FvH4_6g08591

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Reverse (-)
5099056 .. 5101942
2887 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08591.t1

Sequence Viewer

Length: 402 bp
ATGGCTATTCTGCACTCTGGCAGCGATAGGACATTTCAAAAAGGAGAAGTGATTGGAAGACAAAATGGAATTCTTAGTCACACAGCTGTTATTTCAATAACGGATAGGAAACATGTTCAAAATACTGGAAGTCGAAGTAGTAGAGGGCAGATTGATAGGGGTAATTTTGTGCATTCAAGACTGATGAGAGCAACTGCTTTTCAGCCGGCGAGTCCGCCGAATTCCAGTTTTCCGGCCAGATTGACTTTGTTTGATGTTTTGGGTGATCTGACCGGAAAACTGGAATTCGGCGGACTCGCCGGGGATGGAAAGTGGTCGGAAAAGCTGCTGGAGTCCGCTGGGGTGGAGGCGCGCCCTCACCGGCGCCGTACGGTGGCGAACGGAGGGAAATCAACACCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.33

Weight (kDa)

11.1

Isoelectric Point (pI)

37.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 363
AccII CGCG 1 cut(s) 352
AciI CCGC 3 cut(s) 215, 291, 336
AcoI YGGCCR 1 cut(s) 234
AcsI RAATTY 3 cut(s) 69, 220, 284
AcyI GRCGYC 1 cut(s) 364
AfaI GTAC 1 cut(s) 370
AfiI CCNNNNNNNGG 1 cut(s) 373
AflIII ACRYGT 1 cut(s) 112
AgsI TTSAA 4 cut(s) 38, 96, 119, 177
AluBI AGCT 2 cut(s) 86, 325
AluI AGCT 2 cut(s) 86, 325
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 2 cut(s) 21, 325
ApoI RAATTY 3 cut(s) 69, 220, 284
AscI GGCGCGCC 1 cut(s) 350
AspLEI GCGC 3 cut(s) 352, 354, 366
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 2 cut(s) 275, 350
BanI GGYRCC 1 cut(s) 363
BbsI GAAGAC 1 cut(s) 64
BbvI GCAGC 2 cut(s) 33, 312
BccI CCATC 1 cut(s) 299
BceAI ACGGC 1 cut(s) 351
BcnI CCSGG 1 cut(s) 301
BfoI RGCGCY 1 cut(s) 367
BisI GCNGC 2 cut(s) 22, 326
BlsI GCNGC 2 cut(s) 23, 327
Bme1390I CCNGG 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 365
BmrFI CCNGG 1 cut(s) 301
BpiI GAAGAC 1 cut(s) 64
BpmI CTGGAG 1 cut(s) 350
BpuMI CCSGG 1 cut(s) 301
BsaHI GRCGYC 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 300
BsaWI WCCGGW 1 cut(s) 272
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse118I RCCGGY 2 cut(s) 205, 360
Bse1I ACTGG 3 cut(s) 130, 225, 285
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 373
BseNI ACTGG 3 cut(s) 130, 225, 285
BsePI GCGCGC 1 cut(s) 350
BseXI GCAGC 2 cut(s) 33, 312
BseYI CCCAGC 1 cut(s) 338
Bsh1236I CGCG 1 cut(s) 352
BshFI GGCC 1 cut(s) 236
BshNI GGYRCC 1 cut(s) 363
BsiSI CCGG 5 cut(s) 206, 233, 273, 300, 361
BsiWI CGTACG 1 cut(s) 368
BslI CCNNNNNNNGG 1 cut(s) 373
BsmI GAATGC 1 cut(s) 172
BsnI GGCC 1 cut(s) 236
Bsp143I GATC 1 cut(s) 265
BspACI CCGC 3 cut(s) 215, 291, 336
BspANI GGCC 1 cut(s) 236
BspFNI CGCG 1 cut(s) 352
BspLI GGNNCC 1 cut(s) 365
BspT107I GGYRCC 1 cut(s) 363
BsrFI RCCGGY 2 cut(s) 205, 360
BsrI ACTGG 3 cut(s) 130, 225, 285
BssAI RCCGGY 2 cut(s) 205, 360
BssECI CCNNGG 1 cut(s) 300
BssHII GCGCGC 1 cut(s) 350
BssMI GATC 1 cut(s) 265
BssNI GRCGYC 1 cut(s) 364
Bst4CI ACNGT 2 cut(s) 373, 399
BstACI GRCGYC 1 cut(s) 364
BstC8I GCNNGC 2 cut(s) 207, 352
BstDEI CTNAG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 1 cut(s) 352
BstH2I RGCGCY 1 cut(s) 367
BstHHI GCGC 3 cut(s) 352, 354, 366
BstKTI GATC 1 cut(s) 268
BstMBI GATC 1 cut(s) 265
BstNSI RCATGY 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 299
BstUI CGCG 1 cut(s) 352
BstV1I GCAGC 2 cut(s) 33, 312
BstV2I GAAGAC 1 cut(s) 64
BsuRI GGCC 1 cut(s) 236
BtsCI GGATG 1 cut(s) 310
Cac8I GCNNGC 2 cut(s) 207, 352
CfoI GCGC 3 cut(s) 352, 354, 366
Cfr10I RCCGGY 2 cut(s) 205, 360
Csp6I GTAC 1 cut(s) 369
CviAII CATG 1 cut(s) 113
CviJI RGCY 5 cut(s) 5, 86, 205, 236, 325
CviKI_1 RGCY 5 cut(s) 5, 86, 205, 236, 325
CviQI GTAC 1 cut(s) 369
DdeI CTNAG 1 cut(s) 74
DinI GGCGCC 1 cut(s) 365
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 234
EciI GGCGGA 2 cut(s) 204, 306
EcoRI GAATTC 3 cut(s) 69, 220, 284
EgeI GGCGCC 1 cut(s) 365
EheI GGCGCC 1 cut(s) 365
FaeI CATG 1 cut(s) 116
FaiI YATR 1 cut(s) 114
FatI CATG 1 cut(s) 112
Fnu4HI GCNGC 2 cut(s) 22, 326
FokI GGATG 1 cut(s) 317
Fsp4HI GCNGC 2 cut(s) 22, 326
GlaI GCGC 3 cut(s) 351, 353, 365
GluI GCNGC 2 cut(s) 22, 326
GsaI CCCAGC 1 cut(s) 342
GsuI CTGGAG 1 cut(s) 350
HaeII RGCGCY 1 cut(s) 367
HaeIII GGCC 1 cut(s) 236
HapII CCGG 5 cut(s) 206, 233, 273, 300, 361
HhaI GCGC 3 cut(s) 352, 354, 366
Hin1I GRCGYC 1 cut(s) 364
Hin1II CATG 1 cut(s) 116
Hin6I GCGC 3 cut(s) 350, 352, 364
HinP1I GCGC 3 cut(s) 350, 352, 364
HinfI GANTC 3 cut(s) 211, 294, 332
HpaII CCGG 5 cut(s) 206, 233, 273, 300, 361
HphI GGTGA 2 cut(s) 275, 350
Hpy188I TCNGA 2 cut(s) 270, 319
Hpy188III TCNNGA 1 cut(s) 177
HpyCH4III ACNGT 2 cut(s) 373, 399
HpyCH4V TGCA 2 cut(s) 13, 172
HpyF3I CTNAG 1 cut(s) 74
Hsp92I GRCGYC 1 cut(s) 364
Hsp92II CATG 1 cut(s) 116
HspAI GCGC 3 cut(s) 350, 352, 364
KasI GGCGCC 1 cut(s) 363
KroI GCCGGC 1 cut(s) 205
KroNI GCCGGC 1 cut(s) 207
Kzo9I GATC 1 cut(s) 265
Lsp1109I GCAGC 2 cut(s) 33, 312
MaeIII GTNAC 1 cut(s) 77
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 1 cut(s) 69
MluCI AATT 4 cut(s) 69, 163, 220, 284
Mly113I GGCGCC 1 cut(s) 364
MlyI GAGTC 3 cut(s) 220, 288, 341
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 4 cut(s) 137, 340, 366, 377
MroNI GCCGGC 1 cut(s) 205
MspA1I CMGCKG 2 cut(s) 86, 338
MspI CCGG 5 cut(s) 206, 233, 273, 300, 361
MspR9I CCNGG 1 cut(s) 301
Mva1269I GAATGC 1 cut(s) 172
MvnI CGCG 1 cut(s) 352
NaeI GCCGGC 1 cut(s) 207
NarI GGCGCC 1 cut(s) 364
NciI CCSGG 1 cut(s) 301
NdeII GATC 1 cut(s) 265
NgoMIV GCCGGC 1 cut(s) 205
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 1 cut(s) 365
NmuCI GTSAC 1 cut(s) 77
NspI RCATGY 1 cut(s) 116
PalAI GGCGCGCC 1 cut(s) 350
PauI GCGCGC 1 cut(s) 350
PciI ACATGT 1 cut(s) 112
PctI GAATGC 1 cut(s) 172
PdiI GCCGGC 1 cut(s) 207
Pfl23II CGTACG 1 cut(s) 368
PkrI GCNGC 2 cut(s) 23, 327
PleI GAGTC 3 cut(s) 219, 288, 340
PluTI GGCGCC 1 cut(s) 367
PpsI GAGTC 3 cut(s) 219, 288, 340
PscI ACATGT 1 cut(s) 112
PspFI CCCAGC 1 cut(s) 338
PspLI CGTACG 1 cut(s) 368
PspN4I GGNNCC 1 cut(s) 365
PteI GCGCGC 1 cut(s) 350
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 1 cut(s) 370
RsaNI GTAC 1 cut(s) 369
SatI GCNGC 2 cut(s) 22, 326
Sau3AI GATC 1 cut(s) 265
SchI GAGTC 3 cut(s) 220, 288, 341
ScrFI CCNGG 1 cut(s) 301
SetI ASST 2 cut(s) 88, 327
SfoI GGCGCC 1 cut(s) 365
SgrAI CRCCGGYG 1 cut(s) 360
SgsI GGCGCGCC 1 cut(s) 350
Sse9I AATT 4 cut(s) 69, 163, 220, 284
SsiI CCGC 3 cut(s) 215, 291, 336
SspDI GGCGCC 1 cut(s) 363
StyD4I CCNGG 1 cut(s) 299
TaaI ACNGT 2 cut(s) 373, 399
TaqI TCGA 1 cut(s) 133
TasI AATT 4 cut(s) 69, 163, 220, 284
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 2 cut(s) 21, 325
Tsp45I GTSAC 1 cut(s) 77
TspGWI ACGGA 2 cut(s) 116, 396
XapI RAATTY 3 cut(s) 69, 220, 284
XceI RCATGY 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.