FvH4_6g27031

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Forward (+)
20707395 .. 20711138
3744 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27031.t1

Sequence Viewer

Length: 615 bp
ATGGACTTTGATGAGGGTGGAGAAGAGGTAGGTGATGACGAGGAGGTCAAGACGACGCTCCGGATCAGAGGAGGACGTCCGCACGCCTGTAAAGTGCGGACGTCCCTCCGTTTGCCACCGTACGGCATCGGCGAGGGCGCGCCTCCACCCCAGCAGCGTCCCCGATCACTTTCCCTCCCCGGCGAAATTCAGCGGACTCACCGGGGAGAGAAAGTGATCGGGGACGCTGCTGGAATCTGCTGGGGTAGAGGGGCGCCCTCGCCGGTGCCGTACGGTGGCGAACGGAGGGACGTCCGCACTTTAAGGGCTGGATTATCAGGTGCAGACATCCGCACAGCTCTTAAAGTGCGGACGTCCCTCCTGACGCCACCATACGGCACCGAGGCCTCCAGCAGCGTCCCCGATCACTTTTCCTCCCCGGCGAGTCCGCCGAATTCCAGTTTTCCAGCGAGATTGATTTTGTTTGAAGTTTTGGGTGATCTCGTCGGAAAACTGGAATTCGGCGGACTCACCGGAGAGGGAAAGTGGTCGGGGACTCTGCTGGAGTTGGCTGGGGTGGAGGCGCACTCTCGCCGGCGCCGTACGGTGGTGAATGGAGGGACGTCTGCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

21.71

Weight (kDa)

9.06

Isoelectric Point (pI)

53.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 44
AatII GACGTC 5 cut(s) 79, 104, 294, 356, 605
AccB1I GGYRCC 4 cut(s) 253, 265, 377, 576
AccII CGCG 1 cut(s) 140
AccIII TCCGGA 1 cut(s) 60
AciI CCGC 8 cut(s) 80, 97, 193, 295, 331, 349, 428, 504
AclWI GGATC 1 cut(s) 71
AcsI RAATTY 3 cut(s) 186, 433, 497
AcyI GRCGYC 8 cut(s) 76, 101, 254, 291, 353, 365, 577, 602
AfaI GTAC 3 cut(s) 122, 272, 583
AfiI CCNNNNNNNGG 4 cut(s) 122, 275, 374, 586
AgsI TTSAA 1 cut(s) 467
AluBI AGCT 1 cut(s) 338
AluI AGCT 1 cut(s) 338
AlwI GGATC 1 cut(s) 71
Aor13HI TCCGGA 1 cut(s) 60
AoxI GGCC 1 cut(s) 384
ApeKI GCWGC 3 cut(s) 154, 227, 393
ApoI RAATTY 3 cut(s) 186, 433, 497
AscI GGCGCGCC 1 cut(s) 138
AspLEI GCGC 5 cut(s) 140, 142, 256, 565, 579
AsuC2I CCSGG 3 cut(s) 180, 203, 419
AsuHPI GGTGA 5 cut(s) 44, 191, 488, 502, 601
BanI GGYRCC 4 cut(s) 253, 265, 377, 576
BbvI GCAGC 3 cut(s) 166, 214, 405
BceAI ACGGC 4 cut(s) 139, 253, 391, 564
BcnI CCSGG 3 cut(s) 180, 203, 419
BfoI RGCGCY 2 cut(s) 257, 580
BisI GCNGC 3 cut(s) 155, 228, 394
BlsI GCNGC 3 cut(s) 156, 229, 395
Bme1390I CCNGG 3 cut(s) 180, 203, 419
BmiI GGNNCC 4 cut(s) 255, 267, 379, 578
BmrFI CCNGG 3 cut(s) 180, 203, 419
BmsI GCATC 1 cut(s) 135
BplI GAGNNNNNCTC 2 cut(s) 551, 583
BpmI CTGGAG 2 cut(s) 373, 563
BpuMI CCSGG 3 cut(s) 180, 203, 419
BsaHI GRCGYC 8 cut(s) 76, 101, 254, 291, 353, 365, 577, 602
BsaJI CCNNGG 4 cut(s) 178, 202, 381, 417
BsaWI WCCGGW 2 cut(s) 60, 512
BsaXI ACNNNNNCTCC 8 cut(s) 12, 42, 159, 189, 198, 228, 398, 428
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 275, 374, 586
Bse118I RCCGGY 2 cut(s) 262, 573
Bse1I ACTGG 2 cut(s) 438, 498
BseAI TCCGGA 1 cut(s) 60
BseDI CCNNGG 4 cut(s) 178, 202, 381, 417
BseGI GGATG 1 cut(s) 327
BseLI CCNNNNNNNGG 4 cut(s) 122, 275, 374, 586
BseNI ACTGG 2 cut(s) 438, 498
BsePI GCGCGC 1 cut(s) 138
BseRI GAGGAG 2 cut(s) 56, 84
BseXI GCAGC 3 cut(s) 166, 214, 405
BseYI CCCAGC 3 cut(s) 150, 240, 551
BsgI GTGCAG 1 cut(s) 342
Bsh1236I CGCG 1 cut(s) 140
BshFI GGCC 1 cut(s) 386
BshNI GGYRCC 4 cut(s) 253, 265, 377, 576
BsiSI CCGG 7 cut(s) 61, 180, 202, 263, 419, 513, 574
BsiWI CGTACG 3 cut(s) 120, 270, 581
BslFI GGGAC 7 cut(s) 88, 144, 236, 302, 340, 383, 547
BslI CCNNNNNNNGG 4 cut(s) 122, 275, 374, 586
BsmFI GGGAC 7 cut(s) 88, 144, 236, 302, 340, 383, 547
BsnI GGCC 1 cut(s) 386
Bsp13I TCCGGA 1 cut(s) 60
Bsp143I GATC 5 cut(s) 63, 164, 216, 403, 478
BspACI CCGC 8 cut(s) 80, 97, 193, 295, 331, 349, 428, 504
BspANI GGCC 1 cut(s) 386
BspEI TCCGGA 1 cut(s) 60
BspFNI CGCG 1 cut(s) 140
BspLI GGNNCC 4 cut(s) 255, 267, 379, 578
BspPI GGATC 1 cut(s) 71
BspT107I GGYRCC 4 cut(s) 253, 265, 377, 576
BsrFI RCCGGY 2 cut(s) 262, 573
BsrI ACTGG 2 cut(s) 438, 498
BssAI RCCGGY 2 cut(s) 262, 573
BssECI CCNNGG 4 cut(s) 178, 202, 381, 417
BssHII GCGCGC 1 cut(s) 138
BssMI GATC 5 cut(s) 63, 164, 216, 403, 478
BssNI GRCGYC 8 cut(s) 76, 101, 254, 291, 353, 365, 577, 602
Bst4CI ACNGT 3 cut(s) 120, 275, 586
Bst6I CTCTTC 1 cut(s) 18
BstACI GRCGYC 8 cut(s) 76, 101, 254, 291, 353, 365, 577, 602
BstC8I GCNNGC 3 cut(s) 84, 140, 575
BstF5I GGATG 1 cut(s) 327
BstFNI CGCG 1 cut(s) 140
BstH2I RGCGCY 2 cut(s) 257, 580
BstHHI GCGC 5 cut(s) 140, 142, 256, 565, 579
BstKTI GATC 5 cut(s) 66, 167, 219, 406, 481
BstMBI GATC 5 cut(s) 63, 164, 216, 403, 478
BstSCI CCNGG 3 cut(s) 178, 201, 417
BstUI CGCG 1 cut(s) 140
BstV1I GCAGC 3 cut(s) 166, 214, 405
BsuRI GGCC 1 cut(s) 386
BtsCI GGATG 1 cut(s) 327
Cac8I GCNNGC 3 cut(s) 84, 140, 575
CfoI GCGC 5 cut(s) 140, 142, 256, 565, 579
Cfr10I RCCGGY 2 cut(s) 262, 573
CseI GACGC 5 cut(s) 64, 146, 233, 373, 385
Csp6I GTAC 3 cut(s) 121, 271, 582
CviJI RGCY 4 cut(s) 308, 338, 386, 551
CviKI_1 RGCY 4 cut(s) 308, 338, 386, 551
CviQI GTAC 3 cut(s) 121, 271, 582
DinI GGCGCC 2 cut(s) 255, 578
DpnI GATC 5 cut(s) 65, 166, 218, 405, 480
DpnII GATC 5 cut(s) 63, 164, 216, 403, 478
DrdI GACNNNNNNGTC 1 cut(s) 44
DseDI GACNNNNNNGTC 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
EciI GGCGGA 2 cut(s) 417, 519
Eco147I AGGCCT 1 cut(s) 386
EcoRI GAATTC 2 cut(s) 433, 497
EgeI GGCGCC 2 cut(s) 255, 578
EheI GGCGCC 2 cut(s) 255, 578
FaiI YATR 1 cut(s) 373
FaqI GGGAC 7 cut(s) 88, 144, 236, 302, 340, 383, 547
Fnu4HI GCNGC 3 cut(s) 155, 228, 394
FokI GGATG 1 cut(s) 314
Fsp4HI GCNGC 3 cut(s) 155, 228, 394
GlaI GCGC 5 cut(s) 139, 141, 255, 564, 578
GluI GCNGC 3 cut(s) 155, 228, 394
GsaI CCCAGC 3 cut(s) 154, 244, 555
GsuI CTGGAG 2 cut(s) 373, 563
HaeII RGCGCY 2 cut(s) 257, 580
HaeIII GGCC 1 cut(s) 386
HapII CCGG 7 cut(s) 61, 180, 202, 263, 419, 513, 574
HgaI GACGC 5 cut(s) 64, 146, 233, 373, 385
HhaI GCGC 5 cut(s) 140, 142, 256, 565, 579
Hin1I GRCGYC 8 cut(s) 76, 101, 254, 291, 353, 365, 577, 602
Hin6I GCGC 5 cut(s) 138, 140, 254, 563, 577
HinP1I GCGC 5 cut(s) 138, 140, 254, 563, 577
HinfI GANTC 5 cut(s) 196, 234, 424, 507, 535
HpaII CCGG 7 cut(s) 61, 180, 202, 263, 419, 513, 574
HphI GGTGA 5 cut(s) 44, 191, 488, 502, 601
Hpy188I TCNGA 2 cut(s) 68, 488
Hpy188III TCNNGA 3 cut(s) 49, 61, 361
Hpy99I CGWCG 2 cut(s) 58, 488
HpyCH4III ACNGT 3 cut(s) 120, 275, 586
HpyCH4IV ACGT 5 cut(s) 76, 101, 291, 353, 602
HpyCH4V TGCA 2 cut(s) 323, 608
HpySE526I ACGT 5 cut(s) 76, 101, 291, 353, 602
Hsp92I GRCGYC 8 cut(s) 76, 101, 254, 291, 353, 365, 577, 602
HspAI GCGC 5 cut(s) 138, 140, 254, 563, 577
KasI GGCGCC 2 cut(s) 253, 576
Kpn2I TCCGGA 1 cut(s) 60
KroI GCCGGC 1 cut(s) 573
KroNI GCCGGC 1 cut(s) 575
Kzo9I GATC 5 cut(s) 63, 164, 216, 403, 478
LmnI GCTCC 1 cut(s) 63
Lsp1109I GCAGC 3 cut(s) 166, 214, 405
LweI GCATC 1 cut(s) 135
MaeII ACGT 5 cut(s) 76, 101, 291, 353, 602
MalI GATC 5 cut(s) 65, 166, 218, 405, 480
MboI GATC 5 cut(s) 63, 164, 216, 403, 478
MboII GAAGA 1 cut(s) 35
MluCI AATT 3 cut(s) 186, 433, 497
Mly113I GGCGCC 2 cut(s) 254, 577
MlyI GAGTC 4 cut(s) 190, 433, 501, 529
MmeI TCCRAC 1 cut(s) 466
MreI CGCCGGCG 1 cut(s) 573
MroI TCCGGA 1 cut(s) 60
MroNI GCCGGC 1 cut(s) 573
MseI TTAA 3 cut(s) 302, 342, 613
MspA1I CMGCKG 1 cut(s) 193
MspI CCGG 7 cut(s) 61, 180, 202, 263, 419, 513, 574
MspR9I CCNGG 3 cut(s) 180, 203, 419
MvnI CGCG 1 cut(s) 140
NaeI GCCGGC 1 cut(s) 575
NarI GGCGCC 2 cut(s) 254, 577
NciI CCSGG 3 cut(s) 180, 203, 419
NdeII GATC 5 cut(s) 63, 164, 216, 403, 478
NgoMIV GCCGGC 1 cut(s) 573
NlaIV GGNNCC 4 cut(s) 255, 267, 379, 578
PalAI GGCGCGCC 1 cut(s) 138
PauI GCGCGC 1 cut(s) 138
PceI AGGCCT 1 cut(s) 386
PcsI WCGNNNNNNNCGW 3 cut(s) 129, 266, 577
PdiI GCCGGC 1 cut(s) 575
PfeI GAWTC 1 cut(s) 234
Pfl23II CGTACG 3 cut(s) 120, 270, 581
PkrI GCNGC 3 cut(s) 156, 229, 395
PleI GAGTC 4 cut(s) 190, 432, 501, 529
PluTI GGCGCC 2 cut(s) 257, 580
PpsI GAGTC 4 cut(s) 190, 432, 501, 529
PspFI CCCAGC 3 cut(s) 150, 240, 551
PspLI CGTACG 3 cut(s) 120, 270, 581
PspN4I GGNNCC 4 cut(s) 255, 267, 379, 578
PteI GCGCGC 1 cut(s) 138
RsaI GTAC 3 cut(s) 122, 272, 583
RsaNI GTAC 3 cut(s) 121, 271, 582
SaqAI TTAA 3 cut(s) 302, 342, 613
SatI GCNGC 3 cut(s) 155, 228, 394
Sau3AI GATC 5 cut(s) 63, 164, 216, 403, 478
SchI GAGTC 4 cut(s) 190, 433, 501, 529
ScrFI CCNGG 3 cut(s) 180, 203, 419
SfaNI GCATC 1 cut(s) 135
SfoI GGCGCC 2 cut(s) 255, 578
SgrAI CRCCGGYG 2 cut(s) 262, 573
SgsI GGCGCGCC 1 cut(s) 138
Sse9I AATT 3 cut(s) 186, 433, 497
SseBI AGGCCT 1 cut(s) 386
SsiI CCGC 8 cut(s) 80, 97, 193, 295, 331, 349, 428, 504
SspDI GGCGCC 2 cut(s) 253, 576
StuI AGGCCT 1 cut(s) 386
StyD4I CCNGG 3 cut(s) 178, 201, 417
TaaI ACNGT 3 cut(s) 120, 275, 586
TaiI ACGT 5 cut(s) 79, 104, 294, 356, 605
TasI AATT 3 cut(s) 186, 433, 497
TfiI GAWTC 1 cut(s) 234
Tru1I TTAA 3 cut(s) 302, 342, 613
Tru9I TTAA 3 cut(s) 302, 342, 613
TseI GCWGC 3 cut(s) 154, 227, 393
TspGWI ACGGA 2 cut(s) 98, 298
XapI RAATTY 3 cut(s) 186, 433, 497
ZraI GACGTC 5 cut(s) 77, 102, 292, 354, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.