FvH4_6g21651

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Reverse (-)
15204787 .. 15205226
440 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g21651.t1

Sequence Viewer

Length: 258 bp
ATGAGGAAATTCGATCGAAAAGCTGGATCAGGAGCGAACGTCTGCATCGGCCATAAATTGCGGACGTCCGTCCGTTCTCCACCCTCCGGCACCGGCGACGGTGCGCCTCCACCCCAGAAGACTCTAGCAGCGTCCCTGACCACTTTCCGTCCCCGGCGAGAGGGAAAATGGTCGGGGACGCTGCTGGAGTCTTCTGGGGTGGAGGCGCGCCTTCGCCGGCGTCGGAGGGTGGAGAACGGACGGACGTCTGCTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.24

Weight (kDa)

11.88

Isoelectric Point (pI)

73.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 68, 248
AccB1I GGYRCC 1 cut(s) 89
AccII CGCG 1 cut(s) 208
AciI CCGC 1 cut(s) 61
AclWI GGATC 1 cut(s) 34
AcoI YGGCCR 1 cut(s) 49
AcsI RAATTY 1 cut(s) 8
AcyI GRCGYC 3 cut(s) 65, 220, 245
AfiI CCNNNNNNNGG 2 cut(s) 86, 160
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
AlwI GGATC 1 cut(s) 34
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 2 cut(s) 128, 181
ApoI RAATTY 1 cut(s) 8
AscI GGCGCGCC 1 cut(s) 206
AspLEI GCGC 3 cut(s) 106, 208, 210
AsuC2I CCSGG 1 cut(s) 154
BanI GGYRCC 1 cut(s) 89
BbsI GAAGAC 2 cut(s) 125, 183
BbvI GCAGC 2 cut(s) 140, 168
BcnI CCSGG 1 cut(s) 154
BfaI CTAG 1 cut(s) 125
BisI GCNGC 2 cut(s) 129, 182
BlsI GCNGC 2 cut(s) 130, 183
Bme1390I CCNGG 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 91
BmrFI CCNGG 1 cut(s) 154
BmsI GCATC 1 cut(s) 54
BoxI GACNNNNGTC 2 cut(s) 68, 244
BpiI GAAGAC 2 cut(s) 125, 183
BpmI CTGGAG 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 154
BsaHI GRCGYC 3 cut(s) 65, 220, 245
BsaJI CCNNGG 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 24, 54
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 160
Bse118I RCCGGY 2 cut(s) 92, 216
BseDI CCNNGG 1 cut(s) 152
BseLI CCNNNNNNNGG 2 cut(s) 86, 160
BsePI GCGCGC 1 cut(s) 206
BseXI GCAGC 2 cut(s) 140, 168
Bsh1236I CGCG 1 cut(s) 208
Bsh1285I CGRYCG 1 cut(s) 16
BshFI GGCC 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 89
BsiEI CGRYCG 1 cut(s) 16
BsiSI CCGG 4 cut(s) 87, 93, 154, 217
BslFI GGGAC 3 cut(s) 118, 135, 190
BslI CCNNNNNNNGG 2 cut(s) 86, 160
BsmFI GGGAC 3 cut(s) 118, 135, 190
BsnI GGCC 1 cut(s) 51
Bsp143I GATC 2 cut(s) 13, 26
BspACI CCGC 1 cut(s) 61
BspANI GGCC 1 cut(s) 51
BspFNI CGCG 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 91
BspPI GGATC 1 cut(s) 34
BspT107I GGYRCC 1 cut(s) 89
BsrFI RCCGGY 2 cut(s) 92, 216
BssAI RCCGGY 2 cut(s) 92, 216
BssECI CCNNGG 1 cut(s) 152
BssHII GCGCGC 1 cut(s) 206
BssMI GATC 2 cut(s) 13, 26
BssNI GRCGYC 3 cut(s) 65, 220, 245
Bst4CI ACNGT 1 cut(s) 101
BstACI GRCGYC 3 cut(s) 65, 220, 245
BstC8I GCNNGC 2 cut(s) 208, 218
BstFNI CGCG 1 cut(s) 208
BstHHI GCGC 3 cut(s) 106, 208, 210
BstKTI GATC 2 cut(s) 16, 29
BstMBI GATC 2 cut(s) 13, 26
BstMCI CGRYCG 1 cut(s) 16
BstPAI GACNNNNGTC 2 cut(s) 68, 244
BstSCI CCNGG 1 cut(s) 152
BstUI CGCG 1 cut(s) 208
BstV1I GCAGC 2 cut(s) 140, 168
BstV2I GAAGAC 2 cut(s) 125, 183
BsuRI GGCC 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 208, 218
CfoI GCGC 3 cut(s) 106, 208, 210
Cfr10I RCCGGY 2 cut(s) 92, 216
CseI GACGC 3 cut(s) 120, 187, 209
CviJI RGCY 2 cut(s) 23, 51
CviKI_1 RGCY 2 cut(s) 23, 51
DpnI GATC 2 cut(s) 15, 28
DpnII GATC 2 cut(s) 13, 26
EaeI YGGCCR 1 cut(s) 49
FaiI YATR 1 cut(s) 54
FaqI GGGAC 3 cut(s) 118, 135, 190
Fnu4HI GCNGC 2 cut(s) 129, 182
Fsp4HI GCNGC 2 cut(s) 129, 182
FspBI CTAG 1 cut(s) 125
GlaI GCGC 3 cut(s) 105, 207, 209
GluI GCNGC 2 cut(s) 129, 182
GsuI CTGGAG 1 cut(s) 206
HaeIII GGCC 1 cut(s) 51
HapII CCGG 4 cut(s) 87, 93, 154, 217
HgaI GACGC 3 cut(s) 120, 187, 209
HhaI GCGC 3 cut(s) 106, 208, 210
Hin1I GRCGYC 3 cut(s) 65, 220, 245
Hin6I GCGC 3 cut(s) 104, 206, 208
HinP1I GCGC 3 cut(s) 104, 206, 208
HinfI GANTC 2 cut(s) 121, 188
HpaII CCGG 4 cut(s) 87, 93, 154, 217
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 1 cut(s) 30
Hpy99I CGWCG 2 cut(s) 101, 225
HpyAV CCTTC 1 cut(s) 221
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 3 cut(s) 39, 65, 245
HpyCH4V TGCA 1 cut(s) 45
HpySE526I ACGT 3 cut(s) 39, 65, 245
Hsp92I GRCGYC 3 cut(s) 65, 220, 245
HspAI GCGC 3 cut(s) 104, 206, 208
KroI GCCGGC 1 cut(s) 216
KroNI GCCGGC 1 cut(s) 218
Kzo9I GATC 2 cut(s) 13, 26
LmnI GCTCC 1 cut(s) 32
Lsp1109I GCAGC 2 cut(s) 140, 168
LweI GCATC 1 cut(s) 54
MaeI CTAG 1 cut(s) 125
MaeII ACGT 3 cut(s) 39, 65, 245
MalI GATC 2 cut(s) 15, 28
MboI GATC 2 cut(s) 13, 26
MboII GAAGA 2 cut(s) 130, 183
MluCI AATT 2 cut(s) 8, 56
MlyI GAGTC 2 cut(s) 115, 197
MmeI TCCRAC 1 cut(s) 203
MnlI CCTC 5 cut(s) 94, 117, 154, 196, 219
MreI CGCCGGCG 1 cut(s) 216
MroNI GCCGGC 1 cut(s) 216
MseI TTAA 1 cut(s) 256
MspI CCGG 4 cut(s) 87, 93, 154, 217
MspR9I CCNGG 1 cut(s) 154
MvnI CGCG 1 cut(s) 208
NaeI GCCGGC 1 cut(s) 218
NciI CCSGG 1 cut(s) 154
NdeII GATC 2 cut(s) 13, 26
NgoMIV GCCGGC 1 cut(s) 216
NlaIV GGNNCC 1 cut(s) 91
PalAI GGCGCGCC 1 cut(s) 206
PauI GCGCGC 1 cut(s) 206
PdiI GCCGGC 1 cut(s) 218
PkrI GCNGC 2 cut(s) 130, 183
Ple19I CGATCG 1 cut(s) 16
PleI GAGTC 2 cut(s) 115, 196
PpsI GAGTC 2 cut(s) 115, 196
PshAI GACNNNNGTC 2 cut(s) 68, 244
PspN4I GGNNCC 1 cut(s) 91
PteI GCGCGC 1 cut(s) 206
PvuI CGATCG 1 cut(s) 16
SaqAI TTAA 1 cut(s) 256
SatI GCNGC 2 cut(s) 129, 182
Sau3AI GATC 2 cut(s) 13, 26
SchI GAGTC 2 cut(s) 115, 197
ScrFI CCNGG 1 cut(s) 154
SetI ASST 4 cut(s) 25, 42, 68, 248
SfaNI GCATC 1 cut(s) 54
SgrAI CRCCGGYG 2 cut(s) 92, 216
SgsI GGCGCGCC 1 cut(s) 206
Sse9I AATT 2 cut(s) 8, 56
SsiI CCGC 1 cut(s) 61
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 3 cut(s) 42, 68, 248
TaqI TCGA 2 cut(s) 12, 16
TasI AATT 2 cut(s) 8, 56
Tru1I TTAA 1 cut(s) 256
Tru9I TTAA 1 cut(s) 256
TseI GCWGC 2 cut(s) 128, 181
TspGWI ACGGA 5 cut(s) 58, 62, 137, 252, 256
XapI RAATTY 1 cut(s) 8
XspI CTAG 1 cut(s) 125
ZraI GACGTC 2 cut(s) 66, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.