Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000118

Physical Location & Seq

Genomic Coordinates Reverse (-)

27344677 .. 27345379

Gene Structure 703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g34680.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTCCTCACTGAGCTTGTCGCGCTCTACTTCTCCGCCGGAGAGGACGACCGCTGGCTCAAATTCTCCTCCAATCTCTCGTCCAAGCCACGCAGCCCGATCCTGGCAGCGGAGGAGTCGGTCTTCGCTCTCTGCGACGTCGGCTCAGCCGTGGCGGAGCCAGTGGAAGCTCTTCGCCTGCACCATTTCGAAGCAAGCTGCGGAGCTCGCAGGCATGGACGAGGCTGGAGAAGTCGGAGTGGGGGGACATGTTTGATATTTATGGCTGAAACTAGGAGCAAATATATATCTTGTGTTTTGATCGAGAAGTCGGGATCAGAGGCAGACGTTCGCACGCCCTTAAAGTGTGGACGTCCCTCCGTTCTCTACCGTACGGTTTCGACAACGGCGCGCCTCCACCCTAGCGGTCTCCAACAGCGTCCCCGATCACTTTTTCTCCCTGGCGAGTCCGCCGAATTTCAGTTTTCCGACGAGATCACCCAAAACTTCGATCTCGTCGGAAAACTGAAATTCGACCGACTCGCCGGGAAGAGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0031146 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_2

Protein Analysis

180

Amino Acids

19.85

Weight (kDa)

9.24

Isoelectric Point (pI)

57.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica	Prupe.1G448800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata	RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora	Rmu_co8096726.1_g000001
rosa_roxburghii	Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa	Rorug02G0236500
rosa_samantha	Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	141, 355
AccII	CGCG	2 cut(s)	23, 391
AciI	CCGC	7 cut(s)	36, 52, 110, 155, 201, 405, 450
AclWI	GGATC	2 cut(s)	94, 322
AcsI	RAATTY	3 cut(s)	62, 455, 509
AcyI	GRCGYC	2 cut(s)	138, 352
AfaI	GTAC	1 cut(s)	373
AfiI	CCNNNNNNNGG	2 cut(s)	103, 109
AflIII	ACRYGT	1 cut(s)	248
AjnI	CCWGG	2 cut(s)	102, 439
AluBI	AGCT	4 cut(s)	16, 170, 198, 206
AluI	AGCT	4 cut(s)	16, 170, 198, 206
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	1 cut(s)	413
AlwI	GGATC	2 cut(s)	94, 322
ApeKI	GCWGC	3 cut(s)	93, 107, 198
ApoI	RAATTY	3 cut(s)	62, 455, 509
AscI	GGCGCGCC	1 cut(s)	389
Asp700I	GAANNNNTTC	1 cut(s)	171
AspLEI	GCGC	3 cut(s)	25, 391, 393
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	526
AsuHPI	GGTGA	1 cut(s)	469
AsuII	TTCGAA	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	208
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	208
BbvI	GCAGC	3 cut(s)	105, 119, 185
BceAI	ACGGC	2 cut(s)	134, 402
BciT130I	CCWGG	2 cut(s)	104, 441
BcnI	CCSGG	1 cut(s)	526
BcoDI	GTCTC	1 cut(s)	413
BfaI	CTAG	2 cut(s)	273, 402
BisI	GCNGC	3 cut(s)	94, 108, 199
BlpI	GCTNAGC	1 cut(s)	145
BlsI	GCNGC	3 cut(s)	95, 109, 200
Bme1390I	CCNGG	3 cut(s)	104, 441, 526
Bme18I	GGWCC	1 cut(s)	4
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	3 cut(s)	104, 441, 526
BpiI	GAAGAC	1 cut(s)	115
BpmI	CTGGAG	1 cut(s)	247
Bpu1102I	GCTNAGC	1 cut(s)	145
Bpu14I	TTCGAA	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	526
BsaHI	GRCGYC	2 cut(s)	138, 352
BsaI	GGTCTC	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	150, 439
BsaXI	ACNNNNNCTCC	2 cut(s)	420, 450
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 109
Bse1I	ACTGG	1 cut(s)	161
BseBI	CCWGG	2 cut(s)	104, 441
BseDI	CCNNGG	2 cut(s)	150, 439
BseLI	CCNNNNNNNGG	2 cut(s)	103, 109
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	161
BsePI	GCGCGC	1 cut(s)	389
BseRI	GAGGAG	2 cut(s)	58, 128
BseXI	GCAGC	3 cut(s)	105, 119, 185
BsgI	GTGCAG	1 cut(s)	164
Bsh1236I	CGCG	2 cut(s)	23, 391
Bsh1285I	CGRYCG	2 cut(s)	52, 517
BsiEI	CGRYCG	2 cut(s)	52, 517
BsiHKAI	GWGCWC	1 cut(s)	208
BsiSI	CCGG	2 cut(s)	39, 525
BsiWI	CGTACG	1 cut(s)	371
BslFI	GGGAC	3 cut(s)	259, 339, 405
BslI	CCNNNNNNNGG	2 cut(s)	103, 109
BsmAI	GTCTC	1 cut(s)	413
BsmFI	GGGAC	3 cut(s)	259, 339, 405
Bso31I	GGTCTC	1 cut(s)	413
Bsp119I	TTCGAA	1 cut(s)	189
Bsp1286I	GDGCHC	1 cut(s)	208
Bsp143I	GATC	6 cut(s)	99, 300, 314, 425, 474, 490
Bsp1720I	GCTNAGC	1 cut(s)	145
BspACI	CCGC	7 cut(s)	36, 52, 110, 155, 201, 405, 450
BspCNI	CTCAG	2 cut(s)	4, 158
BspFNI	CGCG	2 cut(s)	23, 391
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	2 cut(s)	94, 322
BspQI	GCTCTTC	1 cut(s)	177
BspT104I	TTCGAA	1 cut(s)	189
BspTNI	GGTCTC	1 cut(s)	413
BsrI	ACTGG	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	150, 439
BssHII	GCGCGC	1 cut(s)	389
BssMI	GATC	6 cut(s)	99, 300, 314, 425, 474, 490
BssNI	GRCGYC	2 cut(s)	138, 352
Bst2UI	CCWGG	2 cut(s)	104, 441
Bst4CI	ACNGT	2 cut(s)	371, 376
Bst6I	CTCTTC	2 cut(s)	177, 524
BstACI	GRCGYC	2 cut(s)	138, 352
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	7 cut(s)	56, 179, 196, 208, 212, 335, 391
BstDEI	CTNAG	2 cut(s)	12, 145
BstDSI	CCRYGG	1 cut(s)	150
BstFNI	CGCG	2 cut(s)	23, 391
BstHHI	GCGC	3 cut(s)	25, 391, 393
BstKTI	GATC	6 cut(s)	102, 303, 317, 428, 477, 493
BstMAI	GTCTC	1 cut(s)	413
BstMBI	GATC	6 cut(s)	99, 300, 314, 425, 474, 490
BstMCI	CGRYCG	2 cut(s)	52, 517
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 141, 207
BstNI	CCWGG	2 cut(s)	104, 441
BstNSI	RCATGY	1 cut(s)	252
BstSCI	CCNGG	3 cut(s)	102, 439, 524
BstUI	CGCG	2 cut(s)	23, 391
BstV1I	GCAGC	3 cut(s)	105, 119, 185
BstV2I	GAAGAC	1 cut(s)	115
BtgI	CCRYGG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	9, 168
Cac8I	GCNNGC	7 cut(s)	56, 179, 196, 208, 212, 335, 391
CfoI	GCGC	3 cut(s)	25, 391, 393
Cfr13I	GGNCC	1 cut(s)	4
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	372
CviAII	CATG	2 cut(s)	215, 249
CviQI	GTAC	1 cut(s)	372
DdeI	CTNAG	2 cut(s)	12, 145
DpnI	GATC	6 cut(s)	101, 302, 316, 427, 476, 492
DpnII	GATC	6 cut(s)	99, 300, 314, 425, 474, 490
Eam1104I	CTCTTC	2 cut(s)	177, 524
EarI	CTCTTC	2 cut(s)	177, 524
EciI	GGCGGA	3 cut(s)	25, 170, 439
Ecl136II	GAGCTC	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	208
Eco31I	GGTCTC	1 cut(s)	413
Eco47I	GGWCC	1 cut(s)	4
Eco53kI	GAGCTC	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	206
EcoRII	CCWGG	2 cut(s)	102, 439
EcoT38I	GRGCYC	1 cut(s)	208
FaeI	CATG	2 cut(s)	218, 252
FaiI	YATR	5 cut(s)	216, 250, 263, 285, 287
FaqI	GGGAC	3 cut(s)	259, 339, 405
FatI	CATG	2 cut(s)	214, 248
Fnu4HI	GCNGC	3 cut(s)	94, 108, 199
FriOI	GRGCYC	1 cut(s)	208
Fsp4HI	GCNGC	3 cut(s)	94, 108, 199
FspBI	CTAG	2 cut(s)	273, 402
GlaI	GCGC	3 cut(s)	24, 390, 392
GluI	GCNGC	3 cut(s)	94, 108, 199
GsuI	CTGGAG	1 cut(s)	247
HapII	CCGG	2 cut(s)	39, 525
HgaI	GACGC	1 cut(s)	407
HhaI	GCGC	3 cut(s)	25, 391, 393
Hin1I	GRCGYC	2 cut(s)	138, 352
Hin1II	CATG	2 cut(s)	218, 252
Hin6I	GCGC	3 cut(s)	23, 389, 391
HinP1I	GCGC	3 cut(s)	23, 389, 391
HinfI	GANTC	3 cut(s)	116, 446, 519
HpaII	CCGG	2 cut(s)	39, 525
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	4 cut(s)	237, 319, 469, 500
Hpy188III	TCNNGA	2 cut(s)	304, 312
Hpy8I	GTNNAC	1 cut(s)	350
Hpy99I	CGWCG	4 cut(s)	140, 143, 473, 500
HpyCH4III	ACNGT	2 cut(s)	371, 376
HpyCH4IV	ACGT	3 cut(s)	138, 327, 352
HpyCH4V	TGCA	1 cut(s)	181
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 141, 207
HpyF3I	CTNAG	2 cut(s)	12, 145
HpySE526I	ACGT	3 cut(s)	138, 327, 352
Hsp92I	GRCGYC	2 cut(s)	138, 352
Hsp92II	CATG	2 cut(s)	218, 252
HspAI	GCGC	3 cut(s)	23, 389, 391
Kzo9I	GATC	6 cut(s)	99, 300, 314, 425, 474, 490
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	3 cut(s)	157, 203, 276
Lsp1109I	GCAGC	3 cut(s)	105, 119, 185
MaeI	CTAG	2 cut(s)	273, 402
MaeII	ACGT	3 cut(s)	138, 327, 352
MalI	GATC	6 cut(s)	101, 302, 316, 427, 476, 492
MboI	GATC	6 cut(s)	99, 300, 314, 425, 474, 490
MboII	GAAGA	2 cut(s)	115, 164
MhlI	GDGCHC	1 cut(s)	208
MluCI	AATT	3 cut(s)	62, 455, 509
MlyI	GAGTC	3 cut(s)	125, 455, 513
MmeI	TCCRAC	4 cut(s)	215, 436, 478, 492
MnlI	CCTC	8 cut(s)	17, 37, 79, 106, 215, 313, 367, 404
MroXI	GAANNNNTTC	1 cut(s)	171
MseI	TTAA	1 cut(s)	341
MspA1I	CMGCKG	2 cut(s)	54, 110
MspI	CCGG	2 cut(s)	39, 525
MspR9I	CCNGG	3 cut(s)	104, 441, 526
MvaI	CCWGG	2 cut(s)	104, 441
MvnI	CGCG	2 cut(s)	23, 391
MwoI	GCNNNNNNNGC	3 cut(s)	22, 141, 207
NciI	CCSGG	1 cut(s)	526
NdeII	GATC	6 cut(s)	99, 300, 314, 425, 474, 490
NlaIII	CATG	2 cut(s)	218, 252
NlaIV	GGNNCC	1 cut(s)	159
NspI	RCATGY	1 cut(s)	252
NspV	TTCGAA	1 cut(s)	189
PalAI	GGCGCGCC	1 cut(s)	389
PauI	GCGCGC	1 cut(s)	389
PciI	ACATGT	1 cut(s)	248
PciSI	GCTCTTC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	2 cut(s)	132, 147
PdmI	GAANNNNTTC	1 cut(s)	171
Pfl23II	CGTACG	1 cut(s)	371
PkrI	GCNGC	3 cut(s)	95, 109, 200
PleI	GAGTC	3 cut(s)	124, 454, 513
PpsI	GAGTC	3 cut(s)	124, 454, 513
PscI	ACATGT	1 cut(s)	248
Psp124BI	GAGCTC	1 cut(s)	208
Psp6I	CCWGG	2 cut(s)	102, 439
PspGI	CCWGG	2 cut(s)	102, 439
PspLI	CGTACG	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	4
PteI	GCGCGC	1 cut(s)	389
RsaI	GTAC	1 cut(s)	373
RsaNI	GTAC	1 cut(s)	372
SacI	GAGCTC	1 cut(s)	208
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	341
SatI	GCNGC	3 cut(s)	94, 108, 199
Sau3AI	GATC	6 cut(s)	99, 300, 314, 425, 474, 490
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	3 cut(s)	125, 455, 513
ScrFI	CCNGG	3 cut(s)	104, 441, 526
SduI	GDGCHC	1 cut(s)	208
SetI	ASST	7 cut(s)	18, 141, 172, 200, 208, 330, 355
SfuI	TTCGAA	1 cut(s)	189
SgsI	GGCGCGCC	1 cut(s)	389
SinI	GGWCC	1 cut(s)	4
Sse9I	AATT	3 cut(s)	62, 455, 509
SsiI	CCGC	7 cut(s)	36, 52, 110, 155, 201, 405, 450
SspMI	CTAG	2 cut(s)	273, 402
SstI	GAGCTC	1 cut(s)	208
StyD4I	CCNGG	3 cut(s)	102, 439, 524
TaaI	ACNGT	2 cut(s)	371, 376
TaiI	ACGT	3 cut(s)	141, 330, 355
TaqI	TCGA	5 cut(s)	189, 303, 380, 489, 513
TaqII	GACCGA	2 cut(s)	109, 531
TasI	AATT	3 cut(s)	62, 455, 509
Tru1I	TTAA	1 cut(s)	341
Tru9I	TTAA	1 cut(s)	341
TscAI	CASTG	2 cut(s)	16, 168
TseI	GCWGC	3 cut(s)	93, 107, 198
TspGWI	ACGGA	1 cut(s)	349
TspRI	CASTG	2 cut(s)	16, 168
VpaK11BI	GGWCC	1 cut(s)	4
XapI	RAATTY	3 cut(s)	62, 455, 509
XceI	RCATGY	1 cut(s)	252
XmnI	GAANNNNTTC	1 cut(s)	171
XspI	CTAG	2 cut(s)	273, 402
ZraI	GACGTC	2 cut(s)	139, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.