FvH4_4g00090

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000118
Physical Location & Seq
Forward (+)
101017 .. 108549
7533 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g00090.t1

Sequence Viewer

Length: 1140 bp
ATGTCCCTCCTTTCGCCACCGTACGGCACCGGCGAGCATCAGCGAGGGCGCGCCTCCACCCTAGTGGACTCCAGCAGCTTCCCCGACCTCTTTCCATCTCCAGCTAGTCTGCCAAATTCCAGTTTTCCGGCCAGATCACCCAAAACTTTAAACAAAGTCAATCTAGCCGGAAAACTGAAATTCGGCGGACTCATCGGGGATGGAAAGAGGTCGGGGAAGCTGCTGGAGTCCGCTGTGGTGGAGGCGCGCCCTCGCCGGCGCCGTACGGTGGCGAACGGAGGGAAATCCGCACCGAGATCTGACTTAGCTTCAAGCGCTTTCTCGGACCCTCATACAGAGATACCTGGAGAATCAATTGTTATGAGGGATGAAAATCTTTCTAGATCAAATGATCTTGCATATAACAACAATCTTTGGATTGGGGATCCCCCATGGTGGGTTGAAGAGTTCAAAGCTGGCAAATGCATGATATTAAACAGTCTTGCTGAGATGTATGACAAATCAGAATCAAGAGGAAACTTGTCTGGAATTCTGCGCAGTACTGTCATGGAGTGTCAACATTCTCTAGATTCAAGTTCTAACTGTTGGATTCAAGCTGTAGACAGCTTCTCTGAACTTCTCAGGCAGTATGTTACTTTAAAGATCGACTCAGATATCGAAGAGATCTATGTTTGTTTTCGGCTTCTCAGGAGGGAAAAACCAAAGCTTGCTGAAAGAAAGTACCAAGAGAGAATGGAGCCAGCTGATCATGATTCTCCACACTTTTCAGACATGGAACCTGAGTTTCATTCAATGTCAAGATGGTGTAATAATTCTAGAAGGCTGTGGAAGAAGCTGCTGGAAGCACAAGAACTTGCACTTGAACTTGAGAGTAGGCTGGCTCAGCTGCATTTTACGCGAAAGCCAGTTGCAAATCAGCCCTATTCTGGTTACCTAATGGATGGGCGAATGGTCTCTGAAGATAATTTCAACGTCCCACCAGCAGAATGTTTTGATTTTCTGTTAGATGTTATAAACAATGGGTCTACAAGTGATAATAAACCCAAAAAAACAGGCACCAACTACACTGACCAGGACAGTCGAGGACTTGATCTCCCAGATAGCCCATTTGCAACTTCGATAGTTTCAGCGGTCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
OST-HTH RRM_1 zf-CCCH

Protein Analysis

380

Amino Acids

42.5

Weight (kDa)

6.05

Isoelectric Point (pI)

62.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1013
Acc16I TGCGCA 1 cut(s) 536
AccB1I GGYRCC 3 cut(s) 26, 258, 1055
AccI GTMKAC 2 cut(s) 600, 1025
AccII CGCG 3 cut(s) 51, 247, 898
AciI CCGC 4 cut(s) 186, 231, 288, 1130
AclWI GGATC 2 cut(s) 419, 432
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 3 cut(s) 115, 179, 528
AcuI CTGAAG 1 cut(s) 978
AcyI GRCGYC 1 cut(s) 259
AfaI GTAC 4 cut(s) 23, 265, 541, 722
AfeI AGCGCT 1 cut(s) 316
AfiI CCNNNNNNNGG 5 cut(s) 23, 268, 435, 436, 926
AgsI TTSAA 8 cut(s) 312, 443, 451, 573, 593, 792, 863, 970
AjnI CCWGG 2 cut(s) 343, 1071
AleI CACNNNNGTG 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 958
AlwI GGATC 2 cut(s) 419, 432
Aor51HI AGCGCT 1 cut(s) 316
AoxI GGCC 1 cut(s) 129
ApeKI GCWGC 4 cut(s) 75, 220, 835, 886
ApoI RAATTY 3 cut(s) 115, 179, 528
AscI GGCGCGCC 2 cut(s) 49, 245
AspLEI GCGC 7 cut(s) 51, 53, 247, 249, 261, 317, 537
AspS9I GGNCC 1 cut(s) 325
AsuHPI GGTGA 1 cut(s) 129
AvaII GGWCC 1 cut(s) 325
BamHI GGATCC 1 cut(s) 424
BanI GGYRCC 3 cut(s) 26, 258, 1055
BbvI GCAGC 4 cut(s) 87, 207, 822, 873
BccI CCATC 4 cut(s) 103, 194, 795, 935
BceAI ACGGC 2 cut(s) 40, 246
BciT130I CCWGG 2 cut(s) 345, 1073
BclI TGATCA 1 cut(s) 745
BcoDI GTCTC 1 cut(s) 958
BfaI CTAG 6 cut(s) 62, 105, 164, 381, 566, 816
BfmI CTRYAG 1 cut(s) 597
BfoI RGCGCY 2 cut(s) 262, 318
BglII AGATCT 2 cut(s) 296, 663
BisI GCNGC 4 cut(s) 76, 221, 836, 887
BlpI GCTNAGC 1 cut(s) 882
BlsI GCNGC 4 cut(s) 77, 222, 837, 888
BmcAI AGTACT 1 cut(s) 541
Bme1390I CCNGG 2 cut(s) 345, 1073
Bme18I GGWCC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 325
BmiI GGNNCC 7 cut(s) 28, 260, 327, 426, 738, 777, 1057
BmrFI CCNGG 2 cut(s) 345, 1073
BmsI GCATC 1 cut(s) 46
BpmI CTGGAG 4 cut(s) 55, 84, 245, 366
Bpu1102I GCTNAGC 1 cut(s) 882
BpuEI CTTGAG 1 cut(s) 887
BsaBI GATNNNNATC 1 cut(s) 372
BsaHI GRCGYC 1 cut(s) 259
BsaI GGTCTC 1 cut(s) 958
BsaJI CCNNGG 1 cut(s) 431
BsaXI ACNNNNNCTCC 2 cut(s) 1077, 1107
Bsc4I CCNNNNNNNGG 5 cut(s) 23, 268, 435, 436, 926
Bse118I RCCGGY 2 cut(s) 29, 255
Bse1I ACTGG 2 cut(s) 120, 905
Bse8I GATNNNNATC 1 cut(s) 372
BseBI CCWGG 2 cut(s) 345, 1073
BseDI CCNNGG 1 cut(s) 431
BseGI GGATG 3 cut(s) 205, 373, 946
BseJI GATNNNNATC 1 cut(s) 372
BseLI CCNNNNNNNGG 5 cut(s) 23, 268, 435, 436, 926
BseMII CTCAG 6 cut(s) 477, 634, 663, 700, 771, 896
BseNI ACTGG 2 cut(s) 120, 905
BsePI GCGCGC 2 cut(s) 49, 245
BseXI GCAGC 4 cut(s) 87, 207, 822, 873
Bsh1236I CGCG 3 cut(s) 51, 247, 898
BshFI GGCC 1 cut(s) 131
BshNI GGYRCC 3 cut(s) 26, 258, 1055
BsiSI CCGG 4 cut(s) 30, 128, 168, 256
BsiWI CGTACG 2 cut(s) 21, 263
BslFI GGGAC 1 cut(s) 959
BslI CCNNNNNNNGG 5 cut(s) 23, 268, 435, 436, 926
BsmAI GTCTC 1 cut(s) 958
BsmFI GGGAC 1 cut(s) 959
BsnI GGCC 1 cut(s) 131
Bso31I GGTCTC 1 cut(s) 958
Bsp143I GATC 9 cut(s) 134, 296, 383, 391, 424, 642, 663, 745, 1090
Bsp1720I GCTNAGC 1 cut(s) 882
Bsp19I CCATGG 1 cut(s) 431
BspACI CCGC 4 cut(s) 186, 231, 288, 1130
BspANI GGCC 1 cut(s) 131
BspCNI CTCAG 6 cut(s) 478, 633, 662, 699, 772, 895
BspFNI CGCG 3 cut(s) 51, 247, 898
BspHI TCATGA 1 cut(s) 748
BspLI GGNNCC 7 cut(s) 28, 260, 327, 426, 738, 777, 1057
BspPI GGATC 2 cut(s) 419, 432
BspT107I GGYRCC 3 cut(s) 26, 258, 1055
BspTNI GGTCTC 1 cut(s) 958
BsrFI RCCGGY 2 cut(s) 29, 255
BsrI ACTGG 2 cut(s) 120, 905
BssAI RCCGGY 2 cut(s) 29, 255
BssECI CCNNGG 1 cut(s) 431
BssHII GCGCGC 2 cut(s) 49, 245
BssMI GATC 9 cut(s) 134, 296, 383, 391, 424, 642, 663, 745, 1090
BssNI GRCGYC 1 cut(s) 259
BssT1I CCWWGG 1 cut(s) 431
Bst2UI CCWGG 2 cut(s) 345, 1073
Bst4CI ACNGT 6 cut(s) 21, 268, 479, 544, 584, 1079
Bst6I CTCTTC 2 cut(s) 438, 654
BstACI GRCGYC 1 cut(s) 259
BstC8I GCNNGC 8 cut(s) 35, 51, 247, 257, 457, 708, 741, 879
BstDEI CTNAG 7 cut(s) 304, 486, 620, 649, 686, 780, 882
BstDSI CCRYGG 1 cut(s) 431
BstEII GGTNACC 1 cut(s) 929
BstF5I GGATG 3 cut(s) 205, 373, 946
BstFNI CGCG 3 cut(s) 51, 247, 898
BstH2I RGCGCY 2 cut(s) 262, 318
BstHHI GCGC 7 cut(s) 51, 53, 247, 249, 261, 317, 537
BstKTI GATC 9 cut(s) 137, 299, 386, 394, 427, 645, 666, 748, 1093
BstMAI GTCTC 1 cut(s) 958
BstMBI GATC 9 cut(s) 134, 296, 383, 391, 424, 642, 663, 745, 1090
BstMWI GCNNNNNNNGC 3 cut(s) 314, 883, 895
BstNI CCWGG 2 cut(s) 345, 1073
BstPI GGTNACC 1 cut(s) 929
BstSCI CCNGG 2 cut(s) 343, 1071
BstSFI CTRYAG 1 cut(s) 597
BstUI CGCG 3 cut(s) 51, 247, 898
BstV1I GCAGC 4 cut(s) 87, 207, 822, 873
BstX2I RGATCY 3 cut(s) 296, 424, 663
BstXI CCANNNNNNTGG 1 cut(s) 64
BstYI RGATCY 3 cut(s) 296, 424, 663
BsuRI GGCC 1 cut(s) 131
BtgI CCRYGG 1 cut(s) 431
BtsCI GGATG 3 cut(s) 205, 373, 946
BtsIMutI CAGTG 1 cut(s) 1065
Cac8I GCNNGC 8 cut(s) 35, 51, 247, 257, 457, 708, 741, 879
CciI TCATGA 1 cut(s) 748
CfoI GCGC 7 cut(s) 51, 53, 247, 249, 261, 317, 537
Cfr10I RCCGGY 2 cut(s) 29, 255
Cfr13I GGNCC 1 cut(s) 325
Csp6I GTAC 4 cut(s) 22, 264, 540, 721
CviAII CATG 5 cut(s) 432, 466, 547, 749, 772
CviQI GTAC 4 cut(s) 22, 264, 540, 721
DdeI CTNAG 7 cut(s) 304, 486, 620, 649, 686, 780, 882
DinI GGCGCC 1 cut(s) 260
DpnI GATC 9 cut(s) 136, 298, 385, 393, 426, 644, 665, 747, 1092
DpnII GATC 9 cut(s) 134, 296, 383, 391, 424, 642, 663, 745, 1090
DraI TTTAAA 2 cut(s) 150, 639
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 2 cut(s) 438, 654
EarI CTCTTC 2 cut(s) 438, 654
EciI GGCGGA 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 431
Eco31I GGTCTC 1 cut(s) 958
Eco32I GATATC 1 cut(s) 655
Eco47I GGWCC 1 cut(s) 325
Eco47III AGCGCT 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 978
Eco91I GGTNACC 1 cut(s) 929
EcoO65I GGTNACC 1 cut(s) 929
EcoRI GAATTC 1 cut(s) 528
EcoRII CCWGG 2 cut(s) 343, 1071
EcoRV GATATC 1 cut(s) 655
EcoT14I CCWWGG 1 cut(s) 431
EcoT22I ATGCAT 1 cut(s) 467
EgeI GGCGCC 1 cut(s) 260
EheI GGCGCC 1 cut(s) 260
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 5 cut(s) 435, 469, 550, 752, 775
FaqI GGGAC 1 cut(s) 959
FatI CATG 5 cut(s) 431, 465, 546, 748, 771
FbaI TGATCA 1 cut(s) 745
FblI GTMKAC 2 cut(s) 600, 1025
Fnu4HI GCNGC 4 cut(s) 76, 221, 836, 887
FokI GGATG 3 cut(s) 212, 380, 953
Fsp4HI GCNGC 4 cut(s) 76, 221, 836, 887
FspBI CTAG 6 cut(s) 62, 105, 164, 381, 566, 816
FspI TGCGCA 1 cut(s) 536
GlaI GCGC 7 cut(s) 50, 52, 246, 248, 260, 316, 536
GluI GCNGC 4 cut(s) 76, 221, 836, 887
GsuI CTGGAG 4 cut(s) 55, 84, 245, 366
HaeII RGCGCY 2 cut(s) 262, 318
HaeIII GGCC 1 cut(s) 131
HapII CCGG 4 cut(s) 30, 128, 168, 256
HhaI GCGC 7 cut(s) 51, 53, 247, 249, 261, 317, 537
Hin1I GRCGYC 1 cut(s) 259
Hin1II CATG 5 cut(s) 435, 469, 550, 752, 775
Hin6I GCGC 7 cut(s) 49, 51, 245, 247, 259, 315, 535
HinP1I GCGC 7 cut(s) 49, 51, 245, 247, 259, 315, 535
HincII GTYRAC 1 cut(s) 557
HindII GTYRAC 1 cut(s) 557
HindIII AAGCTT 1 cut(s) 704
HinfI GANTC 9 cut(s) 68, 189, 227, 350, 506, 569, 589, 647, 752
HpaII CCGG 4 cut(s) 30, 128, 168, 256
HphI GGTGA 1 cut(s) 129
Hpy166II GTNNAC 4 cut(s) 67, 557, 601, 1026
Hpy188I TCNGA 7 cut(s) 301, 325, 505, 613, 652, 769, 958
Hpy188III TCNNGA 8 cut(s) 381, 510, 525, 566, 688, 749, 798, 816
Hpy8I GTNNAC 4 cut(s) 67, 557, 601, 1026
HpyAV CCTTC 1 cut(s) 813
HpyCH4III ACNGT 6 cut(s) 21, 268, 479, 544, 584, 1079
HpyCH4IV ACGT 1 cut(s) 972
HpyCH4V TGCA 6 cut(s) 398, 465, 857, 889, 911, 1112
HpyF10VI GCNNNNNNNGC 3 cut(s) 314, 883, 895
HpyF3I CTNAG 7 cut(s) 304, 486, 620, 649, 686, 780, 882
HpySE526I ACGT 1 cut(s) 972
Hsp92I GRCGYC 1 cut(s) 259
Hsp92II CATG 5 cut(s) 435, 469, 550, 752, 775
HspAI GCGC 7 cut(s) 49, 51, 245, 247, 259, 315, 535
KasI GGCGCC 1 cut(s) 258
KroI GCCGGC 1 cut(s) 255
KroNI GCCGGC 1 cut(s) 257
Ksp22I TGATCA 1 cut(s) 745
Kzo9I GATC 9 cut(s) 134, 296, 383, 391, 424, 642, 663, 745, 1090
LmnI GCTCC 1 cut(s) 736
Lsp1109I GCAGC 4 cut(s) 87, 207, 822, 873
LweI GCATC 1 cut(s) 46
MaeI CTAG 6 cut(s) 62, 105, 164, 381, 566, 816
MaeII ACGT 1 cut(s) 972
MaeIII GTNAC 2 cut(s) 631, 929
MalI GATC 9 cut(s) 136, 298, 385, 393, 426, 644, 665, 747, 1092
MboI GATC 9 cut(s) 134, 296, 383, 391, 424, 642, 663, 745, 1090
MboII GAAGA 4 cut(s) 455, 671, 841, 971
MfeI CAATTG 1 cut(s) 354
MflI RGATCY 3 cut(s) 296, 424, 663
MluCI AATT 6 cut(s) 115, 179, 354, 528, 811, 964
Mly113I GGCGCC 1 cut(s) 259
MlyI GAGTC 4 cut(s) 62, 183, 236, 641
MmeI TCCRAC 1 cut(s) 566
Mph1103I ATGCAT 1 cut(s) 467
MreI CGCCGGCG 1 cut(s) 255
MroNI GCCGGC 1 cut(s) 255
MseI TTAA 3 cut(s) 149, 473, 638
MslI CAYNNNNRTG 1 cut(s) 62
MspA1I CMGCKG 4 cut(s) 233, 743, 886, 1130
MspI CCGG 4 cut(s) 30, 128, 168, 256
MspR9I CCNGG 2 cut(s) 345, 1073
MunI CAATTG 1 cut(s) 354
MvaI CCWGG 2 cut(s) 345, 1073
MvnI CGCG 3 cut(s) 51, 247, 898
MwoI GCNNNNNNNGC 3 cut(s) 314, 883, 895
NaeI GCCGGC 1 cut(s) 257
NarI GGCGCC 1 cut(s) 259
NcoI CCATGG 1 cut(s) 431
NdeII GATC 9 cut(s) 134, 296, 383, 391, 424, 642, 663, 745, 1090
NgoMIV GCCGGC 1 cut(s) 255
NlaIII CATG 5 cut(s) 435, 469, 550, 752, 775
NlaIV GGNNCC 7 cut(s) 28, 260, 327, 426, 738, 777, 1057
NsbI TGCGCA 1 cut(s) 536
NsiI ATGCAT 1 cut(s) 467
OliI CACNNNNGTG 1 cut(s) 62
PagI TCATGA 1 cut(s) 748
PalAI GGCGCGCC 2 cut(s) 49, 245
PauI GCGCGC 2 cut(s) 49, 245
PcsI WCGNNNNNNNCGW 2 cut(s) 30, 259
PdiI GCCGGC 1 cut(s) 257
PfeI GAWTC 5 cut(s) 350, 506, 569, 589, 752
Pfl23II CGTACG 2 cut(s) 21, 263
PkrI GCNGC 4 cut(s) 77, 222, 837, 888
PleI GAGTC 4 cut(s) 62, 183, 235, 641
PluTI GGCGCC 1 cut(s) 262
PpsI GAGTC 4 cut(s) 62, 183, 235, 641
PsiI TTATAA 1 cut(s) 1013
Psp6I CCWGG 2 cut(s) 343, 1071
PspEI GGTNACC 1 cut(s) 929
PspGI CCWGG 2 cut(s) 343, 1071
PspLI CGTACG 2 cut(s) 21, 263
PspN4I GGNNCC 7 cut(s) 28, 260, 327, 426, 738, 777, 1057
PspPI GGNCC 1 cut(s) 325
PsuI RGATCY 3 cut(s) 296, 424, 663
PteI GCGCGC 2 cut(s) 49, 245
PvuII CAGCTG 2 cut(s) 743, 886
RsaI GTAC 4 cut(s) 23, 265, 541, 722
RsaNI GTAC 4 cut(s) 22, 264, 540, 721
RseI CAYNNNNRTG 1 cut(s) 62
SaqAI TTAA 3 cut(s) 149, 473, 638
SatI GCNGC 4 cut(s) 76, 221, 836, 887
Sau3AI GATC 9 cut(s) 134, 296, 383, 391, 424, 642, 663, 745, 1090
Sau96I GGNCC 1 cut(s) 325
ScaI AGTACT 1 cut(s) 541
SchI GAGTC 4 cut(s) 62, 183, 236, 641
ScrFI CCNGG 2 cut(s) 345, 1073
SfaNI GCATC 1 cut(s) 46
SfcI CTRYAG 1 cut(s) 597
SfoI GGCGCC 1 cut(s) 260
SgrAI CRCCGGYG 2 cut(s) 29, 255
SgsI GGCGCGCC 2 cut(s) 49, 245
SinI GGWCC 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 62
SmlI CTYRAG 1 cut(s) 866
SmoI CTYRAG 1 cut(s) 866
Sse9I AATT 6 cut(s) 115, 179, 354, 528, 811, 964
SsiI CCGC 4 cut(s) 186, 231, 288, 1130
SspDI GGCGCC 1 cut(s) 258
SspMI CTAG 6 cut(s) 62, 105, 164, 381, 566, 816
StyD4I CCNGG 2 cut(s) 343, 1071
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 6 cut(s) 21, 268, 479, 544, 584, 1079
TaiI ACGT 1 cut(s) 975
TaqI TCGA 4 cut(s) 645, 657, 1081, 1118
TasI AATT 6 cut(s) 115, 179, 354, 528, 811, 964
TatI WGTACW 1 cut(s) 539
TfiI GAWTC 5 cut(s) 350, 506, 569, 589, 752
Tru1I TTAA 3 cut(s) 149, 473, 638
Tru9I TTAA 3 cut(s) 149, 473, 638
TscAI CASTG 1 cut(s) 1072
TseI GCWGC 4 cut(s) 75, 220, 835, 886
TspDTI ATGAA 2 cut(s) 384, 776
TspGWI ACGGA 1 cut(s) 291
TspRI CASTG 1 cut(s) 1072
VpaK11BI GGWCC 1 cut(s) 325
XapI RAATTY 3 cut(s) 115, 179, 528
XbaI TCTAGA 3 cut(s) 380, 565, 815
XmiI GTMKAC 2 cut(s) 600, 1025
XspI CTAG 6 cut(s) 62, 105, 164, 381, 566, 816
ZrmI AGTACT 1 cut(s) 541
Zsp2I ATGCAT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.