FvH4_6g27971

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Forward (+)
21517633 .. 21519347
1715 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27971.t1

Sequence Viewer

Length: 543 bp
ATGGACTCGCCGGGGAGGGAAAGTGATCGGGGACGCTGTTGGAGTCTTTTGGGGTGGAGGCGTGCCGTCACCGGCGCCGGAGGGTGGAGAACAGACAGACGTCCGCACTTTAAGCCGAAATTCGGCGGACTCGCCGGGGATGGAAAAAGGTTGGGGAAGCTGCTGGAGTCCGCTGGGGTGGAGGCGCGCCCTCGCCGGCGCCGTACGGTGGCAAACGGAGGGAAATCCGCACCGTGCAGACGTCCGCACCGTGCGGATGTCCCTCCTTTCGCCATCATACGGCACCGGCGAGGGCGCGCCTCCACCCTAGCGGACTCAAGCCGCTTCTCCGACCTTTTTCCTTCTTCGGCGAGTCCGCCGAATTCCAGTTTTCCAACCAGATCATCTAAAACTTCAAACAAAGTCAATCTGGCCGGAAAACTGAAATTTGGCAGACTCGTCGGGGATGGAAAGAGGTCGGGCAAGCTGTTGGAGTCCGCTGGGGTGGAGGCGTGCCCTTGCCGGCGCCGTACGGTGGCTAACGGAGGGAAATCCGCACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

19.43

Weight (kDa)

11.76

Isoelectric Point (pI)

71.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 103, 244
AccB1I GGYRCC 4 cut(s) 74, 198, 282, 504
AccII CGCG 2 cut(s) 187, 297
AcoI YGGCCR 1 cut(s) 411
AcsI RAATTY 3 cut(s) 119, 361, 425
AcyI GRCGYC 5 cut(s) 75, 100, 199, 241, 505
AfaI GTAC 2 cut(s) 205, 511
AfiI CCNNNNNNNGG 5 cut(s) 84, 122, 208, 279, 514
AgsI TTSAA 1 cut(s) 396
AluBI AGCT 2 cut(s) 160, 466
AluI AGCT 2 cut(s) 160, 466
AoxI GGCC 1 cut(s) 411
ApeKI GCWGC 1 cut(s) 160
ApoI RAATTY 3 cut(s) 119, 361, 425
AscI GGCGCGCC 2 cut(s) 185, 295
AspLEI GCGC 7 cut(s) 77, 187, 189, 201, 297, 299, 507
AsuC2I CCSGG 2 cut(s) 12, 136
AsuHPI GGTGA 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 497
BanI GGYRCC 4 cut(s) 74, 198, 282, 504
BbvI GCAGC 1 cut(s) 147
BccI CCATC 3 cut(s) 134, 281, 440
BceAI ACGGC 4 cut(s) 50, 186, 296, 492
BcgI CGANNNNNNTGC 2 cut(s) 421, 455
BcnI CCSGG 2 cut(s) 12, 136
BfaI CTAG 1 cut(s) 308
BfoI RGCGCY 3 cut(s) 78, 202, 508
BisI GCNGC 2 cut(s) 161, 322
BlsI GCNGC 2 cut(s) 162, 323
Bme1390I CCNGG 2 cut(s) 12, 136
BmiI GGNNCC 4 cut(s) 76, 200, 284, 506
BmrFI CCNGG 2 cut(s) 12, 136
BoxI GACNNNNGTC 1 cut(s) 99
BpmI CTGGAG 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 301
BpuMI CCSGG 2 cut(s) 12, 136
BsaHI GRCGYC 5 cut(s) 75, 100, 199, 241, 505
BsaJI CCNNGG 2 cut(s) 11, 135
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 5 cut(s) 84, 122, 208, 279, 514
Bse118I RCCGGY 4 cut(s) 71, 195, 285, 501
Bse1I ACTGG 1 cut(s) 366
BseDI CCNNGG 2 cut(s) 11, 135
BseGI GGATG 3 cut(s) 145, 262, 451
BseLI CCNNNNNNNGG 5 cut(s) 84, 122, 208, 279, 514
BseNI ACTGG 1 cut(s) 366
BsePI GCGCGC 2 cut(s) 185, 295
BseSI GKGCMC 1 cut(s) 497
BseXI GCAGC 1 cut(s) 147
BseYI CCCAGC 2 cut(s) 173, 479
BsgI GTGCAG 1 cut(s) 256
Bsh1236I CGCG 2 cut(s) 187, 297
BshFI GGCC 1 cut(s) 413
BshNI GGYRCC 4 cut(s) 74, 198, 282, 504
BsiSI CCGG 8 cut(s) 11, 72, 78, 135, 196, 286, 414, 502
BsiWI CGTACG 2 cut(s) 203, 509
BslFI GGGAC 2 cut(s) 45, 245
BslI CCNNNNNNNGG 5 cut(s) 84, 122, 208, 279, 514
BsmFI GGGAC 2 cut(s) 45, 245
BsnI GGCC 1 cut(s) 413
Bsp1286I GDGCHC 1 cut(s) 497
Bsp143I GATC 2 cut(s) 25, 380
BspANI GGCC 1 cut(s) 413
BspFNI CGCG 2 cut(s) 187, 297
BspLI GGNNCC 4 cut(s) 76, 200, 284, 506
BspT107I GGYRCC 4 cut(s) 74, 198, 282, 504
BsrFI RCCGGY 4 cut(s) 71, 195, 285, 501
BsrI ACTGG 1 cut(s) 366
BssAI RCCGGY 4 cut(s) 71, 195, 285, 501
BssECI CCNNGG 2 cut(s) 11, 135
BssHII GCGCGC 2 cut(s) 185, 295
BssMI GATC 2 cut(s) 25, 380
BssNI GRCGYC 5 cut(s) 75, 100, 199, 241, 505
Bst4CI ACNGT 5 cut(s) 208, 234, 251, 514, 540
BstACI GRCGYC 5 cut(s) 75, 100, 199, 241, 505
BstC8I GCNNGC 7 cut(s) 63, 187, 197, 297, 464, 493, 503
BstF5I GGATG 3 cut(s) 145, 262, 451
BstFNI CGCG 2 cut(s) 187, 297
BstH2I RGCGCY 3 cut(s) 78, 202, 508
BstHHI GCGC 7 cut(s) 77, 187, 189, 201, 297, 299, 507
BstKTI GATC 2 cut(s) 28, 383
BstMBI GATC 2 cut(s) 25, 380
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstPAI GACNNNNGTC 1 cut(s) 99
BstSCI CCNGG 2 cut(s) 10, 134
BstSLI GKGCMC 1 cut(s) 497
BstUI CGCG 2 cut(s) 187, 297
BstV1I GCAGC 1 cut(s) 147
BsuRI GGCC 1 cut(s) 413
BtsCI GGATG 3 cut(s) 145, 262, 451
Cac8I GCNNGC 7 cut(s) 63, 187, 197, 297, 464, 493, 503
CfoI GCGC 7 cut(s) 77, 187, 189, 201, 297, 299, 507
Cfr10I RCCGGY 4 cut(s) 71, 195, 285, 501
CseI GACGC 1 cut(s) 42
Csp6I GTAC 2 cut(s) 204, 510
CviJI RGCY 6 cut(s) 115, 160, 321, 413, 466, 518
CviKI_1 RGCY 6 cut(s) 115, 160, 321, 413, 466, 518
CviQI GTAC 2 cut(s) 204, 510
DinI GGCGCC 3 cut(s) 76, 200, 506
DpnI GATC 2 cut(s) 27, 382
DpnII GATC 2 cut(s) 25, 380
EaeI YGGCCR 1 cut(s) 411
EciI GGCGGA 2 cut(s) 141, 345
EcoRI GAATTC 1 cut(s) 361
EgeI GGCGCC 3 cut(s) 76, 200, 506
EheI GGCGCC 3 cut(s) 76, 200, 506
FaiI YATR 1 cut(s) 278
FaqI GGGAC 2 cut(s) 45, 245
Fnu4HI GCNGC 2 cut(s) 161, 322
FokI GGATG 3 cut(s) 152, 269, 458
Fsp4HI GCNGC 2 cut(s) 161, 322
FspBI CTAG 1 cut(s) 308
GlaI GCGC 7 cut(s) 76, 186, 188, 200, 296, 298, 506
GluI GCNGC 2 cut(s) 161, 322
GsaI CCCAGC 2 cut(s) 177, 483
GsuI CTGGAG 1 cut(s) 185
HaeII RGCGCY 3 cut(s) 78, 202, 508
HaeIII GGCC 1 cut(s) 413
HapII CCGG 8 cut(s) 11, 72, 78, 135, 196, 286, 414, 502
HgaI GACGC 1 cut(s) 42
HhaI GCGC 7 cut(s) 77, 187, 189, 201, 297, 299, 507
Hin1I GRCGYC 5 cut(s) 75, 100, 199, 241, 505
Hin6I GCGC 7 cut(s) 75, 185, 187, 199, 295, 297, 505
HinP1I GCGC 7 cut(s) 75, 185, 187, 199, 295, 297, 505
HinfI GANTC 8 cut(s) 5, 43, 129, 167, 314, 352, 435, 473
HpaII CCGG 8 cut(s) 11, 72, 78, 135, 196, 286, 414, 502
HphI GGTGA 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 331
Hpy99I CGWCG 1 cut(s) 443
HpyAV CCTTC 1 cut(s) 351
HpyCH4III ACNGT 5 cut(s) 208, 234, 251, 514, 540
HpyCH4IV ACGT 2 cut(s) 100, 241
HpyCH4V TGCA 1 cut(s) 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
HpySE526I ACGT 2 cut(s) 100, 241
Hsp92I GRCGYC 5 cut(s) 75, 100, 199, 241, 505
HspAI GCGC 7 cut(s) 75, 185, 187, 199, 295, 297, 505
KasI GGCGCC 3 cut(s) 74, 198, 504
KroI GCCGGC 2 cut(s) 195, 501
KroNI GCCGGC 2 cut(s) 197, 503
Kzo9I GATC 2 cut(s) 25, 380
Lsp1109I GCAGC 1 cut(s) 147
MaeI CTAG 1 cut(s) 308
MaeII ACGT 2 cut(s) 100, 241
MaeIII GTNAC 1 cut(s) 67
MalI GATC 2 cut(s) 27, 382
MboI GATC 2 cut(s) 25, 380
MboII GAAGA 1 cut(s) 336
MhlI GDGCHC 1 cut(s) 497
MluCI AATT 3 cut(s) 119, 361, 425
Mly113I GGCGCC 3 cut(s) 75, 199, 505
MlyI GAGTC 7 cut(s) 52, 123, 176, 308, 361, 429, 482
MmeI TCCRAC 4 cut(s) 20, 354, 398, 450
MreI CGCCGGCG 1 cut(s) 195
MroNI GCCGGC 2 cut(s) 195, 501
MseI TTAA 1 cut(s) 111
MspA1I CMGCKG 2 cut(s) 173, 479
MspI CCGG 8 cut(s) 11, 72, 78, 135, 196, 286, 414, 502
MspR9I CCNGG 2 cut(s) 12, 136
MvnI CGCG 2 cut(s) 187, 297
MwoI GCNNNNNNNGC 1 cut(s) 112
NaeI GCCGGC 2 cut(s) 197, 503
NarI GGCGCC 3 cut(s) 75, 199, 505
NciI CCSGG 2 cut(s) 12, 136
NdeII GATC 2 cut(s) 25, 380
NgoMIV GCCGGC 2 cut(s) 195, 501
NlaIV GGNNCC 4 cut(s) 76, 200, 284, 506
NmuCI GTSAC 1 cut(s) 67
PalAI GGCGCGCC 2 cut(s) 185, 295
PauI GCGCGC 2 cut(s) 185, 295
PcsI WCGNNNNNNNCGW 3 cut(s) 199, 247, 286
PdiI GCCGGC 2 cut(s) 197, 503
Pfl23II CGTACG 2 cut(s) 203, 509
PkrI GCNGC 2 cut(s) 162, 323
PleI GAGTC 7 cut(s) 51, 123, 175, 308, 360, 429, 481
PluTI GGCGCC 3 cut(s) 78, 202, 508
PpsI GAGTC 7 cut(s) 51, 123, 175, 308, 360, 429, 481
PshAI GACNNNNGTC 1 cut(s) 99
PspFI CCCAGC 2 cut(s) 173, 479
PspLI CGTACG 2 cut(s) 203, 509
PspN4I GGNNCC 4 cut(s) 76, 200, 284, 506
PteI GCGCGC 2 cut(s) 185, 295
RsaI GTAC 2 cut(s) 205, 511
RsaNI GTAC 2 cut(s) 204, 510
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 2 cut(s) 161, 322
Sau3AI GATC 2 cut(s) 25, 380
SchI GAGTC 7 cut(s) 52, 123, 176, 308, 361, 429, 482
ScrFI CCNGG 2 cut(s) 12, 136
SduI GDGCHC 1 cut(s) 497
SetI ASST 7 cut(s) 103, 152, 162, 244, 336, 458, 468
SfoI GGCGCC 3 cut(s) 76, 200, 506
SgrAI CRCCGGYG 3 cut(s) 71, 195, 285
SgsI GGCGCGCC 2 cut(s) 185, 295
SmlI CTYRAG 1 cut(s) 316
SmoI CTYRAG 1 cut(s) 316
Sse9I AATT 3 cut(s) 119, 361, 425
SspDI GGCGCC 3 cut(s) 74, 198, 504
SspMI CTAG 1 cut(s) 308
StyD4I CCNGG 2 cut(s) 10, 134
TaaI ACNGT 5 cut(s) 208, 234, 251, 514, 540
TaiI ACGT 2 cut(s) 103, 244
TasI AATT 3 cut(s) 119, 361, 425
TauI GCSGC 1 cut(s) 324
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 67
TspGWI ACGGA 2 cut(s) 231, 537
XapI RAATTY 3 cut(s) 119, 361, 425
XspI CTAG 1 cut(s) 308
ZraI GACGTC 2 cut(s) 101, 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.