATG 2 cut(s) 346, 412
NmuCI GTSAC 2 cut(s) 453, 497
PceI AGGCCT 1 cut(s) 127
PdiI GCCGGC 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 106
PfoI TCCNGGA 1 cut(s) 385
PkrI GCNGC 6 cut(s) 200, 249, 285, 288, 402, 429
PleI GAGTC 1 cut(s) 36
PpsI GAGTC 1 cut(s) 36
PshAI GACNNNNGTC 1 cut(s) 324
Psp6I CCWGG 1 cut(s) 385
PspGI CCWGG 1 cut(s) 385
PspPI GGNCC 3 cut(s) 297, 319, 337
PstNI CAGNNNCTG 1 cut(s) 289
PsuI RGATCY 2 cut(s) 155, 161
PvuII CAGCTG 1 cut(s) 286
SatI GCNGC 6 cut(s) 199, 248, 284, 287, 401, 428
Sau3AI GATC 4 cut(s) 155, 161, 183, 223
Sau96I GGNCC 3 cut(s) 297, 319, 337
SchI GAGTC 1 cut(s) 36
ScrFI CCNGG 1 cut(s) 387
SduI GDGCHC 1 cut(s) 264
SetI ASST 6 cut(s) 244, 279, 288, 296, 324, 342
SfaNI GCATC 1 cut(s) 270
SinI GGWCC 2 cut(s) 319, 337
SseBI AGGCCT 1 cut(s) 127
SsiI CCGC 2 cut(s) 198, 427
SspMI CTAG 1 cut(s) 165
StuI AGGCCT 1 cut(s) 127
StyD4I CCNGG 1 cut(s) 385
TaaI ACNGT 1 cut(s) 221
TaiI ACGT 1 cut(s) 296
TaqII GACCGA 1 cut(s) 251
TauI GCSGC 2 cut(s) 201, 430
TfiI GAWTC 1 cut(s) 106
TscAI CASTG 3 cut(s) 321, 462, 506
TseFI GTSAC 2 cut(s) 453, 497
TseI GCWGC 4 cut(s) 247, 283, 286, 400
Tsp45I GTSAC 2 cut(s) 453, 497
TspDTI ATGAA 1 cut(s) 501
TspRI CASTG 3 cut(s) 321, 462, 506
VpaK11BI GGWCC 2 cut(s) 319, 337
XagI CCTNNNNNAGG 1 cut(s) 132
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.