FvH4_6g10331

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Forward (+)
6164564 .. 6166286
1723 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10331.t1

Sequence Viewer

Length: 576 bp
ATGTCGCAGGACTGGCCAACGACAAGTTTTCCGGCCGGATTGAAGCTCTGGACGGAAAACACCATGATTGATCAAGGTTGGCCGGAAAACTTGTCGCCGGTCAGTCCTGGAAAGAGAGAAGCCGTCCTGGAAGCCTGTGCTGTCGTCCGGGAAGGAGAGAAGCCGTCGCCGAGGCCGGATATGGAGCGCACGTCCGCAAGTGCGCACGGAGCTCCGTTCGCCACCGTCCGGCGCCGACGACAACGCGCCTCCACCCCAGCAGTGTCCCCGATCATTTTCTCTCCCCGGCGAGTCCGCCGAAATCCAGTTTTCCGGCGAGATCACCAAAAAATTCAAATAAAGTCGATATATACGGAAACTGGAATTATCTCGCCGGAAACTGAAATTCGGCGGACTCGCCGGGGAGGGAAAGTGATCGGAAACGCTGCTGGAGTTCGCTGGGGGGTCGGCGCCCTATCGTCGGCGCCGGACGGTGGCGAACGGAGCTCCAAGATGAGTGCAGTGTTTGATGGCAGCTGCTTGCTTTACCTACTTCCATACTTGTCTCCTCCTTTTCCTGTGAACCCACCTCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.05

Weight (kDa)

10.47

Isoelectric Point (pI)

88.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 204
AccB1I GGYRCC 3 cut(s) 231, 449, 463
AccII CGCG 1 cut(s) 246
AciI CCGC 3 cut(s) 195, 295, 391
AcoI YGGCCR 3 cut(s) 14, 33, 80
AcsI RAATTY 2 cut(s) 330, 384
AcyI GRCGYC 3 cut(s) 232, 450, 464
AfiI CCNNNNNNNGG 3 cut(s) 228, 460, 473
AgsI TTSAA 2 cut(s) 43, 335
AjiI CACGTC 1 cut(s) 192
AjnI CCWGG 2 cut(s) 106, 126
AluBI AGCT 4 cut(s) 46, 212, 486, 516
AluI AGCT 4 cut(s) 46, 212, 486, 516
Alw21I GWGCWC 2 cut(s) 214, 488
Alw26I GTCTC 1 cut(s) 549
AoxI GGCC 4 cut(s) 14, 33, 80, 173
ApeKI GCWGC 3 cut(s) 425, 513, 516
ApoI RAATTY 2 cut(s) 330, 384
AspLEI GCGC 6 cut(s) 189, 205, 234, 248, 452, 466
AsuC2I CCSGG 3 cut(s) 149, 286, 401
AsuHPI GGTGA 1 cut(s) 314
BalI TGGCCA 1 cut(s) 16
BanI GGYRCC 3 cut(s) 231, 449, 463
BanII GRGCYC 2 cut(s) 214, 488
Bbv12I GWGCWC 2 cut(s) 214, 488
BbvI GCAGC 3 cut(s) 412, 503, 525
BccI CCATC 1 cut(s) 503
BceAI ACGGC 2 cut(s) 107, 148
BciT130I CCWGG 2 cut(s) 108, 128
BclI TGATCA 1 cut(s) 70
BcnI CCSGG 3 cut(s) 149, 286, 401
BcoDI GTCTC 1 cut(s) 549
BfoI RGCGCY 3 cut(s) 235, 453, 467
BisI GCNGC 3 cut(s) 426, 514, 517
BlsI GCNGC 3 cut(s) 427, 515, 518
Bme1390I CCNGG 5 cut(s) 108, 128, 149, 286, 401
BmgBI CACGTC 1 cut(s) 192
BmiI GGNNCC 3 cut(s) 233, 451, 465
BmrFI CCNGG 5 cut(s) 108, 128, 149, 286, 401
BpmI CTGGAG 1 cut(s) 450
BpuMI CCSGG 3 cut(s) 149, 286, 401
BsaHI GRCGYC 3 cut(s) 232, 450, 464
BsaJI CCNNGG 3 cut(s) 170, 284, 400
BsaXI ACNNNNNCTCC 4 cut(s) 176, 206, 396, 426
Bsc4I CCNNNNNNNGG 3 cut(s) 228, 460, 473
Bse118I RCCGGY 1 cut(s) 97
Bse1I ACTGG 3 cut(s) 17, 305, 364
BseBI CCWGG 2 cut(s) 108, 128
BseDI CCNNGG 3 cut(s) 170, 284, 400
BseLI CCNNNNNNNGG 3 cut(s) 228, 460, 473
BseNI ACTGG 3 cut(s) 17, 305, 364
BseRI GAGGAG 1 cut(s) 537
BseX3I CGGCCG 1 cut(s) 33
BseXI GCAGC 3 cut(s) 412, 503, 525
BseYI CCCAGC 2 cut(s) 256, 438
BsgI GTGCAG 1 cut(s) 519
Bsh1236I CGCG 1 cut(s) 246
Bsh1285I CGRYCG 1 cut(s) 36
BshFI GGCC 4 cut(s) 16, 35, 82, 175
BshNI GGYRCC 3 cut(s) 231, 449, 463
BsiEI CGRYCG 1 cut(s) 36
BsiHKAI GWGCWC 2 cut(s) 214, 488
BslFI GGGAC 1 cut(s) 250
BslI CCNNNNNNNGG 3 cut(s) 228, 460, 473
BsmAI GTCTC 1 cut(s) 549
BsmFI GGGAC 1 cut(s) 250
BsnI GGCC 4 cut(s) 16, 35, 82, 175
Bsp1286I GDGCHC 2 cut(s) 214, 488
Bsp143I GATC 4 cut(s) 70, 270, 319, 414
BspACI CCGC 3 cut(s) 195, 295, 391
BspANI GGCC 4 cut(s) 16, 35, 82, 175
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 3 cut(s) 233, 451, 465
BspT107I GGYRCC 3 cut(s) 231, 449, 463
BsrFI RCCGGY 1 cut(s) 97
BsrI ACTGG 3 cut(s) 17, 305, 364
BssAI RCCGGY 1 cut(s) 97
BssECI CCNNGG 3 cut(s) 170, 284, 400
BssMI GATC 4 cut(s) 70, 270, 319, 414
BssNI GRCGYC 3 cut(s) 232, 450, 464
Bst2UI CCWGG 2 cut(s) 108, 128
Bst4CI ACNGT 2 cut(s) 226, 473
BstACI GRCGYC 3 cut(s) 232, 450, 464
BstC8I GCNNGC 1 cut(s) 521
BstFNI CGCG 1 cut(s) 246
BstH2I RGCGCY 3 cut(s) 235, 453, 467
BstHHI GCGC 6 cut(s) 189, 205, 234, 248, 452, 466
BstKTI GATC 4 cut(s) 73, 273, 322, 417
BstMAI GTCTC 1 cut(s) 549
BstMBI GATC 4 cut(s) 70, 270, 319, 414
BstMCI CGRYCG 1 cut(s) 36
BstMWI GCNNNNNNNGC 4 cut(s) 13, 209, 218, 483
BstNI CCWGG 2 cut(s) 108, 128
BstSCI CCNGG 5 cut(s) 106, 126, 147, 284, 399
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 3 cut(s) 412, 503, 525
BstZI CGGCCG 1 cut(s) 33
BsuRI GGCC 4 cut(s) 16, 35, 82, 175
BtrI CACGTC 1 cut(s) 192
BtsI GCAGTG 2 cut(s) 267, 507
BtsIMutI CAGTG 2 cut(s) 267, 507
Cac8I GCNNGC 1 cut(s) 521
CfoI GCGC 6 cut(s) 189, 205, 234, 248, 452, 466
Cfr10I RCCGGY 1 cut(s) 97
CviAII CATG 1 cut(s) 64
DinI GGCGCC 3 cut(s) 233, 451, 465
DpnI GATC 4 cut(s) 72, 272, 321, 416
DpnII GATC 4 cut(s) 70, 270, 319, 414
EaeI YGGCCR 3 cut(s) 14, 33, 80
EagI CGGCCG 1 cut(s) 33
EciI GGCGGA 2 cut(s) 284, 406
Ecl136II GAGCTC 2 cut(s) 212, 486
EclXI CGGCCG 1 cut(s) 33
Eco24I GRGCYC 2 cut(s) 214, 488
Eco52I CGGCCG 1 cut(s) 33
Eco53kI GAGCTC 2 cut(s) 212, 486
EcoICRI GAGCTC 2 cut(s) 212, 486
EcoRII CCWGG 2 cut(s) 106, 126
EcoT38I GRGCYC 2 cut(s) 214, 488
EgeI GGCGCC 3 cut(s) 233, 451, 465
EheI GGCGCC 3 cut(s) 233, 451, 465
FaeI CATG 1 cut(s) 67
FaiI YATR 5 cut(s) 65, 182, 349, 351, 538
FaqI GGGAC 1 cut(s) 250
FatI CATG 1 cut(s) 63
FbaI TGATCA 1 cut(s) 70
Fnu4HI GCNGC 3 cut(s) 426, 514, 517
FriOI GRGCYC 2 cut(s) 214, 488
Fsp4HI GCNGC 3 cut(s) 426, 514, 517
FspAI RTGCGCAY 1 cut(s) 204
FspI TGCGCA 1 cut(s) 204
GlaI GCGC 6 cut(s) 188, 204, 233, 247, 451, 465
GluI GCNGC 3 cut(s) 426, 514, 517
GsaI CCCAGC 2 cut(s) 260, 442
GsuI CTGGAG 1 cut(s) 450
HaeII RGCGCY 3 cut(s) 235, 453, 467
HaeIII GGCC 4 cut(s) 16, 35, 82, 175
HhaI GCGC 6 cut(s) 189, 205, 234, 248, 452, 466
Hin1I GRCGYC 3 cut(s) 232, 450, 464
Hin1II CATG 1 cut(s) 67
Hin6I GCGC 6 cut(s) 187, 203, 232, 246, 450, 464
HinP1I GCGC 6 cut(s) 187, 203, 232, 246, 450, 464
HinfI GANTC 2 cut(s) 291, 394
HphI GGTGA 1 cut(s) 314
Hpy166II GTNNAC 1 cut(s) 562
Hpy188I TCNGA 1 cut(s) 419
Hpy188III TCNNGA 1 cut(s) 49
Hpy8I GTNNAC 1 cut(s) 562
Hpy99I CGWCG 3 cut(s) 169, 240, 463
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 2 cut(s) 226, 473
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 1 cut(s) 500
HpyF10VI GCNNNNNNNGC 4 cut(s) 13, 209, 218, 483
HpySE526I ACGT 1 cut(s) 191
Hsp92I GRCGYC 3 cut(s) 232, 450, 464
Hsp92II CATG 1 cut(s) 67
HspAI GCGC 6 cut(s) 187, 203, 232, 246, 450, 464
KasI GGCGCC 3 cut(s) 231, 449, 463
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 4 cut(s) 70, 270, 319, 414
LmnI GCTCC 5 cut(s) 184, 209, 217, 483, 491
Lsp1109I GCAGC 3 cut(s) 412, 503, 525
MaeII ACGT 1 cut(s) 191
MalI GATC 4 cut(s) 72, 272, 321, 416
MboI GATC 4 cut(s) 70, 270, 319, 414
MhlI GDGCHC 2 cut(s) 214, 488
MlsI TGGCCA 1 cut(s) 16
MluCI AATT 3 cut(s) 330, 363, 384
MluNI TGGCCA 1 cut(s) 16
Mly113I GGCGCC 3 cut(s) 232, 450, 464
MlyI GAGTC 2 cut(s) 300, 388
MnlI CCTC 4 cut(s) 165, 259, 398, 558
Mox20I TGGCCA 1 cut(s) 16
MscI TGGCCA 1 cut(s) 16
Msp20I TGGCCA 1 cut(s) 16
MspA1I CMGCKG 1 cut(s) 516
MspR9I CCNGG 5 cut(s) 108, 128, 149, 286, 401
MvaI CCWGG 2 cut(s) 108, 128
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 4 cut(s) 13, 209, 218, 483
NarI GGCGCC 3 cut(s) 232, 450, 464
NciI CCSGG 3 cut(s) 149, 286, 401
NdeII GATC 4 cut(s) 70, 270, 319, 414
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 3 cut(s) 233, 451, 465
NmeAIII GCCGAG 1 cut(s) 195
NsbI TGCGCA 1 cut(s) 204
PfoI TCCNGGA 3 cut(s) 106, 126, 147
PkrI GCNGC 3 cut(s) 427, 515, 518
PleI GAGTC 2 cut(s) 299, 388
PluTI GGCGCC 3 cut(s) 235, 453, 467
PpsI GAGTC 2 cut(s) 299, 388
Psp124BI GAGCTC 2 cut(s) 214, 488
Psp6I CCWGG 2 cut(s) 106, 126
PspFI CCCAGC 2 cut(s) 256, 438
PspGI CCWGG 2 cut(s) 106, 126
PspN4I GGNNCC 3 cut(s) 233, 451, 465
PvuII CAGCTG 1 cut(s) 516
SacI GAGCTC 2 cut(s) 214, 488
SatI GCNGC 3 cut(s) 426, 514, 517
Sau3AI GATC 4 cut(s) 70, 270, 319, 414
SchI GAGTC 2 cut(s) 300, 388
ScrFI CCNGG 5 cut(s) 108, 128, 149, 286, 401
SduI GDGCHC 2 cut(s) 214, 488
SetI ASST 8 cut(s) 48, 79, 194, 214, 488, 518, 531, 571
SfoI GGCGCC 3 cut(s) 233, 451, 465
Sse9I AATT 3 cut(s) 330, 363, 384
SsiI CCGC 3 cut(s) 195, 295, 391
SspDI GGCGCC 3 cut(s) 231, 449, 463
SstI GAGCTC 2 cut(s) 214, 488
StyD4I CCNGG 5 cut(s) 106, 126, 147, 284, 399
TaaI ACNGT 2 cut(s) 226, 473
TaiI ACGT 1 cut(s) 194
TaqI TCGA 1 cut(s) 344
TasI AATT 3 cut(s) 330, 363, 384
TscAI CASTG 2 cut(s) 267, 507
TseI GCWGC 3 cut(s) 425, 513, 516
TspGWI ACGGA 5 cut(s) 68, 204, 222, 368, 496
TspRI CASTG 2 cut(s) 267, 507
XapI RAATTY 2 cut(s) 330, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.