FvH4_3g30190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Forward (+)
23398716 .. 23401306
2591 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30190.t1

Sequence Viewer

Length: 747 bp
ATGACTGCGCACCTCCACCCTAGCGGCCTCCAGCAGCGTCCCCGATCACTTTCTCTCCCCAGCGAGTCCGCCGAATTCCAGTTTTCCAGCGAGATCACTCAAAACTTCAAACAAAATCGATCTCGCCGGAAACTAGAATTCGACGGACTAGCCGGGGAGGGAAATCCGACCCAGACGGCGCTCTCTCTGCCACTGTTTTCGCCGCCGCAAATCTCCGCTGTCGGCCACGGCTGCGCGCGTGACCAACACCGATGGAACCGCCTCTTCGAGCCCGTTCCTTCTGTGGCCAGAGATCGTACATGCATGGAGTACTGTTCTGGCGAGGCTGACAGCTCCGACGAGTCTCCGGTGTTTATAGTTGGCTTCGAGGGTGAAGGCCGAGGCCTTGGAGTAGAAAAGGAAGAGAAGAAGGGAGAAAGAAGGACCGAGAGAGCAGCTATGATACTCTGTGGGTGCAGAGATCACTTTCAAAAGCAAATCAAATTCAAAAAGGGGCAAATCGGACTAGAAGAGAAAGGAGGAGCAGCTATGCTAGTTTCAGGTTCAGCCGGGCCACACTTGGGTGTAGAGAGCGATTTTGGCGAGTCTTCAAAACCGGTAAAGAAGGTGAGAAGCTACTGCTCTGTTTCGGATTTTGGTGATTGGTTGGTAGTTGAATTTTGTCTGACGTTTGGGCGGTTTGGCTTGATATTGGTGGAAGGCAGAGGCTTAGTTGAGAAAGCTCTGTTGAGCTTGTCGTGGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

27.31

Weight (kDa)

7.01

Isoelectric Point (pI)

46.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 9
AccII CGCG 2 cut(s) 236, 238
AciI CCGC 7 cut(s) 24, 69, 203, 206, 216, 259, 676
AcoI YGGCCR 2 cut(s) 223, 285
AcsI RAATTY 4 cut(s) 74, 137, 482, 656
AfaI GTAC 2 cut(s) 298, 311
AfiI CCNNNNNNNGG 1 cut(s) 560
AgeI ACCGGT 1 cut(s) 595
AgsI TTSAA 5 cut(s) 109, 470, 487, 591, 656
AleI CACNNNNGTG 1 cut(s) 561
AluBI AGCT 6 cut(s) 333, 437, 527, 615, 722, 732
AluI AGCT 6 cut(s) 333, 437, 527, 615, 722, 732
Alw26I GTCTC 1 cut(s) 348
AoxI GGCC 6 cut(s) 25, 223, 285, 376, 382, 551
ApeKI GCWGC 4 cut(s) 34, 231, 434, 524
ApoI RAATTY 4 cut(s) 74, 137, 482, 656
AsiGI ACCGGT 1 cut(s) 595
AspLEI GCGC 4 cut(s) 10, 181, 236, 238
AspS9I GGNCC 2 cut(s) 423, 551
AsuC2I CCSGG 2 cut(s) 154, 550
AsuHPI GGTGA 3 cut(s) 383, 619, 650
AvaII GGWCC 1 cut(s) 423
BalI TGGCCA 1 cut(s) 287
BanII GRGCYC 1 cut(s) 273
BbsI GAAGAC 1 cut(s) 579
BbvI GCAGC 4 cut(s) 46, 218, 446, 536
BccI CCATC 1 cut(s) 246
BceAI ACGGC 2 cut(s) 192, 244
BcnI CCSGG 2 cut(s) 154, 550
BcoDI GTCTC 1 cut(s) 348
BfaI CTAG 5 cut(s) 21, 134, 149, 506, 533
BfoI RGCGCY 1 cut(s) 182
BisI GCNGC 7 cut(s) 25, 35, 203, 206, 232, 435, 525
BlsI GCNGC 7 cut(s) 26, 36, 204, 207, 233, 436, 526
BmcAI AGTACT 1 cut(s) 311
Bme1390I CCNGG 2 cut(s) 154, 550
Bme18I GGWCC 1 cut(s) 423
BmgT120I GGNCC 2 cut(s) 423, 551
BmiI GGNNCC 1 cut(s) 257
BmrFI CCNGG 2 cut(s) 154, 550
BpiI GAAGAC 1 cut(s) 579
BpmI CTGGAG 1 cut(s) 14
BpuMI CCSGG 2 cut(s) 154, 550
Bsa29I ATCGAT 1 cut(s) 118
BsaJI CCNNGG 4 cut(s) 153, 226, 379, 385
BsaWI WCCGGW 2 cut(s) 346, 595
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
Bsc4I CCNNNNNNNGG 1 cut(s) 560
Bse118I RCCGGY 1 cut(s) 595
Bse1I ACTGG 1 cut(s) 79
BseCI ATCGAT 1 cut(s) 118
BseDI CCNNGG 4 cut(s) 153, 226, 379, 385
BseLI CCNNNNNNNGG 1 cut(s) 560
BseNI ACTGG 1 cut(s) 79
BsePI GCGCGC 1 cut(s) 234
BseRI GAGGAG 1 cut(s) 534
BseXI GCAGC 4 cut(s) 46, 218, 446, 536
BseYI CCCAGC 1 cut(s) 59
BsgI GTGCAG 1 cut(s) 475
Bsh1236I CGCG 2 cut(s) 236, 238
BshFI GGCC 6 cut(s) 27, 225, 287, 378, 384, 553
BshTI ACCGGT 1 cut(s) 595
BshVI ATCGAT 1 cut(s) 118
BsiSI CCGG 5 cut(s) 127, 153, 347, 549, 596
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 1 cut(s) 560
BsmAI GTCTC 1 cut(s) 348
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 6 cut(s) 27, 225, 287, 378, 384, 553
Bsp1286I GDGCHC 1 cut(s) 273
Bsp143I GATC 5 cut(s) 44, 93, 119, 292, 460
BspACI CCGC 7 cut(s) 24, 69, 203, 206, 216, 259, 676
BspANI GGCC 6 cut(s) 27, 225, 287, 378, 384, 553
BspDI ATCGAT 1 cut(s) 118
BspFNI CGCG 2 cut(s) 236, 238
BspLI GGNNCC 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 595
BsrI ACTGG 1 cut(s) 79
BssAI RCCGGY 1 cut(s) 595
BssECI CCNNGG 4 cut(s) 153, 226, 379, 385
BssHII GCGCGC 1 cut(s) 234
BssMI GATC 5 cut(s) 44, 93, 119, 292, 460
BssT1I CCWWGG 1 cut(s) 385
Bst4CI ACNGT 2 cut(s) 195, 314
Bst6I CTCTTC 3 cut(s) 269, 396, 504
BstC8I GCNNGC 1 cut(s) 236
BstDEI CTNAG 1 cut(s) 709
BstDSI CCRYGG 1 cut(s) 226
BstFNI CGCG 2 cut(s) 236, 238
BstH2I RGCGCY 1 cut(s) 182
BstHHI GCGC 4 cut(s) 10, 181, 236, 238
BstKTI GATC 5 cut(s) 47, 96, 122, 295, 463
BstMAI GTCTC 1 cut(s) 348
BstMBI GATC 5 cut(s) 44, 93, 119, 292, 460
BstMWI GCNNNNNNNGC 3 cut(s) 187, 231, 579
BstNSI RCATGY 1 cut(s) 303
BstSCI CCNGG 2 cut(s) 152, 548
BstUI CGCG 2 cut(s) 236, 238
BstV1I GCAGC 4 cut(s) 46, 218, 446, 536
BstV2I GAAGAC 1 cut(s) 579
Bsu15I ATCGAT 1 cut(s) 118
BsuRI GGCC 6 cut(s) 27, 225, 287, 378, 384, 553
BsuTUI ATCGAT 1 cut(s) 118
BtgI CCRYGG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 191
Cac8I GCNNGC 1 cut(s) 236
CfoI GCGC 4 cut(s) 10, 181, 236, 238
Cfr10I RCCGGY 1 cut(s) 595
Cfr13I GGNCC 2 cut(s) 423, 551
ClaI ATCGAT 1 cut(s) 118
CseI GACGC 1 cut(s) 26
Csp6I GTAC 2 cut(s) 297, 310
CspAI ACCGGT 1 cut(s) 595
CviAII CATG 2 cut(s) 300, 304
CviQI GTAC 2 cut(s) 297, 310
DdeI CTNAG 1 cut(s) 709
DpnI GATC 5 cut(s) 46, 95, 121, 294, 462
DpnII GATC 5 cut(s) 44, 93, 119, 292, 460
EaeI YGGCCR 2 cut(s) 223, 285
Eam1104I CTCTTC 3 cut(s) 269, 396, 504
EarI CTCTTC 3 cut(s) 269, 396, 504
EciI GGCGGA 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 385
Eco147I AGGCCT 1 cut(s) 384
Eco24I GRGCYC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 423
EcoRI GAATTC 2 cut(s) 74, 137
EcoT14I CCWWGG 1 cut(s) 385
EcoT22I ATGCAT 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 385
FaeI CATG 2 cut(s) 303, 307
FaiI YATR 5 cut(s) 301, 305, 356, 440, 530
FaqI GGGAC 1 cut(s) 24
FatI CATG 2 cut(s) 299, 303
Fnu4HI GCNGC 7 cut(s) 25, 35, 203, 206, 232, 435, 525
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 7 cut(s) 25, 35, 203, 206, 232, 435, 525
FspBI CTAG 5 cut(s) 21, 134, 149, 506, 533
FspI TGCGCA 1 cut(s) 9
GlaI GCGC 4 cut(s) 9, 180, 235, 237
GluI GCNGC 7 cut(s) 25, 35, 203, 206, 232, 435, 525
GsaI CCCAGC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 14
HaeII RGCGCY 1 cut(s) 182
HaeIII GGCC 6 cut(s) 27, 225, 287, 378, 384, 553
HapII CCGG 5 cut(s) 127, 153, 347, 549, 596
HgaI GACGC 1 cut(s) 26
HhaI GCGC 4 cut(s) 10, 181, 236, 238
Hin1II CATG 2 cut(s) 303, 307
Hin6I GCGC 4 cut(s) 8, 179, 234, 236
HinP1I GCGC 4 cut(s) 8, 179, 234, 236
HinfI GANTC 3 cut(s) 65, 341, 584
HpaII CCGG 5 cut(s) 127, 153, 347, 549, 596
HphI GGTGA 3 cut(s) 383, 619, 650
Hpy188I TCNGA 5 cut(s) 168, 337, 503, 631, 666
Hpy99I CGWCG 2 cut(s) 146, 341
HpyAV CCTTC 6 cut(s) 288, 368, 403, 414, 598, 692
HpyCH4III ACNGT 2 cut(s) 195, 314
HpyCH4IV ACGT 1 cut(s) 668
HpyCH4V TGCA 2 cut(s) 303, 456
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 231, 579
HpyF3I CTNAG 1 cut(s) 709
HpySE526I ACGT 1 cut(s) 668
Hsp92II CATG 2 cut(s) 303, 307
HspAI GCGC 4 cut(s) 8, 179, 234, 236
Kzo9I GATC 5 cut(s) 44, 93, 119, 292, 460
LmnI GCTCC 2 cut(s) 338, 521
Lsp1109I GCAGC 4 cut(s) 46, 218, 446, 536
MaeI CTAG 5 cut(s) 21, 134, 149, 506, 533
MaeII ACGT 1 cut(s) 668
MaeIII GTNAC 1 cut(s) 239
MalI GATC 5 cut(s) 46, 95, 121, 294, 462
MboI GATC 5 cut(s) 44, 93, 119, 292, 460
MboII GAAGA 5 cut(s) 256, 413, 418, 521, 579
MhlI GDGCHC 1 cut(s) 273
MlsI TGGCCA 1 cut(s) 287
MluCI AATT 4 cut(s) 74, 137, 482, 656
MluNI TGGCCA 1 cut(s) 287
MlyI GAGTC 3 cut(s) 74, 350, 593
MmeI TCCRAC 2 cut(s) 191, 360
MnlI CCTC 9 cut(s) 23, 38, 151, 272, 316, 361, 374, 512, 698
Mox20I TGGCCA 1 cut(s) 287
Mph1103I ATGCAT 1 cut(s) 305
MscI TGGCCA 1 cut(s) 287
MslI CAYNNNNRTG 1 cut(s) 561
Msp20I TGGCCA 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 5 cut(s) 127, 153, 347, 549, 596
MspR9I CCNGG 2 cut(s) 154, 550
MvnI CGCG 2 cut(s) 236, 238
MwoI GCNNNNNNNGC 3 cut(s) 187, 231, 579
NciI CCSGG 2 cut(s) 154, 550
NdeII GATC 5 cut(s) 44, 93, 119, 292, 460
NlaIII CATG 2 cut(s) 303, 307
NlaIV GGNNCC 1 cut(s) 257
NmeAIII GCCGAG 1 cut(s) 404
NmuCI GTSAC 1 cut(s) 239
NsbI TGCGCA 1 cut(s) 9
NsiI ATGCAT 1 cut(s) 305
NspI RCATGY 1 cut(s) 303
OliI CACNNNNGTG 1 cut(s) 561
PauI GCGCGC 1 cut(s) 234
PceI AGGCCT 1 cut(s) 384
PinAI ACCGGT 1 cut(s) 595
PkrI GCNGC 7 cut(s) 26, 36, 204, 207, 233, 436, 526
PleI GAGTC 3 cut(s) 73, 349, 592
PpsI GAGTC 3 cut(s) 73, 349, 592
PspFI CCCAGC 1 cut(s) 59
PspN4I GGNNCC 1 cut(s) 257
PspPI GGNCC 2 cut(s) 423, 551
PteI GCGCGC 1 cut(s) 234
RsaI GTAC 2 cut(s) 298, 311
RsaNI GTAC 2 cut(s) 297, 310
RseI CAYNNNNRTG 1 cut(s) 561
SatI GCNGC 7 cut(s) 25, 35, 203, 206, 232, 435, 525
Sau3AI GATC 5 cut(s) 44, 93, 119, 292, 460
Sau96I GGNCC 2 cut(s) 423, 551
ScaI AGTACT 1 cut(s) 311
SchI GAGTC 3 cut(s) 74, 350, 593
ScrFI CCNGG 2 cut(s) 154, 550
SduI GDGCHC 1 cut(s) 273
SinI GGWCC 1 cut(s) 423
SmiMI CAYNNNNRTG 1 cut(s) 561
Sse9I AATT 4 cut(s) 74, 137, 482, 656
SseBI AGGCCT 1 cut(s) 384
SsiI CCGC 7 cut(s) 24, 69, 203, 206, 216, 259, 676
SspMI CTAG 5 cut(s) 21, 134, 149, 506, 533
StuI AGGCCT 1 cut(s) 384
StyD4I CCNGG 2 cut(s) 152, 548
StyI CCWWGG 1 cut(s) 385
TaaI ACNGT 2 cut(s) 195, 314
TaiI ACGT 1 cut(s) 671
TaqI TCGA 4 cut(s) 118, 141, 267, 366
TaqII GACCGA 1 cut(s) 440
TasI AATT 4 cut(s) 74, 137, 482, 656
TatI WGTACW 1 cut(s) 309
TauI GCSGC 3 cut(s) 27, 205, 208
TscAI CASTG 1 cut(s) 198
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 4 cut(s) 34, 231, 434, 524
Tsp45I GTSAC 1 cut(s) 239
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 423
XapI RAATTY 4 cut(s) 74, 137, 482, 656
XceI RCATGY 1 cut(s) 303
XspI CTAG 5 cut(s) 21, 134, 149, 506, 533
ZrmI AGTACT 1 cut(s) 311
Zsp2I ATGCAT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.