FvH4_3g24791

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Reverse (-)
17897632 .. 17899077
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24791.t1

Sequence Viewer

Length: 363 bp
ATGCAAGACATACCTGAGGGTGATCTGCTTCAATGGAGGCTAGAGAGTAGTAGAGCAGAGAGCACCCTTATAAAGGGCAGCAGATTCGAGAGGGAGGGGACTAGAAATTGTAACTGCCATTGCCACTTTAAAATGTGGTTCTCATGCGGCCCCCACATTGTTGTTCAGTTTCTGGACACGTTTGAGAACTTTTCTCAGGTGTGCGGACTCGCCGGAAAACTGGAATTCGGCGGATTCGCCGGGGATGGAAAGTGGTCGGGGAAGCTGCTGGAGTCCGCTGAGGTGGAGGCGCGCCCTCGCGCGGCGCCGTACGGTGGCGAACGGACGAAAATCCACACCGTAAAACGGTGCGGACGTCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.49

Weight (kDa)

8.26

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 71
AatII GACGTC 1 cut(s) 358
AccB1I GGYRCC 1 cut(s) 304
AccII CGCG 3 cut(s) 292, 300, 302
AciI CCGC 6 cut(s) 147, 204, 231, 276, 302, 351
AcsI RAATTY 1 cut(s) 224
AcyI GRCGYC 2 cut(s) 305, 355
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 4 cut(s) 73, 301, 314, 345
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 1 cut(s) 32
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
Alw21I GWGCWC 1 cut(s) 65
AlwNI CAGNNNCTG 1 cut(s) 172
AoxI GGCC 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 78, 265
ApoI RAATTY 1 cut(s) 224
AscI GGCGCGCC 1 cut(s) 290
AspLEI GCGC 4 cut(s) 292, 294, 302, 307
AspS9I GGNCC 1 cut(s) 149
AsuC2I CCSGG 1 cut(s) 241
AsuHPI GGTGA 1 cut(s) 32
AxyI CCTNAGG 1 cut(s) 15
BanI GGYRCC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 65
BbvCI CCTCAGC 1 cut(s) 279
BbvI GCAGC 2 cut(s) 90, 252
BccI CCATC 1 cut(s) 239
BceAI ACGGC 1 cut(s) 292
BcgI CGANNNNNNTGC 2 cut(s) 67, 101
BcnI CCSGG 1 cut(s) 241
BfaI CTAG 2 cut(s) 41, 102
BfoI RGCGCY 1 cut(s) 308
BisI GCNGC 4 cut(s) 79, 148, 266, 303
BlsI GCNGC 4 cut(s) 80, 149, 267, 304
Bme1390I CCNGG 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 151, 306
BmrFI CCNGG 1 cut(s) 241
BpmI CTGGAG 1 cut(s) 290
Bpu10I CCTNAGC 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 241
BsaHI GRCGYC 2 cut(s) 305, 355
BsaJI CCNNGG 1 cut(s) 240
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 301, 314, 345
Bse1I ACTGG 1 cut(s) 225
Bse21I CCTNAGG 1 cut(s) 15
Bse3DI GCAATG 1 cut(s) 118
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 250
BseLI CCNNNNNNNGG 4 cut(s) 73, 301, 314, 345
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 3 cut(s) 6, 209, 270
BseNI ACTGG 1 cut(s) 225
BsePI GCGCGC 1 cut(s) 290
BseXI GCAGC 2 cut(s) 90, 252
Bsh1236I CGCG 3 cut(s) 292, 300, 302
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 304
BsiHKAI GWGCWC 1 cut(s) 65
BsiSI CCGG 2 cut(s) 213, 240
BsiWI CGTACG 1 cut(s) 309
BslFI GGGAC 1 cut(s) 112
BslI CCNNNNNNNGG 4 cut(s) 73, 301, 314, 345
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 1 cut(s) 150
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 22
BspACI CCGC 6 cut(s) 147, 204, 231, 276, 302, 351
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 3 cut(s) 7, 208, 271
BspFNI CGCG 3 cut(s) 292, 300, 302
BspLI GGNNCC 2 cut(s) 151, 306
BspT107I GGYRCC 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 118
BsrI ACTGG 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 240
BssHII GCGCGC 1 cut(s) 290
BssMI GATC 1 cut(s) 22
BssNI GRCGYC 2 cut(s) 305, 355
Bst4CI ACNGT 3 cut(s) 314, 340, 348
BstACI GRCGYC 2 cut(s) 305, 355
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 3 cut(s) 15, 195, 279
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 250
BstFNI CGCG 3 cut(s) 292, 300, 302
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 4 cut(s) 292, 294, 302, 307
BstKTI GATC 1 cut(s) 25
BstMBI GATC 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 239
BstUI CGCG 3 cut(s) 292, 300, 302
BstV1I GCAGC 2 cut(s) 90, 252
Bsu36I CCTNAGG 1 cut(s) 15
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 250
Cac8I GCNNGC 1 cut(s) 292
CaiI CAGNNNCTG 1 cut(s) 172
CfoI GCGC 4 cut(s) 292, 294, 302, 307
Cfr13I GGNCC 1 cut(s) 149
Csp6I GTAC 1 cut(s) 310
CviAII CATG 1 cut(s) 144
CviJI RGCY 3 cut(s) 40, 150, 265
CviKI_1 RGCY 3 cut(s) 40, 150, 265
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 3 cut(s) 15, 195, 279
DinI GGCGCC 1 cut(s) 306
DpnI GATC 1 cut(s) 24
DpnII GATC 1 cut(s) 22
DraI TTTAAA 1 cut(s) 130
EciI GGCGGA 1 cut(s) 246
Eco81I CCTNAGG 1 cut(s) 15
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoRI GAATTC 1 cut(s) 224
EgeI GGCGCC 1 cut(s) 306
EheI GGCGCC 1 cut(s) 306
FaeI CATG 1 cut(s) 147
FaiI YATR 3 cut(s) 11, 71, 145
FaqI GGGAC 1 cut(s) 112
FatI CATG 1 cut(s) 143
Fnu4HI GCNGC 4 cut(s) 79, 148, 266, 303
FokI GGATG 1 cut(s) 257
Fsp4HI GCNGC 4 cut(s) 79, 148, 266, 303
FspBI CTAG 2 cut(s) 41, 102
GlaI GCGC 4 cut(s) 291, 293, 301, 306
GluI GCNGC 4 cut(s) 79, 148, 266, 303
GsuI CTGGAG 1 cut(s) 290
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 1 cut(s) 150
HapII CCGG 2 cut(s) 213, 240
HhaI GCGC 4 cut(s) 292, 294, 302, 307
Hin1I GRCGYC 2 cut(s) 305, 355
Hin1II CATG 1 cut(s) 147
Hin6I GCGC 4 cut(s) 290, 292, 300, 305
HinP1I GCGC 4 cut(s) 290, 292, 300, 305
HinfI GANTC 4 cut(s) 84, 207, 234, 272
HpaII CCGG 2 cut(s) 213, 240
HphI GGTGA 1 cut(s) 32
Hpy188III TCNNGA 2 cut(s) 88, 173
HpyCH4III ACNGT 3 cut(s) 314, 340, 348
HpyCH4IV ACGT 2 cut(s) 179, 355
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 3 cut(s) 15, 195, 279
HpySE526I ACGT 2 cut(s) 179, 355
Hsp92I GRCGYC 2 cut(s) 305, 355
Hsp92II CATG 1 cut(s) 147
HspAI GCGC 4 cut(s) 290, 292, 300, 305
KasI GGCGCC 1 cut(s) 304
Kzo9I GATC 1 cut(s) 22
LpnPI CCDG 7 cut(s) 27, 158, 182, 206, 226, 253, 254
Lsp1109I GCAGC 2 cut(s) 90, 252
MaeI CTAG 2 cut(s) 41, 102
MaeII ACGT 2 cut(s) 179, 355
MaeIII GTNAC 1 cut(s) 110
MalI GATC 1 cut(s) 24
MboI GATC 1 cut(s) 22
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 2 cut(s) 106, 224
Mly113I GGCGCC 1 cut(s) 305
MlyI GAGTC 2 cut(s) 201, 281
MnlI CCTC 7 cut(s) 10, 30, 84, 88, 274, 280, 306
MseI TTAA 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 278
MspI CCGG 2 cut(s) 213, 240
MspR9I CCNGG 1 cut(s) 241
MteI GCGCNGCGC 1 cut(s) 303
MvnI CGCG 3 cut(s) 292, 300, 302
NarI GGCGCC 1 cut(s) 305
NciI CCSGG 1 cut(s) 241
NdeII GATC 1 cut(s) 22
NlaIII CATG 1 cut(s) 147
NlaIV GGNNCC 2 cut(s) 151, 306
PalAI GGCGCGCC 1 cut(s) 290
PauI GCGCGC 1 cut(s) 290
PcsI WCGNNNNNNNCGW 1 cut(s) 352
PfeI GAWTC 2 cut(s) 84, 234
Pfl23II CGTACG 1 cut(s) 309
PkrI GCNGC 4 cut(s) 80, 149, 267, 304
PleI GAGTC 2 cut(s) 201, 280
PluTI GGCGCC 1 cut(s) 308
PpsI GAGTC 2 cut(s) 201, 280
PsiI TTATAA 1 cut(s) 71
PspLI CGTACG 1 cut(s) 309
PspN4I GGNNCC 2 cut(s) 151, 306
PspPI GGNCC 1 cut(s) 149
PstNI CAGNNNCTG 1 cut(s) 172
PteI GCGCGC 1 cut(s) 290
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SaqAI TTAA 1 cut(s) 129
SatI GCNGC 4 cut(s) 79, 148, 266, 303
Sau3AI GATC 1 cut(s) 22
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 2 cut(s) 201, 281
ScrFI CCNGG 1 cut(s) 241
SduI GDGCHC 1 cut(s) 65
SetI ASST 6 cut(s) 16, 182, 201, 267, 285, 358
SfoI GGCGCC 1 cut(s) 306
SgsI GGCGCGCC 1 cut(s) 290
Sse9I AATT 2 cut(s) 106, 224
SsiI CCGC 6 cut(s) 147, 204, 231, 276, 302, 351
SspDI GGCGCC 1 cut(s) 304
SspMI CTAG 2 cut(s) 41, 102
StyD4I CCNGG 1 cut(s) 239
TaaI ACNGT 3 cut(s) 314, 340, 348
TaiI ACGT 2 cut(s) 182, 358
TaqI TCGA 1 cut(s) 87
TasI AATT 2 cut(s) 106, 224
TauI GCSGC 2 cut(s) 150, 305
TfiI GAWTC 2 cut(s) 84, 234
Tru1I TTAA 1 cut(s) 129
Tru9I TTAA 1 cut(s) 129
TseI GCWGC 2 cut(s) 78, 265
TspGWI ACGGA 2 cut(s) 337, 348
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 1 cut(s) 224
XspI CTAG 2 cut(s) 41, 102
ZraI GACGTC 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.