Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000118

Physical Location & Seq

Genomic Coordinates Forward (+)

5917932 .. 5920467

Gene Structure 2536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g06630.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCTATGCCCTCTAAACAAGGCACAGTGTGGGGAGAGGGGGACAGCTAGTGGGGCATATGGAGGTGCATGGTGCAGAGGGAAAATTAAAGTCAAGGCTGTTGGGGTTGACAGACAGAGAAGAGGAGAGGAGGAGAGCTTGTTCTGTTTGGGGCTCGTTGATGTCGTCTCTCCGTTCGCCACCGTACGGCGCCGACGAGGGCGCGCCTCCACCCTAGCGGACTCCAACAGCGTCCCCGACCACTTTCCCTCCCCGGCGAGTCCACCGAATTCCAGTTTTCTGGCCAGATCACCCAAAACTTCAAACAAAGTCAATCTGGCCGGAAAACTGGAATTCGGCGGACTCGCCGGAGATGGAAAGTGGTCGGGGAAGCTGTTGGAGTCCGCTGGGGTGGAGGTGTGCCCTCGCCGGTTCCGTACGGTGGCGTCAGGAGGGATGTCCGCACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005801 GO:0005886 GO:0006810 GO:0008150 GO:0008515 GO:0008643 GO:0009705 GO:0012505 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022857 GO:0031090 GO:0034219 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_1 MFS_2

Protein Analysis

150

Amino Acids

15.69

Weight (kDa)

10.05

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica	Prupe.1G448800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata	RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora	Rmu_co8096726.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa	Rorug02G0236500
rosa_samantha	Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	189
AccII	CGCG	1 cut(s)	204
AciI	CCGC	4 cut(s)	218, 339, 384, 441
AcoI	YGGCCR	2 cut(s)	282, 318
AcsI	RAATTY	2 cut(s)	268, 332
AcyI	GRCGYC	2 cut(s)	190, 425
AdeI	CACNNNGTG	1 cut(s)	29
AfaI	GTAC	2 cut(s)	186, 418
AfiI	CCNNNNNNNGG	2 cut(s)	186, 421
AgsI	TTSAA	1 cut(s)	303
AloI	GAACNNNNNNTCC	2 cut(s)	125, 157
AluBI	AGCT	3 cut(s)	47, 138, 373
AluI	AGCT	3 cut(s)	47, 138, 373
Alw26I	GTCTC	1 cut(s)	172
AoxI	GGCC	2 cut(s)	282, 318
ApoI	RAATTY	2 cut(s)	268, 332
AscI	GGCGCGCC	1 cut(s)	202
AspLEI	GCGC	3 cut(s)	192, 204, 206
AsuC2I	CCSGG	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	282
BaeGI	GKGCMC	1 cut(s)	404
BalI	TGGCCA	1 cut(s)	284
BanI	GGYRCC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	156
BccI	CCATC	1 cut(s)	347
BceAI	ACGGC	1 cut(s)	203
BcnI	CCSGG	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	2 cut(s)	48, 215
BfoI	RGCGCY	1 cut(s)	193
Bme1390I	CCNGG	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	191, 413
BmrFI	CCNGG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	254
BsaHI	GRCGYC	2 cut(s)	190, 425
BsaJI	CCNNGG	1 cut(s)	252
BsaXI	ACNNNNNCTCC	4 cut(s)	125, 155, 233, 263
Bsc4I	CCNNNNNNNGG	2 cut(s)	186, 421
Bse118I	RCCGGY	1 cut(s)	408
Bse1I	ACTGG	2 cut(s)	273, 333
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	441
BseLI	CCNNNNNNNGG	2 cut(s)	186, 421
BseNI	ACTGG	2 cut(s)	273, 333
BsePI	GCGCGC	1 cut(s)	202
BseRI	GAGGAG	3 cut(s)	138, 143, 146
BseSI	GKGCMC	1 cut(s)	404
BseYI	CCCAGC	1 cut(s)	386
BsgI	GTGCAG	1 cut(s)	94
Bsh1236I	CGCG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	284, 320
BshNI	GGYRCC	1 cut(s)	189
BsiSI	CCGG	4 cut(s)	254, 321, 348, 409
BsiWI	CGTACG	2 cut(s)	184, 416
BslFI	GGGAC	2 cut(s)	55, 218
BslI	CCNNNNNNNGG	2 cut(s)	186, 421
BsmAI	GTCTC	1 cut(s)	172
BsmBI	CGTCTC	1 cut(s)	172
BsmFI	GGGAC	2 cut(s)	55, 218
BsnI	GGCC	2 cut(s)	284, 320
Bsp1286I	GDGCHC	2 cut(s)	156, 404
Bsp143I	GATC	1 cut(s)	287
BspACI	CCGC	4 cut(s)	218, 339, 384, 441
BspANI	GGCC	2 cut(s)	284, 320
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	191, 413
BspT107I	GGYRCC	1 cut(s)	189
BsrFI	RCCGGY	1 cut(s)	408
BsrI	ACTGG	2 cut(s)	273, 333
BssAI	RCCGGY	1 cut(s)	408
BssECI	CCNNGG	1 cut(s)	252
BssHII	GCGCGC	1 cut(s)	202
BssMI	GATC	1 cut(s)	287
BssNI	GRCGYC	2 cut(s)	190, 425
Bst4CI	ACNGT	3 cut(s)	27, 184, 421
Bst6I	CTCTTC	1 cut(s)	115
BstACI	GRCGYC	2 cut(s)	190, 425
BstC8I	GCNNGC	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	441
BstFNI	CGCG	1 cut(s)	204
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	3 cut(s)	192, 204, 206
BstKTI	GATC	1 cut(s)	290
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	287
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	404
BstUI	CGCG	1 cut(s)	204
BstXI	CCANNNNNNTGG	1 cut(s)	280
BsuRI	GGCC	2 cut(s)	284, 320
BtsCI	GGATG	1 cut(s)	441
BtsIMutI	CAGTG	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	204
CfoI	GCGC	3 cut(s)	192, 204, 206
Cfr10I	RCCGGY	1 cut(s)	408
CseI	GACGC	2 cut(s)	220, 414
Csp6I	GTAC	2 cut(s)	185, 417
CviAII	CATG	1 cut(s)	69
CviJI	RGCY	7 cut(s)	47, 98, 138, 154, 284, 320, 373
CviKI_1	RGCY	7 cut(s)	47, 98, 138, 154, 284, 320, 373
CviQI	GTAC	2 cut(s)	185, 417
DinI	GGCGCC	1 cut(s)	191
DpnI	GATC	1 cut(s)	289
DpnII	GATC	1 cut(s)	287
DraIII	CACNNNGTG	1 cut(s)	29
EaeI	YGGCCR	2 cut(s)	282, 318
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
EciI	GGCGGA	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	156
EcoRI	GAATTC	2 cut(s)	268, 332
EcoT38I	GRGCYC	1 cut(s)	156
EgeI	GGCGCC	1 cut(s)	191
EheI	GGCGCC	1 cut(s)	191
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	1 cut(s)	72
FaiI	YATR	4 cut(s)	7, 58, 60, 70
FaqI	GGGAC	2 cut(s)	55, 218
FatI	CATG	1 cut(s)	68
FauNDI	CATATG	1 cut(s)	58
FriOI	GRGCYC	1 cut(s)	156
FspBI	CTAG	2 cut(s)	48, 215
GlaI	GCGC	3 cut(s)	191, 203, 205
GsaI	CCCAGC	1 cut(s)	390
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	284, 320
HapII	CCGG	4 cut(s)	254, 321, 348, 409
HgaI	GACGC	2 cut(s)	220, 414
HhaI	GCGC	3 cut(s)	192, 204, 206
Hin1I	GRCGYC	2 cut(s)	190, 425
Hin1II	CATG	1 cut(s)	72
Hin6I	GCGC	3 cut(s)	190, 202, 204
HinP1I	GCGC	3 cut(s)	190, 202, 204
HincII	GTYRAC	1 cut(s)	109
HindII	GTYRAC	1 cut(s)	109
HinfI	GANTC	4 cut(s)	221, 259, 342, 380
HpaII	CCGG	4 cut(s)	254, 321, 348, 409
HphI	GGTGA	1 cut(s)	282
Hpy166II	GTNNAC	2 cut(s)	109, 263
Hpy188III	TCNNGA	1 cut(s)	429
Hpy8I	GTNNAC	2 cut(s)	109, 263
Hpy99I	CGWCG	1 cut(s)	198
HpyCH4III	ACNGT	3 cut(s)	27, 184, 421
HpyCH4V	TGCA	2 cut(s)	68, 75
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
Hsp92I	GRCGYC	2 cut(s)	190, 425
Hsp92II	CATG	1 cut(s)	72
HspAI	GCGC	3 cut(s)	190, 202, 204
KasI	GGCGCC	1 cut(s)	189
Kzo9I	GATC	1 cut(s)	287
MaeI	CTAG	2 cut(s)	48, 215
MalI	GATC	1 cut(s)	289
MboI	GATC	1 cut(s)	287
MboII	GAAGA	1 cut(s)	132
MhlI	GDGCHC	2 cut(s)	156, 404
MlsI	TGGCCA	1 cut(s)	284
MluCI	AATT	3 cut(s)	84, 268, 332
MluNI	TGGCCA	1 cut(s)	284
Mly113I	GGCGCC	1 cut(s)	190
MlyI	GAGTC	4 cut(s)	215, 268, 336, 389
MmeI	TCCRAC	2 cut(s)	249, 357
Mox20I	TGGCCA	1 cut(s)	284
MscI	TGGCCA	1 cut(s)	284
MseI	TTAA	2 cut(s)	87, 448
Msp20I	TGGCCA	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	4 cut(s)	254, 321, 348, 409
MspR9I	CCNGG	1 cut(s)	254
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	53
NarI	GGCGCC	1 cut(s)	190
NciI	CCSGG	1 cut(s)	254
NdeI	CATATG	1 cut(s)	58
NdeII	GATC	1 cut(s)	287
NlaIII	CATG	1 cut(s)	72
NlaIV	GGNNCC	2 cut(s)	191, 413
PalAI	GGCGCGCC	1 cut(s)	202
PauI	GCGCGC	1 cut(s)	202
PcsI	WCGNNNNNNNCGW	3 cut(s)	162, 193, 412
Pfl23II	CGTACG	2 cut(s)	184, 416
PleI	GAGTC	4 cut(s)	215, 267, 336, 388
PluTI	GGCGCC	1 cut(s)	193
PpsI	GAGTC	4 cut(s)	215, 267, 336, 388
PspFI	CCCAGC	1 cut(s)	386
PspLI	CGTACG	2 cut(s)	184, 416
PspN4I	GGNNCC	2 cut(s)	191, 413
PteI	GCGCGC	1 cut(s)	202
RsaI	GTAC	2 cut(s)	186, 418
RsaNI	GTAC	2 cut(s)	185, 417
SaqAI	TTAA	2 cut(s)	87, 448
Sau3AI	GATC	1 cut(s)	287
SchI	GAGTC	4 cut(s)	215, 268, 336, 389
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	2 cut(s)	156, 404
SetI	ASST	5 cut(s)	49, 67, 140, 375, 399
SfoI	GGCGCC	1 cut(s)	191
SgsI	GGCGCGCC	1 cut(s)	202
Sse9I	AATT	3 cut(s)	84, 268, 332
SsiI	CCGC	4 cut(s)	218, 339, 384, 441
SspDI	GGCGCC	1 cut(s)	189
SspMI	CTAG	2 cut(s)	48, 215
StyD4I	CCNGG	1 cut(s)	252
TaaI	ACNGT	3 cut(s)	27, 184, 421
TasI	AATT	3 cut(s)	84, 268, 332
Tru1I	TTAA	2 cut(s)	87, 448
Tru9I	TTAA	2 cut(s)	87, 448
TscAI	CASTG	1 cut(s)	32
TspGWI	ACGGA	2 cut(s)	162, 404
TspRI	CASTG	1 cut(s)	32
XapI	RAATTY	2 cut(s)	268, 332
XspI	CTAG	2 cut(s)	48, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.