FvH4_7g03301

RIBOSOMAL protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
3640105 .. 3641922
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g03301.t1

Sequence Viewer

Length: 702 bp
ATGGCGGCCGGTGATGAAGCTATGGAGGCTATTAGAGGCGGATGTCTACACGCCCTTAAAGTGCGGACGTCCCTCCGTTCTCCACCATACGGCTCCGATAACGGTGTGCCTCCACCCTACAGTCCTCCAGCAGCGTCCCCGATCACTTTTCCTCCCCGGCGAGGGACGCTGCTGGAGTCTTTTGGGGTGGAGGCGCGCCGTATTTGGCGCCAGACGGTGGCGAACGGAGGGACGTGCGCTTCATATCAGTCGAGATCACAGACGGACGTCCGCAAACCCGTAAAAAGTGCTGACGTCCCTGTTTTTGCAGCGATCAAGCGCCGACGACGACCCTTCTCTTCCCGGACGGACACTAGAGGCATCCCGGACTTGTTTGACATGAAGATGAAGGCCATGGAGATCGGAGTTGAAGGTCTGGGCAGCAACCTCCACCCAAAACTTCAGACAACATCAATCTCGGCTGCAAACTGGTATTCGACGAGTCCGCCGGCAAGAGGAAGCTCACGATCGAGGTCTGGTGATAGGCGCAAAAGCACCTACAAAGATACCCTATTATCAAATCAATTATATCAATGTAGTAAATGGCAAATAGGGGTCATTACCCGCAGAGGATTGGTGATACTAAGACTTAAACACACAAGAAACACAAACAGACGCGTAAACCAGAAATCTGGCAGACTCGACCTAGGAGCAGAAACCTAA

Protein Analysis

234

Amino Acids

25.73

Weight (kDa)

11.01

Isoelectric Point (pI)

65.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 71, 270, 297
AccB1I GGYRCC 1 cut(s) 207
AccB7I CCANNNNNTGG 1 cut(s) 217
AccI GTMKAC 1 cut(s) 46
AccII CGCG 2 cut(s) 196, 657
AciI CCGC 6 cut(s) 5, 39, 64, 271, 485, 604
AcoI YGGCCR 1 cut(s) 6
AcuI CTGAAG 1 cut(s) 425
AcyI GRCGYC 4 cut(s) 68, 208, 267, 294
AfiI CCNNNNNNNGG 5 cut(s) 89, 161, 162, 217, 494
AflIII ACRYGT 1 cut(s) 655
AgsI TTSAA 1 cut(s) 410
AjiI CACGTC 1 cut(s) 234
AluBI AGCT 2 cut(s) 20, 501
AluI AGCT 2 cut(s) 20, 501
AoxI GGCC 2 cut(s) 6, 390
ApeKI GCWGC 5 cut(s) 131, 169, 308, 420, 461
AscI GGCGCGCC 1 cut(s) 194
AspA2I CCTAGG 1 cut(s) 685
AspLEI GCGC 6 cut(s) 196, 198, 210, 239, 321, 528
AsuC2I CCSGG 3 cut(s) 157, 343, 365
AsuHPI GGTGA 3 cut(s) 23, 530, 628
AvrII CCTAGG 1 cut(s) 685
BanI GGYRCC 1 cut(s) 207
BbvI GCAGC 5 cut(s) 143, 156, 320, 432, 448
BceAI ACGGC 2 cut(s) 106, 183
BcnI CCSGG 3 cut(s) 157, 343, 365
BfaI CTAG 2 cut(s) 354, 686
BfmI CTRYAG 1 cut(s) 118
BfoI RGCGCY 2 cut(s) 211, 322
BisI GCNGC 6 cut(s) 6, 132, 170, 309, 421, 462
BlnI CCTAGG 1 cut(s) 685
BlsI GCNGC 6 cut(s) 7, 133, 171, 310, 422, 463
Bme1390I CCNGG 3 cut(s) 157, 343, 365
BmgBI CACGTC 1 cut(s) 234
BmiI GGNNCC 2 cut(s) 94, 209
BmrFI CCNGG 3 cut(s) 157, 343, 365
BmsI GCATC 1 cut(s) 369
BoxI GACNNNNGTC 1 cut(s) 266
BpmI CTGGAG 2 cut(s) 111, 194
BpuMI CCSGG 3 cut(s) 157, 343, 365
BsaHI GRCGYC 4 cut(s) 68, 208, 267, 294
BsaJI CCNNGG 3 cut(s) 155, 393, 685
BsaXI ACNNNNNCTCC 2 cut(s) 136, 166
Bsc4I CCNNNNNNNGG 5 cut(s) 89, 161, 162, 217, 494
Bse118I RCCGGY 2 cut(s) 8, 487
Bse1I ACTGG 1 cut(s) 473
BseDI CCNNGG 3 cut(s) 155, 393, 685
BseGI GGATG 2 cut(s) 47, 360
BseLI CCNNNNNNNGG 5 cut(s) 89, 161, 162, 217, 494
BseNI ACTGG 1 cut(s) 473
BsePI GCGCGC 1 cut(s) 194
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 5 cut(s) 143, 156, 320, 432, 448
Bsh1236I CGCG 2 cut(s) 196, 657
Bsh1285I CGRYCG 2 cut(s) 9, 509
BshFI GGCC 2 cut(s) 8, 392
BshNI GGYRCC 1 cut(s) 207
BsiEI CGRYCG 2 cut(s) 9, 509
BsiSI CCGG 5 cut(s) 9, 157, 343, 365, 488
BslFI GGGAC 5 cut(s) 55, 121, 178, 244, 281
BslI CCNNNNNNNGG 5 cut(s) 89, 161, 162, 217, 494
BsmFI GGGAC 5 cut(s) 55, 121, 178, 244, 281
BsnI GGCC 2 cut(s) 8, 392
Bsp143I GATC 5 cut(s) 141, 254, 312, 399, 506
Bsp19I CCATGG 1 cut(s) 393
BspACI CCGC 6 cut(s) 5, 39, 64, 271, 485, 604
BspANI GGCC 2 cut(s) 8, 392
BspFNI CGCG 2 cut(s) 196, 657
BspLI GGNNCC 2 cut(s) 94, 209
BspT107I GGYRCC 1 cut(s) 207
BsrFI RCCGGY 2 cut(s) 8, 487
BsrI ACTGG 1 cut(s) 473
BssAI RCCGGY 2 cut(s) 8, 487
BssECI CCNNGG 3 cut(s) 155, 393, 685
BssHII GCGCGC 1 cut(s) 194
BssMI GATC 5 cut(s) 141, 254, 312, 399, 506
BssNI GRCGYC 4 cut(s) 68, 208, 267, 294
BssT1I CCWWGG 2 cut(s) 393, 685
Bst4CI ACNGT 3 cut(s) 104, 122, 217
Bst6I CTCTTC 1 cut(s) 343
BstACI GRCGYC 4 cut(s) 68, 208, 267, 294
BstC8I GCNNGC 2 cut(s) 196, 489
BstDEI CTNAG 1 cut(s) 623
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 2 cut(s) 47, 360
BstFNI CGCG 2 cut(s) 196, 657
BstH2I RGCGCY 2 cut(s) 211, 322
BstHHI GCGC 6 cut(s) 196, 198, 210, 239, 321, 528
BstKTI GATC 5 cut(s) 144, 257, 315, 402, 509
BstMBI GATC 5 cut(s) 141, 254, 312, 399, 506
BstMCI CGRYCG 2 cut(s) 9, 509
BstMWI GCNNNNNNNGC 2 cut(s) 26, 166
BstPAI GACNNNNGTC 1 cut(s) 266
BstSCI CCNGG 3 cut(s) 155, 341, 363
BstSFI CTRYAG 1 cut(s) 118
BstUI CGCG 2 cut(s) 196, 657
BstV1I GCAGC 5 cut(s) 143, 156, 320, 432, 448
BstXI CCANNNNNNTGG 1 cut(s) 671
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 2 cut(s) 8, 392
BtgI CCRYGG 1 cut(s) 393
BtrI CACGTC 1 cut(s) 234
BtsCI GGATG 2 cut(s) 47, 360
Cac8I GCNNGC 2 cut(s) 196, 489
CfoI GCGC 6 cut(s) 196, 198, 210, 239, 321, 528
Cfr10I RCCGGY 2 cut(s) 8, 487
CseI GACGC 3 cut(s) 123, 175, 663
CviAII CATG 2 cut(s) 379, 394
CviJI RGCY 7 cut(s) 8, 20, 29, 93, 392, 461, 501
CviKI_1 RGCY 7 cut(s) 8, 20, 29, 93, 392, 461, 501
DdeI CTNAG 1 cut(s) 623
DinI GGCGCC 1 cut(s) 209
DpnI GATC 5 cut(s) 143, 256, 314, 401, 508
DpnII GATC 5 cut(s) 141, 254, 312, 399, 506
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 343
EarI CTCTTC 1 cut(s) 343
EciI GGCGGA 2 cut(s) 54, 474
EclXI CGGCCG 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 393, 685
Eco52I CGGCCG 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 425
EcoT14I CCWWGG 2 cut(s) 393, 685
EgeI GGCGCC 1 cut(s) 209
EheI GGCGCC 1 cut(s) 209
ErhI CCWWGG 2 cut(s) 393, 685
FaeI CATG 2 cut(s) 382, 397
FaiI YATR 6 cut(s) 23, 88, 244, 380, 395, 568
FaqI GGGAC 5 cut(s) 55, 121, 178, 244, 281
FatI CATG 2 cut(s) 378, 393
FauI CCCGC 1 cut(s) 611
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 6 cut(s) 6, 132, 170, 309, 421, 462
FokI GGATG 2 cut(s) 54, 347
Fsp4HI GCNGC 6 cut(s) 6, 132, 170, 309, 421, 462
FspBI CTAG 2 cut(s) 354, 686
GlaI GCGC 6 cut(s) 195, 197, 209, 238, 320, 527
GluI GCNGC 6 cut(s) 6, 132, 170, 309, 421, 462
GsuI CTGGAG 2 cut(s) 111, 194
HaeII RGCGCY 2 cut(s) 211, 322
HaeIII GGCC 2 cut(s) 8, 392
HapII CCGG 5 cut(s) 9, 157, 343, 365, 488
HgaI GACGC 3 cut(s) 123, 175, 663
HhaI GCGC 6 cut(s) 196, 198, 210, 239, 321, 528
Hin1I GRCGYC 4 cut(s) 68, 208, 267, 294
Hin1II CATG 2 cut(s) 382, 397
Hin6I GCGC 6 cut(s) 194, 196, 208, 237, 319, 526
HinP1I GCGC 6 cut(s) 194, 196, 208, 237, 319, 526
HinfI GANTC 3 cut(s) 176, 481, 678
HpaII CCGG 5 cut(s) 9, 157, 343, 365, 488
HphI GGTGA 3 cut(s) 23, 530, 628
Hpy166II GTNNAC 2 cut(s) 47, 661
Hpy188I TCNGA 3 cut(s) 97, 404, 444
Hpy188III TCNNGA 2 cut(s) 252, 504
Hpy8I GTNNAC 2 cut(s) 47, 661
Hpy99I CGWCG 3 cut(s) 327, 330, 481
HpyAV CCTTC 3 cut(s) 343, 382, 404
HpyCH4III ACNGT 3 cut(s) 104, 122, 217
HpyCH4IV ACGT 4 cut(s) 68, 233, 267, 294
HpyCH4V TGCA 2 cut(s) 308, 464
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 166
HpyF3I CTNAG 1 cut(s) 623
HpySE526I ACGT 4 cut(s) 68, 233, 267, 294
Hsp92I GRCGYC 4 cut(s) 68, 208, 267, 294
Hsp92II CATG 2 cut(s) 382, 397
HspAI GCGC 6 cut(s) 194, 196, 208, 237, 319, 526
KasI GGCGCC 1 cut(s) 207
KroI GCCGGC 1 cut(s) 487
KroNI GCCGGC 1 cut(s) 489
Kzo9I GATC 5 cut(s) 141, 254, 312, 399, 506
LmnI GCTCC 2 cut(s) 98, 689
Lsp1109I GCAGC 5 cut(s) 143, 156, 320, 432, 448
LweI GCATC 1 cut(s) 369
MaeI CTAG 2 cut(s) 354, 686
MaeII ACGT 4 cut(s) 68, 233, 267, 294
MalI GATC 5 cut(s) 143, 256, 314, 401, 508
MboI GATC 5 cut(s) 141, 254, 312, 399, 506
MboII GAAGA 2 cut(s) 330, 394
MluCI AATT 1 cut(s) 563
MluI ACGCGT 1 cut(s) 655
Mly113I GGCGCC 1 cut(s) 208
MlyI GAGTC 3 cut(s) 185, 490, 672
MroNI GCCGGC 1 cut(s) 487
MseI TTAA 2 cut(s) 57, 630
MslI CAYNNNNRTG 1 cut(s) 383
MspI CCGG 5 cut(s) 9, 157, 343, 365, 488
MspR9I CCNGG 3 cut(s) 157, 343, 365
MvnI CGCG 2 cut(s) 196, 657
MwoI GCNNNNNNNGC 2 cut(s) 26, 166
NaeI GCCGGC 1 cut(s) 489
NarI GGCGCC 1 cut(s) 208
NciI CCSGG 3 cut(s) 157, 343, 365
NcoI CCATGG 1 cut(s) 393
NdeII GATC 5 cut(s) 141, 254, 312, 399, 506
NgoMIV GCCGGC 1 cut(s) 487
NlaIII CATG 2 cut(s) 382, 397
NlaIV GGNNCC 2 cut(s) 94, 209
NmeAIII GCCGAG 1 cut(s) 437
PalAI GGCGCGCC 1 cut(s) 194
PauI GCGCGC 1 cut(s) 194
PdiI GCCGGC 1 cut(s) 489
PflMI CCANNNNNTGG 1 cut(s) 217
PfoI TCCNGGA 2 cut(s) 341, 363
PkrI GCNGC 6 cut(s) 7, 133, 171, 310, 422, 463
Ple19I CGATCG 1 cut(s) 509
PleI GAGTC 3 cut(s) 184, 489, 672
PluTI GGCGCC 1 cut(s) 211
PpsI GAGTC 3 cut(s) 184, 489, 672
PshAI GACNNNNGTC 1 cut(s) 266
PspN4I GGNNCC 2 cut(s) 94, 209
PteI GCGCGC 1 cut(s) 194
PvuI CGATCG 1 cut(s) 509
RseI CAYNNNNRTG 1 cut(s) 383
SaqAI TTAA 2 cut(s) 57, 630
SatI GCNGC 6 cut(s) 6, 132, 170, 309, 421, 462
Sau3AI GATC 5 cut(s) 141, 254, 312, 399, 506
SchI GAGTC 3 cut(s) 185, 490, 672
ScrFI CCNGG 3 cut(s) 157, 343, 365
SfaNI GCATC 1 cut(s) 369
SfcI CTRYAG 1 cut(s) 118
SfoI GGCGCC 1 cut(s) 209
SgsI GGCGCGCC 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 383
Sse9I AATT 1 cut(s) 563
SsiI CCGC 6 cut(s) 5, 39, 64, 271, 485, 604
SspDI GGCGCC 1 cut(s) 207
SspMI CTAG 2 cut(s) 354, 686
StyD4I CCNGG 3 cut(s) 155, 341, 363
StyI CCWWGG 2 cut(s) 393, 685
TaaI ACNGT 3 cut(s) 104, 122, 217
TaiI ACGT 4 cut(s) 71, 236, 270, 297
TaqI TCGA 4 cut(s) 251, 476, 509, 681
TasI AATT 1 cut(s) 563
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 57, 630
Tru9I TTAA 2 cut(s) 57, 630
TseI GCWGC 5 cut(s) 131, 169, 308, 420, 461
TspDTI ATGAA 4 cut(s) 30, 231, 395, 401
TspGWI ACGGA 4 cut(s) 65, 240, 278, 362
Van91I CCANNNNNTGG 1 cut(s) 217
XmaJI CCTAGG 1 cut(s) 685
XmiI GTMKAC 1 cut(s) 46
XspI CTAG 2 cut(s) 354, 686
ZraI GACGTC 3 cut(s) 69, 268, 295
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.