E3 ubiquitin-protein ligase
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 45 |
| Acc36I | ACCTGC | 1 cut(s) | 24 |
| Acc65I | GGTACC | 2 cut(s) | 12, 184 |
| AccB1I | GGYRCC | 2 cut(s) | 12, 184 |
| AccBSI | CCGCTC | 2 cut(s) | 507, 759 |
| AccII | CGCG | 1 cut(s) | 106 |
| AciI | CCGC | 3 cut(s) | 507, 579, 757 |
| AcsI | RAATTY | 1 cut(s) | 137 |
| AcvI | CACGTG | 2 cut(s) | 850, 875 |
| AdeI | CACNNNGTG | 1 cut(s) | 814 |
| AfaI | GTAC | 4 cut(s) | 14, 186, 293, 408 |
| AfeI | AGCGCT | 1 cut(s) | 332 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 158, 322, 540, 588, 718 |
| AflIII | ACRYGT | 2 cut(s) | 305, 849 |
| AgsI | TTSAA | 4 cut(s) | 56, 61, 71, 455 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 861 |
| AjiI | CACGTC | 1 cut(s) | 389 |
| AjnI | CCWGG | 2 cut(s) | 409, 433 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 630, 662 |
| AluBI | AGCT | 1 cut(s) | 281 |
| AluI | AGCT | 1 cut(s) | 281 |
| Aor51HI | AGCGCT | 1 cut(s) | 332 |
| ApeKI | GCWGC | 5 cut(s) | 349, 364, 382, 397, 415 |
| ApoI | RAATTY | 1 cut(s) | 137 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 137 |
| Asp718I | GGTACC | 2 cut(s) | 12, 184 |
| AspLEI | GCGC | 1 cut(s) | 333 |
| AspS9I | GGNCC | 5 cut(s) | 166, 531, 560, 709, 738 |
| AsuHPI | GGTGA | 3 cut(s) | 594, 772, 800 |
| AvaII | GGWCC | 5 cut(s) | 166, 531, 560, 709, 738 |
| BanI | GGYRCC | 2 cut(s) | 12, 184 |
| BbrPI | CACGTG | 2 cut(s) | 850, 875 |
| BbvI | GCAGC | 5 cut(s) | 351, 361, 394, 402, 409 |
| BccI | CCATC | 1 cut(s) | 613 |
| BciT130I | CCWGG | 2 cut(s) | 411, 435 |
| BclI | TGATCA | 1 cut(s) | 199 |
| BfoI | RGCGCY | 1 cut(s) | 334 |
| BfuAI | ACCTGC | 1 cut(s) | 24 |
| BisI | GCNGC | 5 cut(s) | 350, 365, 383, 398, 416 |
| BlsI | GCNGC | 5 cut(s) | 351, 366, 384, 399, 417 |
| Bme1390I | CCNGG | 2 cut(s) | 411, 435 |
| Bme18I | GGWCC | 5 cut(s) | 166, 531, 560, 709, 738 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 861 |
| BmgBI | CACGTC | 1 cut(s) | 389 |
| BmgT120I | GGNCC | 5 cut(s) | 166, 531, 560, 709, 738 |
| BmiI | GGNNCC | 7 cut(s) | 14, 186, 512, 532, 533, 679, 711 |
| BmrFI | CCNGG | 2 cut(s) | 411, 435 |
| BmrI | ACTGGG | 1 cut(s) | 577 |
| BmsI | GCATC | 1 cut(s) | 206 |
| BmuI | ACTGGG | 1 cut(s) | 577 |
| BpuEI | CTTGAG | 3 cut(s) | 28, 217, 880 |
| BsaAI | YACGTR | 2 cut(s) | 850, 875 |
| BsaBI | GATNNNNATC | 1 cut(s) | 629 |
| BsaJI | CCNNGG | 4 cut(s) | 116, 223, 410, 820 |
| BsaWI | WCCGGW | 2 cut(s) | 557, 735 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 158, 322, 540, 588, 718 |
| Bse1I | ACTGG | 2 cut(s) | 359, 583 |
| Bse8I | GATNNNNATC | 1 cut(s) | 629 |
| BseBI | CCWGG | 2 cut(s) | 411, 435 |
| BseDI | CCNNGG | 4 cut(s) | 116, 223, 410, 820 |
| BseGI | GGATG | 3 cut(s) | 221, 331, 355 |
| BseJI | GATNNNNATC | 1 cut(s) | 629 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 158, 322, 540, 588, 718 |
| BseMII | CTCAG | 1 cut(s) | 774 |
| BseNI | ACTGG | 2 cut(s) | 359, 583 |
| BseXI | GCAGC | 5 cut(s) | 351, 361, 394, 402, 409 |
| BsgI | GTGCAG | 1 cut(s) | 416 |
| Bsh1236I | CGCG | 1 cut(s) | 106 |
| BshNI | GGYRCC | 2 cut(s) | 12, 184 |
| BsiSI | CCGG | 3 cut(s) | 558, 589, 736 |
| BslFI | GGGAC | 5 cut(s) | 544, 600, 641, 651, 802 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 158, 322, 540, 588, 718 |
| BsmFI | GGGAC | 5 cut(s) | 544, 600, 641, 651, 802 |
| Bsp143I | GATC | 1 cut(s) | 199 |
| BspACI | CCGC | 3 cut(s) | 507, 579, 757 |
| BspCNI | CTCAG | 1 cut(s) | 773 |
| BspFNI | CGCG | 1 cut(s) | 106 |
| BspLI | GGNNCC | 7 cut(s) | 14, 186, 512, 532, 533, 679, 711 |
| BspMI | ACCTGC | 1 cut(s) | 24 |
| BspT107I | GGYRCC | 2 cut(s) | 12, 184 |
| BsrBI | CCGCTC | 2 cut(s) | 507, 759 |
| BsrI | ACTGG | 2 cut(s) | 359, 583 |
| BssECI | CCNNGG | 4 cut(s) | 116, 223, 410, 820 |
| BssMI | GATC | 1 cut(s) | 199 |
| BssT1I | CCWWGG | 2 cut(s) | 223, 820 |
| Bst2UI | CCWGG | 2 cut(s) | 411, 435 |
| Bst4CI | ACNGT | 2 cut(s) | 447, 655 |
| BstBAI | YACGTR | 2 cut(s) | 850, 875 |
| BstDEI | CTNAG | 1 cut(s) | 760 |
| BstF5I | GGATG | 3 cut(s) | 221, 331, 355 |
| BstFNI | CGCG | 1 cut(s) | 106 |
| BstH2I | RGCGCY | 1 cut(s) | 334 |
| BstHHI | GCGC | 1 cut(s) | 333 |
| BstKTI | GATC | 1 cut(s) | 202 |
| BstMBI | GATC | 1 cut(s) | 199 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 112, 225 |
| BstNI | CCWGG | 2 cut(s) | 411, 435 |
| BstNSI | RCATGY | 1 cut(s) | 309 |
| BstSCI | CCNGG | 2 cut(s) | 409, 433 |
| BstUI | CGCG | 1 cut(s) | 106 |
| BstV1I | GCAGC | 5 cut(s) | 351, 361, 394, 402, 409 |
| BtrI | CACGTC | 1 cut(s) | 389 |
| BtsCI | GGATG | 3 cut(s) | 221, 331, 355 |
| BtsIMutI | CAGTG | 1 cut(s) | 366 |
| BveI | ACCTGC | 1 cut(s) | 24 |
| CfoI | GCGC | 1 cut(s) | 333 |
| Cfr13I | GGNCC | 5 cut(s) | 166, 531, 560, 709, 738 |
| CpoI | CGGWCCG | 2 cut(s) | 560, 738 |
| CseI | GACGC | 3 cut(s) | 48, 133, 208 |
| Csp6I | GTAC | 4 cut(s) | 13, 185, 292, 407 |
| CspI | CGGWCCG | 2 cut(s) | 560, 738 |
| CviAII | CATG | 7 cut(s) | 181, 306, 344, 377, 495, 527, 706 |
| CviJI | RGCY | 8 cut(s) | 115, 228, 281, 352, 385, 415, 466, 592 |
| CviKI_1 | RGCY | 8 cut(s) | 115, 228, 281, 352, 385, 415, 466, 592 |
| CviQI | GTAC | 4 cut(s) | 13, 185, 292, 407 |
| DdeI | CTNAG | 1 cut(s) | 760 |
| DpnI | GATC | 1 cut(s) | 201 |
| DpnII | GATC | 1 cut(s) | 199 |
| DraIII | CACNNNGTG | 1 cut(s) | 814 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 45 |
| DriI | GACNNNNNGTC | 1 cut(s) | 861 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 45 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 861 |
| Eco130I | CCWWGG | 2 cut(s) | 223, 820 |
| Eco47I | GGWCC | 5 cut(s) | 166, 531, 560, 709, 738 |
| Eco47III | AGCGCT | 1 cut(s) | 332 |
| Eco72I | CACGTG | 2 cut(s) | 850, 875 |
| EcoO109I | RGGNCCY | 1 cut(s) | 531 |
| EcoRII | CCWGG | 2 cut(s) | 409, 433 |
| EcoT14I | CCWWGG | 2 cut(s) | 223, 820 |
| ErhI | CCWWGG | 2 cut(s) | 223, 820 |
| FaeI | CATG | 7 cut(s) | 184, 309, 347, 380, 498, 530, 709 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 804, 836 |
| FaqI | GGGAC | 5 cut(s) | 544, 600, 641, 651, 802 |
| FatI | CATG | 7 cut(s) | 180, 305, 343, 376, 494, 526, 705 |
| FauI | CCCGC | 3 cut(s) | 500, 586, 764 |
| FbaI | TGATCA | 1 cut(s) | 199 |
| Fnu4HI | GCNGC | 5 cut(s) | 350, 365, 383, 398, 416 |
| FokI | GGATG | 3 cut(s) | 228, 338, 342 |
| Fsp4HI | GCNGC | 5 cut(s) | 350, 365, 383, 398, 416 |
| GlaI | GCGC | 1 cut(s) | 332 |
| GluI | GCNGC | 5 cut(s) | 350, 365, 383, 398, 416 |
| HaeII | RGCGCY | 1 cut(s) | 334 |
| HapII | CCGG | 3 cut(s) | 558, 589, 736 |
| HgaI | GACGC | 3 cut(s) | 48, 133, 208 |
| HhaI | GCGC | 1 cut(s) | 333 |
| Hin1II | CATG | 7 cut(s) | 184, 309, 347, 380, 498, 530, 709 |
| Hin6I | GCGC | 1 cut(s) | 331 |
| HinP1I | GCGC | 1 cut(s) | 331 |
| HincII | GTYRAC | 1 cut(s) | 855 |
| HindII | GTYRAC | 1 cut(s) | 855 |
| HinfI | GANTC | 6 cut(s) | 237, 567, 661, 745, 839, 862 |
| HpaII | CCGG | 3 cut(s) | 558, 589, 736 |
| HphI | GGTGA | 3 cut(s) | 594, 772, 800 |
| Hpy166II | GTNNAC | 2 cut(s) | 254, 855 |
| Hpy188I | TCNGA | 6 cut(s) | 504, 564, 610, 742, 768, 797 |
| Hpy188III | TCNNGA | 5 cut(s) | 152, 234, 617, 658, 836 |
| Hpy8I | GTNNAC | 2 cut(s) | 254, 855 |
| Hpy99I | CGWCG | 1 cut(s) | 42 |
| HpyAV | CCTTC | 4 cut(s) | 3, 121, 158, 198 |
| HpyCH4III | ACNGT | 2 cut(s) | 447, 655 |
| HpyCH4IV | ACGT | 3 cut(s) | 388, 849, 874 |
| HpyCH4V | TGCA | 4 cut(s) | 19, 180, 397, 872 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 112, 225 |
| HpyF3I | CTNAG | 1 cut(s) | 760 |
| HpySE526I | ACGT | 3 cut(s) | 388, 849, 874 |
| Hsp92II | CATG | 7 cut(s) | 184, 309, 347, 380, 498, 530, 709 |
| HspAI | GCGC | 1 cut(s) | 331 |
| KflI | GGGWCCC | 1 cut(s) | 531 |
| KpnI | GGTACC | 2 cut(s) | 16, 188 |
| Ksp22I | TGATCA | 1 cut(s) | 199 |
| Kzo9I | GATC | 1 cut(s) | 199 |
| LmnI | GCTCC | 1 cut(s) | 278 |
| Lsp1109I | GCAGC | 5 cut(s) | 351, 361, 394, 402, 409 |
| LweI | GCATC | 1 cut(s) | 206 |
| MaeII | ACGT | 3 cut(s) | 388, 849, 874 |
| MaeIII | GTNAC | 2 cut(s) | 484, 806 |
| MalI | GATC | 1 cut(s) | 201 |
| MbiI | CCGCTC | 2 cut(s) | 507, 759 |
| MboI | GATC | 1 cut(s) | 199 |
| MboII | GAAGA | 1 cut(s) | 145 |
| MfeI | CAATTG | 2 cut(s) | 175, 641 |
| MluCI | AATT | 9 cut(s) | 50, 56, 88, 137, 175, 520, 641, 687, 699 |
| MlyI | GAGTC | 1 cut(s) | 871 |
| MmeI | TCCRAC | 2 cut(s) | 791, 869 |
| MnlI | CCTC | 4 cut(s) | 111, 524, 691, 873 |
| MroXI | GAANNNNTTC | 1 cut(s) | 137 |
| MseI | TTAA | 2 cut(s) | 87, 491 |
| MslI | CAYNNNNRTG | 2 cut(s) | 610, 788 |
| MspI | CCGG | 3 cut(s) | 558, 589, 736 |
| MspR9I | CCNGG | 2 cut(s) | 411, 435 |
| MunI | CAATTG | 2 cut(s) | 175, 641 |
| MvaI | CCWGG | 2 cut(s) | 411, 435 |
| MvnI | CGCG | 1 cut(s) | 106 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 112, 225 |
| NdeII | GATC | 1 cut(s) | 199 |
| NlaIII | CATG | 7 cut(s) | 184, 309, 347, 380, 498, 530, 709 |
| NlaIV | GGNNCC | 7 cut(s) | 14, 186, 512, 532, 533, 679, 711 |
| NmeAIII | GCCGAG | 1 cut(s) | 141 |
| NmuCI | GTSAC | 2 cut(s) | 484, 806 |
| NspI | RCATGY | 1 cut(s) | 309 |
| PciI | ACATGT | 1 cut(s) | 305 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 560 |
| PdmI | GAANNNNTTC | 1 cut(s) | 137 |
| PfeI | GAWTC | 5 cut(s) | 237, 567, 661, 745, 839 |
| PkrI | GCNGC | 5 cut(s) | 351, 366, 384, 399, 417 |
| PleI | GAGTC | 1 cut(s) | 870 |
| PmaCI | CACGTG | 2 cut(s) | 850, 875 |
| PmlI | CACGTG | 2 cut(s) | 850, 875 |
| PpsI | GAGTC | 1 cut(s) | 870 |
| Ppu21I | YACGTR | 2 cut(s) | 850, 875 |
| PpuMI | RGGWCCY | 1 cut(s) | 531 |
| PscI | ACATGT | 1 cut(s) | 305 |
| Psp5II | RGGWCCY | 1 cut(s) | 531 |
| Psp6I | CCWGG | 2 cut(s) | 409, 433 |
| PspCI | CACGTG | 2 cut(s) | 850, 875 |
| PspGI | CCWGG | 2 cut(s) | 409, 433 |
| PspN4I | GGNNCC | 7 cut(s) | 14, 186, 512, 532, 533, 679, 711 |
| PspPI | GGNCC | 5 cut(s) | 166, 531, 560, 709, 738 |
| PspPPI | RGGWCCY | 1 cut(s) | 531 |
| RsaI | GTAC | 4 cut(s) | 14, 186, 293, 408 |
| RsaNI | GTAC | 4 cut(s) | 13, 185, 292, 407 |
| RseI | CAYNNNNRTG | 2 cut(s) | 610, 788 |
| Rsr2I | CGGWCCG | 2 cut(s) | 560, 738 |
| RsrII | CGGWCCG | 2 cut(s) | 560, 738 |
| SaqAI | TTAA | 2 cut(s) | 87, 491 |
| SatI | GCNGC | 5 cut(s) | 350, 365, 383, 398, 416 |
| Sau3AI | GATC | 1 cut(s) | 199 |
| Sau96I | GGNCC | 5 cut(s) | 166, 531, 560, 709, 738 |
| SchI | GAGTC | 1 cut(s) | 871 |
| ScrFI | CCNGG | 2 cut(s) | 411, 435 |
| SfaNI | GCATC | 1 cut(s) | 206 |
| SinI | GGWCC | 5 cut(s) | 166, 531, 560, 709, 738 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 610, 788 |
| SmlI | CTYRAG | 3 cut(s) | 43, 232, 859 |
| SmoI | CTYRAG | 3 cut(s) | 43, 232, 859 |
| Sse9I | AATT | 9 cut(s) | 50, 56, 88, 137, 175, 520, 641, 687, 699 |
| SsiI | CCGC | 3 cut(s) | 507, 579, 757 |
| SspI | AATATT | 1 cut(s) | 75 |
| StyD4I | CCNGG | 2 cut(s) | 409, 433 |
| StyI | CCWWGG | 2 cut(s) | 223, 820 |
| TaaI | ACNGT | 2 cut(s) | 447, 655 |
| TaiI | ACGT | 3 cut(s) | 391, 852, 877 |
| TasI | AATT | 9 cut(s) | 50, 56, 88, 137, 175, 520, 641, 687, 699 |
| TatI | WGTACW | 1 cut(s) | 291 |
| TfiI | GAWTC | 5 cut(s) | 237, 567, 661, 745, 839 |
| Tru1I | TTAA | 2 cut(s) | 87, 491 |
| Tru9I | TTAA | 2 cut(s) | 87, 491 |
| TscAI | CASTG | 1 cut(s) | 366 |
| TseFI | GTSAC | 2 cut(s) | 484, 806 |
| TseI | GCWGC | 5 cut(s) | 349, 364, 382, 397, 415 |
| Tsp45I | GTSAC | 2 cut(s) | 484, 806 |
| TspDTI | ATGAA | 7 cut(s) | 325, 474, 535, 638, 653, 713, 831 |
| TspGWI | ACGGA | 2 cut(s) | 139, 228 |
| TspRI | CASTG | 1 cut(s) | 366 |
| VpaK11BI | GGWCC | 5 cut(s) | 166, 531, 560, 709, 738 |
| XapI | RAATTY | 1 cut(s) | 137 |
| XceI | RCATGY | 1 cut(s) | 309 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 818 |
| XmnI | GAANNNNTTC | 1 cut(s) | 137 |