FvH4_3g26411

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Forward (+)
19458206 .. 19458552
347 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g26411.t1

Sequence Viewer

Length: 255 bp
ATGAAGCGCACGTGTGTAAGTGCGCACGGAGCTCCGTTCACCACCGTCCGACGCCGACAACAGCGCGCCTCCACCCCAGCGGACTCCAGCAGCAAACTAGAATTCGGCGGCCTCACTGGGGATCGTCTAGGAGGGAAAGTGATCGGGGACACTGCTAGAGTCCGCTGGGGTGGAGACGCGCCGTCGTCGGCGCCGGAGGGTGACGAATGGAGCTTCGTGTGCACTGCGGAAGTGCGGTCCGCATCGTTTCCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

85

Amino Acids

8.91

Weight (kDa)

9.38

Isoelectric Point (pI)

64.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 24
AccB1I GGYRCC 1 cut(s) 190
AccII CGCG 2 cut(s) 66, 179
AciI CCGC 6 cut(s) 80, 108, 163, 227, 235, 240
AclWI GGATC 1 cut(s) 129
AcsI RAATTY 1 cut(s) 101
AcvI CACGTG 1 cut(s) 12
AcyI GRCGYC 2 cut(s) 52, 191
AfiI CCNNNNNNNGG 1 cut(s) 118
AflIII ACRYGT 1 cut(s) 11
AhdI GACNNNNNGTC 1 cut(s) 181
AluBI AGCT 2 cut(s) 32, 213
AluI AGCT 2 cut(s) 32, 213
Alw21I GWGCWC 2 cut(s) 34, 224
Alw26I GTCTC 1 cut(s) 168
Alw44I GTGCAC 1 cut(s) 220
AlwI GGATC 1 cut(s) 129
AoxI GGCC 1 cut(s) 109
ApaLI GTGCAC 1 cut(s) 220
ApeKI GCWGC 1 cut(s) 90
ApoI RAATTY 1 cut(s) 101
AspLEI GCGC 6 cut(s) 9, 25, 66, 68, 181, 193
AspS9I GGNCC 1 cut(s) 237
AsuHPI GGTGA 2 cut(s) 31, 212
AvaII GGWCC 1 cut(s) 237
BaeGI GKGCMC 1 cut(s) 224
BanI GGYRCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 34
BbrPI CACGTG 1 cut(s) 12
Bbv12I GWGCWC 2 cut(s) 34, 224
BbvI GCAGC 1 cut(s) 102
BceAI ACGGC 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 168
BfaI CTAG 3 cut(s) 98, 128, 156
BfoI RGCGCY 1 cut(s) 194
BisI GCNGC 2 cut(s) 91, 109
BlsI GCNGC 2 cut(s) 92, 110
Bme18I GGWCC 1 cut(s) 237
BmeRI GACNNNNNGTC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 237
BmiI GGNNCC 1 cut(s) 192
BmrI ACTGGG 1 cut(s) 126
BmsI GCATC 1 cut(s) 251
BmuI ACTGGG 1 cut(s) 126
BpmI CTGGAG 1 cut(s) 70
BsaAI YACGTR 1 cut(s) 12
BsaHI GRCGYC 2 cut(s) 52, 191
BsaXI ACNNNNNCTCC 2 cut(s) 123, 153
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 118
BseNI ACTGG 1 cut(s) 121
BsePI GCGCGC 1 cut(s) 64
BseSI GKGCMC 1 cut(s) 224
BseXI GCAGC 1 cut(s) 102
BseYI CCCAGC 2 cut(s) 76, 165
Bsh1236I CGCG 2 cut(s) 66, 179
BshFI GGCC 1 cut(s) 111
BshNI GGYRCC 1 cut(s) 190
BsiHKAI GWGCWC 2 cut(s) 34, 224
BsiSI CCGG 1 cut(s) 194
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 1 cut(s) 168
BsmBI CGTCTC 1 cut(s) 168
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 111
Bsp1286I GDGCHC 2 cut(s) 34, 224
Bsp143I GATC 2 cut(s) 121, 141
BspACI CCGC 6 cut(s) 80, 108, 163, 227, 235, 240
BspANI GGCC 1 cut(s) 111
BspFNI CGCG 2 cut(s) 66, 179
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 1 cut(s) 129
BspT107I GGYRCC 1 cut(s) 190
BsrI ACTGG 1 cut(s) 121
BssHII GCGCGC 1 cut(s) 64
BssMI GATC 2 cut(s) 121, 141
BssNI GRCGYC 2 cut(s) 52, 191
Bst4CI ACNGT 1 cut(s) 46
BstACI GRCGYC 2 cut(s) 52, 191
BstBAI YACGTR 1 cut(s) 12
BstC8I GCNNGC 1 cut(s) 66
BstFNI CGCG 2 cut(s) 66, 179
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 6 cut(s) 9, 25, 66, 68, 181, 193
BstKTI GATC 2 cut(s) 124, 144
BstMAI GTCTC 1 cut(s) 168
BstMBI GATC 2 cut(s) 121, 141
BstMWI GCNNNNNNNGC 2 cut(s) 29, 219
BstSLI GKGCMC 1 cut(s) 224
BstUI CGCG 2 cut(s) 66, 179
BstV1I GCAGC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 111
BtsI GCAGTG 2 cut(s) 150, 222
BtsIMutI CAGTG 3 cut(s) 114, 150, 222
Cac8I GCNNGC 1 cut(s) 66
CfoI GCGC 6 cut(s) 9, 25, 66, 68, 181, 193
Cfr13I GGNCC 1 cut(s) 237
CpoI CGGWCCG 1 cut(s) 237
CseI GACGC 2 cut(s) 60, 185
CspI CGGWCCG 1 cut(s) 237
CviJI RGCY 3 cut(s) 32, 111, 213
CviKI_1 RGCY 3 cut(s) 32, 111, 213
DinI GGCGCC 1 cut(s) 192
DpnI GATC 2 cut(s) 123, 143
DpnII GATC 2 cut(s) 121, 141
DriI GACNNNNNGTC 1 cut(s) 181
Eam1105I GACNNNNNGTC 1 cut(s) 181
Ecl136II GAGCTC 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 34
Eco47I GGWCC 1 cut(s) 237
Eco53kI GAGCTC 1 cut(s) 32
Eco72I CACGTG 1 cut(s) 12
EcoICRI GAGCTC 1 cut(s) 32
EcoRI GAATTC 1 cut(s) 101
EcoT38I GRGCYC 1 cut(s) 34
EgeI GGCGCC 1 cut(s) 192
EheI GGCGCC 1 cut(s) 192
Esp3I CGTCTC 1 cut(s) 168
FaqI GGGAC 1 cut(s) 161
Fnu4HI GCNGC 2 cut(s) 91, 109
FriOI GRGCYC 1 cut(s) 34
Fsp4HI GCNGC 2 cut(s) 91, 109
FspAI RTGCGCAY 1 cut(s) 24
FspBI CTAG 3 cut(s) 98, 128, 156
FspI TGCGCA 1 cut(s) 24
GlaI GCGC 6 cut(s) 8, 24, 65, 67, 180, 192
GluI GCNGC 2 cut(s) 91, 109
GsaI CCCAGC 2 cut(s) 80, 169
GsuI CTGGAG 1 cut(s) 70
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 1 cut(s) 111
HapII CCGG 1 cut(s) 194
HgaI GACGC 2 cut(s) 60, 185
HhaI GCGC 6 cut(s) 9, 25, 66, 68, 181, 193
Hin1I GRCGYC 2 cut(s) 52, 191
Hin6I GCGC 6 cut(s) 7, 23, 64, 66, 179, 191
HinP1I GCGC 6 cut(s) 7, 23, 64, 66, 179, 191
HinfI GANTC 2 cut(s) 83, 159
HpaII CCGG 1 cut(s) 194
HphI GGTGA 2 cut(s) 31, 212
Hpy166II GTNNAC 2 cut(s) 39, 222
Hpy188I TCNGA 1 cut(s) 50
Hpy8I GTNNAC 2 cut(s) 39, 222
Hpy99I CGWCG 3 cut(s) 54, 187, 190
HpyCH4III ACNGT 1 cut(s) 46
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 1 cut(s) 222
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 219
HpySE526I ACGT 1 cut(s) 11
Hsp92I GRCGYC 2 cut(s) 52, 191
HspAI GCGC 6 cut(s) 7, 23, 64, 66, 179, 191
KasI GGCGCC 1 cut(s) 190
Kzo9I GATC 2 cut(s) 121, 141
LmnI GCTCC 3 cut(s) 29, 37, 210
LpnPI CCDG 5 cut(s) 90, 100, 102, 151, 207
Lsp1109I GCAGC 1 cut(s) 102
LweI GCATC 1 cut(s) 251
MaeI CTAG 3 cut(s) 98, 128, 156
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 123, 143
MboI GATC 2 cut(s) 121, 141
MhlI GDGCHC 2 cut(s) 34, 224
MluCI AATT 1 cut(s) 101
Mly113I GGCGCC 1 cut(s) 191
MlyI GAGTC 2 cut(s) 77, 168
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 4 cut(s) 79, 122, 125, 190
MspA1I CMGCKG 2 cut(s) 80, 165
MspI CCGG 1 cut(s) 194
MvnI CGCG 2 cut(s) 66, 179
MwoI GCNNNNNNNGC 2 cut(s) 29, 219
NarI GGCGCC 1 cut(s) 191
NdeII GATC 2 cut(s) 121, 141
NlaIV GGNNCC 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 200
NsbI TGCGCA 1 cut(s) 24
PauI GCGCGC 1 cut(s) 64
PkrI GCNGC 2 cut(s) 92, 110
PleI GAGTC 2 cut(s) 77, 167
PluTI GGCGCC 1 cut(s) 194
PmaCI CACGTG 1 cut(s) 12
PmlI CACGTG 1 cut(s) 12
PpsI GAGTC 2 cut(s) 77, 167
Ppu21I YACGTR 1 cut(s) 12
Psp124BI GAGCTC 1 cut(s) 34
PspCI CACGTG 1 cut(s) 12
PspFI CCCAGC 2 cut(s) 76, 165
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 237
PteI GCGCGC 1 cut(s) 64
Rsr2I CGGWCCG 1 cut(s) 237
RsrII CGGWCCG 1 cut(s) 237
SacI GAGCTC 1 cut(s) 34
SatI GCNGC 2 cut(s) 91, 109
Sau3AI GATC 2 cut(s) 121, 141
Sau96I GGNCC 1 cut(s) 237
SchI GAGTC 2 cut(s) 77, 168
SduI GDGCHC 2 cut(s) 34, 224
SetI ASST 3 cut(s) 14, 34, 215
SfaNI GCATC 1 cut(s) 251
SfoI GGCGCC 1 cut(s) 192
SinI GGWCC 1 cut(s) 237
Sse9I AATT 1 cut(s) 101
SsiI CCGC 6 cut(s) 80, 108, 163, 227, 235, 240
SspDI GGCGCC 1 cut(s) 190
SspMI CTAG 3 cut(s) 98, 128, 156
SstI GAGCTC 1 cut(s) 34
TaaI ACNGT 1 cut(s) 46
TaiI ACGT 1 cut(s) 14
TasI AATT 1 cut(s) 101
TauI GCSGC 1 cut(s) 111
TscAI CASTG 3 cut(s) 121, 157, 229
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 1 cut(s) 90
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 3 cut(s) 24, 42, 240
TspRI CASTG 3 cut(s) 121, 157, 229
VneI GTGCAC 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 237
XapI RAATTY 1 cut(s) 101
XspI CTAG 3 cut(s) 98, 128, 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.