FvH4_3g38772

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Forward (+)
33054909 .. 33059075
4167 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g38772.t1

Sequence Viewer

Length: 315 bp
ATGGACTCGCCGGGGAGGGAAAGTAGTCGGGGACGTTGCTGGAGTGTTCTGGGGTGGAGGCGCACCATCGCCGGTGTCGGAGGGTGGAGAACGGACGGACGTCCGCTTCGTATCCTTCCTGCTGGTGGTGGTGGTTGGACTGAGTCTATAGACGGTCAACATGTGTGGTTTAGGGTGGAAACACTGAGAAATTCTGATGGCGGTGGTCAACCTGAGTTGCATGGAGCTACGGTTTCTAGTGGGCTAGGTTGCTGGATTTGGGCCTCGAGTGGGCTCACTTGTTTTAAGCCTTCCCACTGCTGGGGGCTTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.18

Weight (kDa)

8.97

Isoelectric Point (pI)

60.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 103
AciI CCGC 2 cut(s) 104, 201
AcsI RAATTY 1 cut(s) 190
AcyI GRCGYC 1 cut(s) 100
AfiI CCNNNNNNNGG 4 cut(s) 125, 270, 300, 301
AflIII ACRYGT 1 cut(s) 160
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 1 cut(s) 261
ApoI RAATTY 1 cut(s) 190
ArsI GACNNNNNNTTYG 2 cut(s) 90, 122
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 261
AsuC2I CCSGG 1 cut(s) 12
AvaI CYCGRG 1 cut(s) 265
BanII GRGCYC 1 cut(s) 276
BccI CCATC 2 cut(s) 74, 191
BciVI GTATCC 1 cut(s) 122
BcnI CCSGG 1 cut(s) 12
BfaI CTAG 3 cut(s) 237, 245, 313
BfmI CTRYAG 1 cut(s) 147
BfuI GTATCC 1 cut(s) 122
Bme1390I CCNGG 1 cut(s) 12
BmeT110I CYCGRG 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 12
BoxI GACNNNNGTC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 61
BpuMI CCSGG 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 100
BsaJI CCNNGG 1 cut(s) 11
BsaXI ACNNNNNCTCC 4 cut(s) 7, 37, 216, 246
Bsc4I CCNNNNNNNGG 4 cut(s) 125, 270, 300, 301
Bse118I RCCGGY 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 11
BseLI CCNNNNNNNGG 4 cut(s) 125, 270, 300, 301
BseMII CTCAG 3 cut(s) 132, 176, 204
BseYI CCCAGC 1 cut(s) 300
BshFI GGCC 1 cut(s) 263
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 2 cut(s) 11, 72
BslFI GGGAC 1 cut(s) 45
BslI CCNNNNNNNGG 4 cut(s) 125, 270, 300, 301
BsmFI GGGAC 1 cut(s) 45
BsnI GGCC 1 cut(s) 263
BsoBI CYCGRG 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 276
BspACI CCGC 2 cut(s) 104, 201
BspANI GGCC 1 cut(s) 263
BspCNI CTCAG 3 cut(s) 133, 177, 205
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 1 cut(s) 11
BssNI GRCGYC 1 cut(s) 100
Bst4CI ACNGT 2 cut(s) 155, 232
BstACI GRCGYC 1 cut(s) 100
BstDEI CTNAG 3 cut(s) 141, 185, 213
BstHHI GCGC 1 cut(s) 63
BstNSI RCATGY 1 cut(s) 164
BstPAI GACNNNNGTC 1 cut(s) 99
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 147
BsuI GTATCC 1 cut(s) 122
BsuRI GGCC 1 cut(s) 263
BtgZI GCGATG 1 cut(s) 52
BtsI GCAGTG 1 cut(s) 295
BtsIMutI CAGTG 2 cut(s) 182, 295
CfoI GCGC 1 cut(s) 63
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 261
CspCI CAANNNNNGTGG 2 cut(s) 146, 181
CviAII CATG 2 cut(s) 161, 221
CviJI RGCY 7 cut(s) 227, 244, 263, 274, 289, 307, 312
CviKI_1 RGCY 7 cut(s) 227, 244, 263, 274, 289, 307, 312
DdeI CTNAG 3 cut(s) 141, 185, 213
Eco24I GRGCYC 1 cut(s) 276
Eco88I CYCGRG 1 cut(s) 265
EcoT38I GRGCYC 1 cut(s) 276
FaeI CATG 2 cut(s) 164, 224
FaiI YATR 3 cut(s) 149, 162, 222
FaqI GGGAC 1 cut(s) 45
FatI CATG 2 cut(s) 160, 220
FriOI GRGCYC 1 cut(s) 276
FspBI CTAG 3 cut(s) 237, 245, 313
GlaI GCGC 1 cut(s) 62
GsaI CCCAGC 1 cut(s) 304
GsuI CTGGAG 1 cut(s) 61
HaeIII GGCC 1 cut(s) 263
HapII CCGG 2 cut(s) 11, 72
HhaI GCGC 1 cut(s) 63
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 2 cut(s) 164, 224
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HincII GTYRAC 2 cut(s) 158, 209
HindII GTYRAC 2 cut(s) 158, 209
HinfI GANTC 2 cut(s) 5, 143
HpaII CCGG 2 cut(s) 11, 72
Hpy166II GTNNAC 2 cut(s) 158, 209
Hpy188I TCNGA 2 cut(s) 80, 196
Hpy8I GTNNAC 2 cut(s) 158, 209
HpyAV CCTTC 2 cut(s) 125, 300
HpyCH4III ACNGT 2 cut(s) 155, 232
HpyCH4IV ACGT 2 cut(s) 34, 100
HpyCH4V TGCA 1 cut(s) 220
HpyF3I CTNAG 3 cut(s) 141, 185, 213
HpySE526I ACGT 2 cut(s) 34, 100
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 2 cut(s) 164, 224
HspAI GCGC 1 cut(s) 61
LmnI GCTCC 1 cut(s) 224
LpnPI CCDG 9 cut(s) 24, 25, 35, 85, 108, 132, 225, 238, 286
MaeI CTAG 3 cut(s) 237, 245, 313
MaeII ACGT 2 cut(s) 34, 100
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 1 cut(s) 190
MlyI GAGTC 1 cut(s) 152
MmeI TCCRAC 2 cut(s) 58, 116
MnlI CCTC 4 cut(s) 9, 51, 74, 274
MseI TTAA 1 cut(s) 285
MspI CCGG 2 cut(s) 11, 72
MspR9I CCNGG 1 cut(s) 12
NciI CCSGG 1 cut(s) 12
NlaIII CATG 2 cut(s) 164, 224
NspI RCATGY 1 cut(s) 164
PaeR7I CTCGAG 1 cut(s) 265
PciI ACATGT 1 cut(s) 160
PcsI WCGNNNNNNNCGW 1 cut(s) 106
PflFI GACNNNGTC 1 cut(s) 142
PleI GAGTC 1 cut(s) 151
PpsI GAGTC 1 cut(s) 151
PscI ACATGT 1 cut(s) 160
PshAI GACNNNNGTC 1 cut(s) 99
PspFI CCCAGC 1 cut(s) 300
PspPI GGNCC 1 cut(s) 261
PspXI VCTCGAGB 1 cut(s) 265
PsyI GACNNNGTC 1 cut(s) 142
SaqAI TTAA 1 cut(s) 285
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 1 cut(s) 152
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 1 cut(s) 276
SetI ASST 5 cut(s) 37, 103, 214, 229, 250
SfcI CTRYAG 1 cut(s) 147
Sfr274I CTCGAG 1 cut(s) 265
SgrAI CRCCGGYG 1 cut(s) 71
SlaI CTCGAG 1 cut(s) 265
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
Sse9I AATT 1 cut(s) 190
SsiI CCGC 2 cut(s) 104, 201
SspMI CTAG 3 cut(s) 237, 245, 313
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 155, 232
TaiI ACGT 2 cut(s) 37, 103
TaqI TCGA 1 cut(s) 266
TasI AATT 1 cut(s) 190
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 2 cut(s) 189, 302
TspGWI ACGGA 2 cut(s) 107, 111
TspRI CASTG 2 cut(s) 189, 302
Tth111I GACNNNGTC 1 cut(s) 142
XapI RAATTY 1 cut(s) 190
XceI RCATGY 1 cut(s) 164
XhoI CTCGAG 1 cut(s) 265
XspI CTAG 3 cut(s) 237, 245, 313
ZraI GACGTC 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.