FvH4_2g19260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Reverse (-)
16409863 .. 16412182
2320 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19260.t1

Sequence Viewer

Length: 636 bp
ATGCCGATGCCTTGTGGTTTGCTGCCGGACGGGGATTTCGATGTCATCGATGAAGATTGGATGCTGGATCTAGGCTTGGCCAAGGCTAATGGGCTCGGGTTGGCTCTTGTCAAGTCTATGGAGGGTTGTTTAGGTCCAAGGTTGACTTTCAATTTTGGGCCTCCAAGGTTTAAAAGTGGTATAATTCCTGAAGTTGCTGCTCCAAATGGTTGGGAAGACCAGAGCGCAGTTAGTGTTTCAAAAAGTCTTTATTCTCCATCCGGCGACGCGTCCAACGCTCAGATGGCAAAATCGGCGATGAGGGAGAGTGACATCAAAGTGGTTGACAATGATTGGAGTGCTCTGGCCGTGAATACACGAGTTGGCTCAGATCAGGTTGCTGATCTAGGTTGGCAAGATGGCTGTGTGTTTGTGACCTTGGTGTCTTTGATCTGTGACGGGTCTAATGAAAACGCGATGGCGATGATGAGGAGCGGGGGTGTAGTGGTTGGTTTTCTGGTAGCGGCGGCAGCAAGGTTGGTTGACGCCTTGATCTTCATGTCCCTAGGGTTCAGGCTTGGGCCATACTTTCAGAAGTTTGGGCTGGATTCTATTATTGGGCTGGCTCAGTTCTGTTTTTGTTATTTTTGTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

22.52

Weight (kDa)

4.36

Isoelectric Point (pI)

26.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 421
AccBSI CCGCTC 1 cut(s) 474
AccII CGCG 2 cut(s) 269, 455
AciI CCGC 3 cut(s) 474, 503, 506
AclWI GGATC 1 cut(s) 75
AcoI YGGCCR 2 cut(s) 78, 345
AcuI CTGAAG 1 cut(s) 210
AcyI GRCGYC 1 cut(s) 525
AflIII ACRYGT 1 cut(s) 267
AgsI TTSAA 2 cut(s) 151, 240
Alw21I GWGCWC 1 cut(s) 343
AlwI GGATC 1 cut(s) 75
Ama87I CYCGRG 1 cut(s) 95
AoxI GGCC 4 cut(s) 78, 158, 345, 560
ApeKI GCWGC 3 cut(s) 22, 197, 509
ArsI GACNNNNNNTTYG 2 cut(s) 20, 52
AspA2I CCTAGG 1 cut(s) 544
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 3 cut(s) 134, 158, 560
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 1 cut(s) 134
AvrII CCTAGG 1 cut(s) 544
BalI TGGCCA 1 cut(s) 80
BanII GRGCYC 1 cut(s) 96
BauI CACGAG 1 cut(s) 357
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 343
BbvI GCAGC 3 cut(s) 9, 184, 521
BccI CCATC 4 cut(s) 265, 277, 392, 451
BceAI ACGGC 1 cut(s) 332
BfaI CTAG 3 cut(s) 71, 386, 545
BisI GCNGC 5 cut(s) 23, 198, 504, 507, 510
BlnI CCTAGG 1 cut(s) 544
BlsI GCNGC 5 cut(s) 24, 199, 505, 508, 511
Bme18I GGWCC 1 cut(s) 134
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 3 cut(s) 134, 158, 560
BmsI GCATC 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 222
Bsa29I ATCGAT 1 cut(s) 48
BsaHI GRCGYC 1 cut(s) 525
BsaJI CCNNGG 5 cut(s) 81, 137, 164, 417, 544
BsaXI ACNNNNNCTCC 2 cut(s) 463, 493
BseCI ATCGAT 1 cut(s) 48
BseDI CCNNGG 5 cut(s) 81, 137, 164, 417, 544
BseGI GGATG 2 cut(s) 66, 257
BseMII CTCAG 3 cut(s) 293, 381, 620
BseRI GAGGAG 1 cut(s) 484
BseXI GCAGC 3 cut(s) 9, 184, 521
Bsh1236I CGCG 2 cut(s) 269, 455
BshFI GGCC 4 cut(s) 80, 160, 347, 562
BshVI ATCGAT 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 343
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 2 cut(s) 26, 261
BslFI GGGAC 1 cut(s) 526
BsmFI GGGAC 1 cut(s) 526
BsnI GGCC 4 cut(s) 80, 160, 347, 562
BsoBI CYCGRG 1 cut(s) 95
Bsp1286I GDGCHC 2 cut(s) 96, 343
Bsp143I GATC 5 cut(s) 67, 370, 382, 429, 531
BspACI CCGC 3 cut(s) 474, 503, 506
BspANI GGCC 4 cut(s) 80, 160, 347, 562
BspCNI CTCAG 3 cut(s) 292, 380, 619
BspDI ATCGAT 1 cut(s) 48
BspFNI CGCG 2 cut(s) 269, 455
BspPI GGATC 1 cut(s) 75
BsrBI CCGCTC 1 cut(s) 474
BssECI CCNNGG 5 cut(s) 81, 137, 164, 417, 544
BssMI GATC 5 cut(s) 67, 370, 382, 429, 531
BssNI GRCGYC 1 cut(s) 525
BssSI CACGAG 1 cut(s) 357
BssT1I CCWWGG 5 cut(s) 81, 137, 164, 417, 544
Bst2BI CACGAG 1 cut(s) 357
BstACI GRCGYC 1 cut(s) 525
BstC8I GCNNGC 1 cut(s) 603
BstDEI CTNAG 3 cut(s) 279, 367, 606
BstF5I GGATG 2 cut(s) 66, 257
BstFNI CGCG 2 cut(s) 269, 455
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 5 cut(s) 70, 373, 385, 432, 534
BstMBI GATC 5 cut(s) 67, 370, 382, 429, 531
BstMWI GCNNNNNNNGC 4 cut(s) 275, 284, 293, 509
BstUI CGCG 2 cut(s) 269, 455
BstV1I GCAGC 3 cut(s) 9, 184, 521
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 67
BstXI CCANNNNNNTGG 1 cut(s) 210
BstYI RGATCY 1 cut(s) 67
Bsu15I ATCGAT 1 cut(s) 48
BsuRI GGCC 4 cut(s) 80, 160, 347, 562
BsuTUI ATCGAT 1 cut(s) 48
BtgZI GCGATG 3 cut(s) 311, 470, 476
BtsCI GGATG 2 cut(s) 66, 257
Cac8I GCNNGC 1 cut(s) 603
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 3 cut(s) 134, 158, 560
ClaI ATCGAT 1 cut(s) 48
CseI GACGC 3 cut(s) 258, 275, 533
CviAII CATG 1 cut(s) 538
DdeI CTNAG 3 cut(s) 279, 367, 606
DpnI GATC 5 cut(s) 69, 372, 384, 431, 533
DpnII GATC 5 cut(s) 67, 370, 382, 429, 531
DraI TTTAAA 1 cut(s) 172
DrdI GACNNNNNNGTC 1 cut(s) 421
DseDI GACNNNNNNGTC 1 cut(s) 421
EaeI YGGCCR 2 cut(s) 78, 345
Eco130I CCWWGG 5 cut(s) 81, 137, 164, 417, 544
Eco24I GRGCYC 1 cut(s) 96
Eco47I GGWCC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 95
EcoT14I CCWWGG 5 cut(s) 81, 137, 164, 417, 544
EcoT38I GRGCYC 1 cut(s) 96
ErhI CCWWGG 5 cut(s) 81, 137, 164, 417, 544
FaeI CATG 1 cut(s) 541
FaiI YATR 4 cut(s) 119, 182, 539, 565
FalI AAGNNNNNCTT 2 cut(s) 130, 162
FaqI GGGAC 1 cut(s) 526
FatI CATG 1 cut(s) 537
FauI CCCGC 1 cut(s) 467
Fnu4HI GCNGC 5 cut(s) 23, 198, 504, 507, 510
FokI GGATG 2 cut(s) 73, 244
FriOI GRGCYC 1 cut(s) 96
Fsp4HI GCNGC 5 cut(s) 23, 198, 504, 507, 510
FspBI CTAG 3 cut(s) 71, 386, 545
GlaI GCGC 1 cut(s) 226
GluI GCNGC 5 cut(s) 23, 198, 504, 507, 510
HaeIII GGCC 4 cut(s) 80, 160, 347, 562
HapII CCGG 2 cut(s) 26, 261
HgaI GACGC 3 cut(s) 258, 275, 533
HhaI GCGC 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 525
Hin1II CATG 1 cut(s) 541
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HincII GTYRAC 3 cut(s) 144, 325, 523
HindII GTYRAC 3 cut(s) 144, 325, 523
HinfI GANTC 1 cut(s) 587
HpaII CCGG 2 cut(s) 26, 261
Hpy166II GTNNAC 3 cut(s) 144, 325, 523
Hpy188I TCNGA 3 cut(s) 282, 370, 573
Hpy188III TCNNGA 1 cut(s) 188
Hpy8I GTNNAC 3 cut(s) 144, 325, 523
Hpy99I CGWCG 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 4 cut(s) 275, 284, 293, 509
HpyF3I CTNAG 3 cut(s) 279, 367, 606
Hsp92I GRCGYC 1 cut(s) 525
Hsp92II CATG 1 cut(s) 541
HspAI GCGC 1 cut(s) 225
Kzo9I GATC 5 cut(s) 67, 370, 382, 429, 531
LmnI GCTCC 2 cut(s) 205, 471
Lsp1109I GCAGC 3 cut(s) 9, 184, 521
LweI GCATC 1 cut(s) 51
MaeI CTAG 3 cut(s) 71, 386, 545
MaeIII GTNAC 3 cut(s) 308, 412, 434
MalI GATC 5 cut(s) 69, 372, 384, 431, 533
MbiI CCGCTC 1 cut(s) 474
MboI GATC 5 cut(s) 67, 370, 382, 429, 531
MboII GAAGA 3 cut(s) 65, 227, 526
MflI RGATCY 1 cut(s) 67
MhlI GDGCHC 2 cut(s) 96, 343
MlsI TGGCCA 1 cut(s) 80
MluCI AATT 2 cut(s) 151, 183
MluI ACGCGT 1 cut(s) 267
MluNI TGGCCA 1 cut(s) 80
MmeI TCCRAC 1 cut(s) 297
MnlI CCTC 4 cut(s) 115, 171, 294, 462
Mox20I TGGCCA 1 cut(s) 80
MscI TGGCCA 1 cut(s) 80
MseI TTAA 2 cut(s) 171, 634
MslI CAYNNNNRTG 1 cut(s) 317
Msp20I TGGCCA 1 cut(s) 80
MspI CCGG 2 cut(s) 26, 261
MvnI CGCG 2 cut(s) 269, 455
MwoI GCNNNNNNNGC 4 cut(s) 275, 284, 293, 509
NdeII GATC 5 cut(s) 67, 370, 382, 429, 531
NlaIII CATG 1 cut(s) 541
NmuCI GTSAC 3 cut(s) 308, 412, 434
PcsI WCGNNNNNNNCGW 2 cut(s) 36, 45
PfeI GAWTC 1 cut(s) 587
PkrI GCNGC 5 cut(s) 24, 199, 505, 508, 511
PspPI GGNCC 3 cut(s) 134, 158, 560
PsuI RGATCY 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 317
SaqAI TTAA 2 cut(s) 171, 634
SatI GCNGC 5 cut(s) 23, 198, 504, 507, 510
Sau3AI GATC 5 cut(s) 67, 370, 382, 429, 531
Sau96I GGNCC 3 cut(s) 134, 158, 560
SduI GDGCHC 2 cut(s) 96, 343
SetI ASST 7 cut(s) 136, 143, 170, 378, 391, 419, 518
SfaNI GCATC 1 cut(s) 51
SinI GGWCC 1 cut(s) 134
SmiMI CAYNNNNRTG 1 cut(s) 317
Sse9I AATT 2 cut(s) 151, 183
SsiI CCGC 3 cut(s) 474, 503, 506
SspMI CTAG 3 cut(s) 71, 386, 545
StyI CCWWGG 5 cut(s) 81, 137, 164, 417, 544
TaqI TCGA 2 cut(s) 39, 48
TasI AATT 2 cut(s) 151, 183
TauI GCSGC 2 cut(s) 506, 509
TfiI GAWTC 1 cut(s) 587
Tru1I TTAA 2 cut(s) 171, 634
Tru9I TTAA 2 cut(s) 171, 634
TseFI GTSAC 3 cut(s) 308, 412, 434
TseI GCWGC 3 cut(s) 22, 197, 509
Tsp45I GTSAC 3 cut(s) 308, 412, 434
TspDTI ATGAA 3 cut(s) 66, 462, 526
VpaK11BI GGWCC 1 cut(s) 134
XcmI CCANNNNNNNNNTGG 1 cut(s) 280
XmaJI CCTAGG 1 cut(s) 544
XspI CTAG 3 cut(s) 71, 386, 545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.