FvH4_5g00131

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000118
Physical Location & Seq
Forward (+)
76440 .. 79594
3155 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g00131.t1

Sequence Viewer

Length: 525 bp
ATGGCTTTCATCTTCATCGAGGATGCCTCTGGTGTCCGCTCGGGTGGAGGAGCGCCGTCGTCTGCGCCAGACGGTGAAGATTGGAAGGACATCCGCACTTTAAAGGCTGTGCGGACACCCGTTCCTGATCCAGCGGGTCCCTCTCCAATTACTTCTCCAGTTCTCATGGGTCCGATTTGGGTTAAGTCTCTCGCCCCGTCCGGGCTTCTTATCTCGCCGTCGAAAAGTTTTGATTGGATTGTCACTAAGTGTCCCTTGAAAGGGAAGACTTCATTTCCCTTCTGGAAACTACGGATGGCTTCATCTCTTGACTGGTCTAGAATGATCGGTCTGTGGGACACCGACATAACTAGGCAGAAAAAAAAAGAGGGAGGGGAGAAGGACCTTGACGGAAACAACCTTGTTGGAGGGAAGACCCCAGCCATGATTCTTTCCCAAGACCATCGTCCTACATCGGTTTTGGAGGTCGCCGGAATTGACCTCCGGCCGCCGCGGCCGGCGGAGCCGCCGGTTGGGAGATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

175

Amino Acids

18.8

Weight (kDa)

9.33

Isoelectric Point (pI)

56.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 39
AccII CGCG 1 cut(s) 493
AciI CCGC 9 cut(s) 37, 94, 112, 134, 488, 491, 493, 500, 506
AclWI GGATC 1 cut(s) 122
AcoI YGGCCR 2 cut(s) 485, 494
AdeI CACNNNGTG 1 cut(s) 249
AfiI CCNNNNNNNGG 4 cut(s) 201, 260, 261, 512
AgsI TTSAA 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 192
AlwI GGATC 1 cut(s) 122
Ama87I CYCGRG 1 cut(s) 40
AoxI GGCC 2 cut(s) 485, 494
AspLEI GCGC 2 cut(s) 55, 67
AspS9I GGNCC 3 cut(s) 137, 170, 382
AsuC2I CCSGG 1 cut(s) 202
AsuHPI GGTGA 1 cut(s) 86
AvaI CYCGRG 1 cut(s) 40
AvaII GGWCC 3 cut(s) 137, 170, 382
BbsI GAAGAC 2 cut(s) 272, 419
BccI CCATC 2 cut(s) 289, 450
BceAI ACGGC 2 cut(s) 40, 202
BcnI CCSGG 1 cut(s) 202
BcoDI GTCTC 1 cut(s) 192
BfaI CTAG 2 cut(s) 318, 351
BfoI RGCGCY 1 cut(s) 56
BglI GCCNNNNNGGC 1 cut(s) 493
BisI GCNGC 4 cut(s) 488, 491, 494, 506
BlsI GCNGC 4 cut(s) 489, 492, 495, 507
Bme1390I CCNGG 1 cut(s) 202
Bme18I GGWCC 3 cut(s) 137, 170, 382
BmeT110I CYCGRG 1 cut(s) 40
BmgT120I GGNCC 3 cut(s) 137, 170, 382
BmiI GGNNCC 4 cut(s) 138, 139, 171, 504
BmrFI CCNGG 1 cut(s) 202
BmsI GCATC 1 cut(s) 13
BoxI GACNNNNGTC 1 cut(s) 444
BpiI GAAGAC 2 cut(s) 272, 419
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BpmI CTGGAG 1 cut(s) 141
BpuMI CCSGG 1 cut(s) 202
BsaJI CCNNGG 1 cut(s) 491
Bsc4I CCNNNNNNNGG 4 cut(s) 201, 260, 261, 512
Bse118I RCCGGY 2 cut(s) 496, 508
Bse1I ACTGG 2 cut(s) 158, 317
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 3 cut(s) 28, 90, 300
BseLI CCNNNNNNNGG 4 cut(s) 201, 260, 261, 512
BseNI ACTGG 2 cut(s) 158, 317
BseRI GAGGAG 1 cut(s) 63
BseX3I CGGCCG 2 cut(s) 485, 494
BseYI CCCAGC 1 cut(s) 418
Bsh1236I CGCG 1 cut(s) 493
Bsh1285I CGRYCG 2 cut(s) 488, 497
BshFI GGCC 2 cut(s) 487, 496
BsiEI CGRYCG 2 cut(s) 488, 497
BsiHKCI CYCGRG 1 cut(s) 40
BsiSI CCGG 5 cut(s) 201, 471, 484, 497, 509
BslFI GGGAC 3 cut(s) 123, 237, 350
BslI CCNNNNNNNGG 4 cut(s) 201, 260, 261, 512
BsmAI GTCTC 1 cut(s) 192
BsmFI GGGAC 3 cut(s) 123, 237, 350
BsnI GGCC 2 cut(s) 487, 496
BsoBI CYCGRG 1 cut(s) 40
Bsp143I GATC 2 cut(s) 127, 324
BspACI CCGC 9 cut(s) 37, 94, 112, 134, 488, 491, 493, 500, 506
BspANI GGCC 2 cut(s) 487, 496
BspFNI CGCG 1 cut(s) 493
BspLI GGNNCC 4 cut(s) 138, 139, 171, 504
BspPI GGATC 1 cut(s) 122
BsrBI CCGCTC 1 cut(s) 39
BsrFI RCCGGY 2 cut(s) 496, 508
BsrI ACTGG 2 cut(s) 158, 317
BssAI RCCGGY 2 cut(s) 496, 508
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 2 cut(s) 127, 324
Bst4CI ACNGT 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 498
BstDEI CTNAG 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 491
BstF5I GGATG 3 cut(s) 28, 90, 300
BstFNI CGCG 1 cut(s) 493
BstH2I RGCGCY 1 cut(s) 56
BstHHI GCGC 2 cut(s) 55, 67
BstKTI GATC 2 cut(s) 130, 327
BstMAI GTCTC 1 cut(s) 192
BstMBI GATC 2 cut(s) 127, 324
BstMCI CGRYCG 2 cut(s) 488, 497
BstMWI GCNNNNNNNGC 2 cut(s) 493, 502
BstPAI GACNNNNGTC 1 cut(s) 444
BstSCI CCNGG 1 cut(s) 200
BstUI CGCG 1 cut(s) 493
BstV2I GAAGAC 2 cut(s) 272, 419
BstZI CGGCCG 2 cut(s) 485, 494
BsuRI GGCC 2 cut(s) 487, 496
BtgI CCRYGG 1 cut(s) 491
BtsCI GGATG 3 cut(s) 28, 90, 300
Cac8I GCNNGC 1 cut(s) 498
CfoI GCGC 2 cut(s) 55, 67
Cfr10I RCCGGY 2 cut(s) 496, 508
Cfr13I GGNCC 3 cut(s) 137, 170, 382
Cfr42I CCGCGG 1 cut(s) 494
CviAII CATG 2 cut(s) 166, 424
CviJI RGCY 8 cut(s) 5, 107, 205, 299, 422, 487, 496, 505
CviKI_1 RGCY 8 cut(s) 5, 107, 205, 299, 422, 487, 496, 505
DdeI CTNAG 1 cut(s) 246
DpnI GATC 2 cut(s) 129, 326
DpnII GATC 2 cut(s) 127, 324
DraI TTTAAA 1 cut(s) 102
DraIII CACNNNGTG 1 cut(s) 249
EaeI YGGCCR 2 cut(s) 485, 494
EagI CGGCCG 2 cut(s) 485, 494
EciI GGCGGA 1 cut(s) 515
EclXI CGGCCG 2 cut(s) 485, 494
Eco47I GGWCC 3 cut(s) 137, 170, 382
Eco52I CGGCCG 2 cut(s) 485, 494
Eco88I CYCGRG 1 cut(s) 40
EcoO109I RGGNCCY 2 cut(s) 137, 382
FaeI CATG 2 cut(s) 169, 427
FaiI YATR 3 cut(s) 167, 347, 425
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FaqI GGGAC 3 cut(s) 123, 237, 350
FatI CATG 2 cut(s) 165, 423
FauI CCCGC 1 cut(s) 127
Fnu4HI GCNGC 4 cut(s) 488, 491, 494, 506
FokI GGATG 3 cut(s) 35, 77, 307
Fsp4HI GCNGC 4 cut(s) 488, 491, 494, 506
FspBI CTAG 2 cut(s) 318, 351
GlaI GCGC 2 cut(s) 54, 66
GluI GCNGC 4 cut(s) 488, 491, 494, 506
GsaI CCCAGC 1 cut(s) 422
GsuI CTGGAG 1 cut(s) 141
HaeII RGCGCY 1 cut(s) 56
HaeIII GGCC 2 cut(s) 487, 496
HapII CCGG 5 cut(s) 201, 471, 484, 497, 509
HhaI GCGC 2 cut(s) 55, 67
Hin1II CATG 2 cut(s) 169, 427
Hin6I GCGC 2 cut(s) 53, 65
HinP1I GCGC 2 cut(s) 53, 65
HinfI GANTC 1 cut(s) 427
HpaII CCGG 5 cut(s) 201, 471, 484, 497, 509
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 4 cut(s) 125, 283, 308, 318
Hpy99I CGWCG 2 cut(s) 61, 223
HpyAV CCTTC 3 cut(s) 79, 289, 373
HpyCH4III ACNGT 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 2 cut(s) 493, 502
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 2 cut(s) 169, 427
HspAI GCGC 2 cut(s) 53, 65
KflI GGGWCCC 1 cut(s) 137
KroI GCCGGC 1 cut(s) 496
KroNI GCCGGC 1 cut(s) 498
KspI CCGCGG 1 cut(s) 494
Kzo9I GATC 2 cut(s) 127, 324
LmnI GCTCC 2 cut(s) 50, 502
LweI GCATC 1 cut(s) 13
MaeI CTAG 2 cut(s) 318, 351
MaeIII GTNAC 1 cut(s) 241
MalI GATC 2 cut(s) 129, 326
MbiI CCGCTC 1 cut(s) 39
MboI GATC 2 cut(s) 127, 324
MboII GAAGA 4 cut(s) 4, 89, 277, 424
MluCI AATT 2 cut(s) 147, 474
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 9 cut(s) 13, 37, 41, 151, 361, 365, 401, 457, 491
MroNI GCCGGC 1 cut(s) 496
MseI TTAA 3 cut(s) 101, 183, 523
MspA1I CMGCKG 2 cut(s) 134, 493
MspI CCGG 5 cut(s) 201, 471, 484, 497, 509
MspR9I CCNGG 1 cut(s) 202
MvnI CGCG 1 cut(s) 493
MwoI GCNNNNNNNGC 2 cut(s) 493, 502
NaeI GCCGGC 1 cut(s) 498
NciI CCSGG 1 cut(s) 202
NdeII GATC 2 cut(s) 127, 324
NgoMIV GCCGGC 1 cut(s) 496
NlaIII CATG 2 cut(s) 169, 427
NlaIV GGNNCC 4 cut(s) 138, 139, 171, 504
NmuCI GTSAC 1 cut(s) 241
PdiI GCCGGC 1 cut(s) 498
PfeI GAWTC 1 cut(s) 427
PkrI GCNGC 4 cut(s) 489, 492, 495, 507
PpuMI RGGWCCY 2 cut(s) 137, 382
PshAI GACNNNNGTC 1 cut(s) 444
Psp5II RGGWCCY 2 cut(s) 137, 382
PspFI CCCAGC 1 cut(s) 418
PspN4I GGNNCC 4 cut(s) 138, 139, 171, 504
PspPI GGNCC 3 cut(s) 137, 170, 382
PspPPI RGGWCCY 2 cut(s) 137, 382
SacII CCGCGG 1 cut(s) 494
SaqAI TTAA 3 cut(s) 101, 183, 523
SatI GCNGC 4 cut(s) 488, 491, 494, 506
Sau3AI GATC 2 cut(s) 127, 324
Sau96I GGNCC 3 cut(s) 137, 170, 382
ScrFI CCNGG 1 cut(s) 202
SetI ASST 4 cut(s) 387, 402, 468, 483
SfaNI GCATC 1 cut(s) 13
SfiI GGCCNNNNNGGCC 1 cut(s) 493
Sfr303I CCGCGG 1 cut(s) 494
SgrBI CCGCGG 1 cut(s) 494
SinI GGWCC 3 cut(s) 137, 170, 382
Sse9I AATT 2 cut(s) 147, 474
SsiI CCGC 9 cut(s) 37, 94, 112, 134, 488, 491, 493, 500, 506
SspMI CTAG 2 cut(s) 318, 351
StyD4I CCNGG 1 cut(s) 200
TaaI ACNGT 1 cut(s) 74
TaqI TCGA 2 cut(s) 18, 221
TaqII GACCGA 1 cut(s) 317
TasI AATT 2 cut(s) 147, 474
TauI GCSGC 4 cut(s) 490, 493, 496, 508
TfiI GAWTC 1 cut(s) 427
Tru1I TTAA 3 cut(s) 101, 183, 523
Tru9I TTAA 3 cut(s) 101, 183, 523
TseFI GTSAC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 3 cut(s) 4, 261, 291
TspGWI ACGGA 2 cut(s) 307, 405
VpaK11BI GGWCC 3 cut(s) 137, 170, 382
XbaI TCTAGA 1 cut(s) 317
XspI CTAG 2 cut(s) 318, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.