FvH4_1g23991

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000118
Physical Location & Seq
Forward (+)
15853273 .. 15855303
2031 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g23991.t1

Sequence Viewer

Length: 468 bp
ATGTCTTCTTCTGTTAATGACGCTGAAGGCATTGGGAGGCGGCAACTCAGCCTGGATGGTCTTGGGCTAGGCTTACTTATTGCGCGTTGGCTTGTTAATTCTGTATTGTGCGATAACGAGGTTTCAGGAGTTATGGCAGGTGATCAATTTGGCCAATTTGGTTTTCCTGATCCGTGCATTGGCTCGGGTGTGCATGCTCGTTATGATTTCGTCAATGAAACCATGGTAACTAGATTCTCTGATTCTCTAGTCCGAAGTTATCGGATTGCCTCAAGTTCCAAATTCCATGCCGGATCAGAGGCGGACGTCTGCACCACCCTTAAAGTGCGGACGTCCATGCGTTTGTCACGATTAAGCGCCGACAGAAGCGCTCCTCTTGCTAAGCGGGCACCAGACCTCGATTGTGACTTTCCTCTTGTCGGTGGACTCGTCGTATACCAGTTTGCAGTCGCCATTGTTCTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

16.66

Weight (kDa)

6.07

Isoelectric Point (pI)

40.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 128
AatII GACGTC 2 cut(s) 309, 335
Acc36I ACCTGC 1 cut(s) 128
AccB1I GGYRCC 1 cut(s) 388
AccI GTMKAC 1 cut(s) 435
AccII CGCG 1 cut(s) 85
AciI CCGC 4 cut(s) 40, 302, 328, 385
AclWI GGATC 2 cut(s) 164, 301
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 45
AcyI GRCGYC 2 cut(s) 306, 332
AfeI AGCGCT 1 cut(s) 370
AfiI CCNNNNNNNGG 2 cut(s) 179, 419
AjnI CCWGG 1 cut(s) 51
AjuI GAANNNNNNNTTGG 2 cut(s) 147, 179
AlwI GGATC 2 cut(s) 164, 301
Ama87I CYCGRG 1 cut(s) 184
Aor51HI AGCGCT 1 cut(s) 370
AoxI GGCC 1 cut(s) 151
ApoI RAATTY 1 cut(s) 281
AspLEI GCGC 3 cut(s) 85, 359, 371
AsuHPI GGTGA 1 cut(s) 152
AvaI CYCGRG 1 cut(s) 184
BaeGI GKGCMC 1 cut(s) 391
BalI TGGCCA 1 cut(s) 153
BanI GGYRCC 1 cut(s) 388
BccI CCATC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 53
BclI TGATCA 1 cut(s) 142
BfaI CTAG 3 cut(s) 68, 231, 248
BfoI RGCGCY 2 cut(s) 360, 372
BfuAI ACCTGC 1 cut(s) 128
BisI GCNGC 1 cut(s) 41
BlpI GCTNAGC 1 cut(s) 381
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 184
BmiI GGNNCC 1 cut(s) 390
BmrFI CCNGG 1 cut(s) 53
Bpu1102I GCTNAGC 1 cut(s) 381
BpuEI CTTGAG 1 cut(s) 256
BsaHI GRCGYC 2 cut(s) 306, 332
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 2 cut(s) 179, 419
Bse1I ACTGG 1 cut(s) 439
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 61
BseLI CCNNNNNNNGG 2 cut(s) 179, 419
BseMII CTCAG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 1 cut(s) 363
BseSI GKGCMC 1 cut(s) 391
BsgI GTGCAG 1 cut(s) 295
Bsh1236I CGCG 1 cut(s) 85
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 388
BsiHKCI CYCGRG 1 cut(s) 184
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 2 cut(s) 179, 419
BsnI GGCC 1 cut(s) 153
BsoBI CYCGRG 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 391
Bsp143I GATC 3 cut(s) 142, 169, 293
Bsp1720I GCTNAGC 1 cut(s) 381
Bsp19I CCATGG 1 cut(s) 222
BspACI CCGC 4 cut(s) 40, 302, 328, 385
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 60
BspFNI CGCG 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 390
BspMI ACCTGC 1 cut(s) 128
BspPI GGATC 2 cut(s) 164, 301
BspT107I GGYRCC 1 cut(s) 388
BsrI ACTGG 1 cut(s) 439
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 3 cut(s) 142, 169, 293
BssNAI GTATAC 1 cut(s) 436
BssNI GRCGYC 2 cut(s) 306, 332
BssT1I CCWWGG 1 cut(s) 222
Bst1107I GTATAC 1 cut(s) 436
Bst2UI CCWGG 1 cut(s) 53
BstACI GRCGYC 2 cut(s) 306, 332
BstC8I GCNNGC 2 cut(s) 195, 387
BstDEI CTNAG 2 cut(s) 47, 381
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 61
BstFNI CGCG 1 cut(s) 85
BstH2I RGCGCY 2 cut(s) 360, 372
BstHHI GCGC 3 cut(s) 85, 359, 371
BstKTI GATC 3 cut(s) 145, 172, 296
BstMBI GATC 3 cut(s) 142, 169, 293
BstMWI GCNNNNNNNGC 2 cut(s) 377, 386
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 51
BstSLI GKGCMC 1 cut(s) 391
BstUI CGCG 1 cut(s) 85
BstZ17I GTATAC 1 cut(s) 436
BsuRI GGCC 1 cut(s) 153
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 61
BveI ACCTGC 1 cut(s) 128
Cac8I GCNNGC 2 cut(s) 195, 387
CfoI GCGC 3 cut(s) 85, 359, 371
CseI GACGC 1 cut(s) 29
CviAII CATG 4 cut(s) 194, 223, 287, 337
CviJI RGCY 6 cut(s) 51, 67, 72, 91, 153, 183
CviKI_1 RGCY 6 cut(s) 51, 67, 72, 91, 153, 183
DdeI CTNAG 2 cut(s) 47, 381
DpnI GATC 3 cut(s) 144, 171, 295
DpnII GATC 3 cut(s) 142, 169, 293
EaeI YGGCCR 1 cut(s) 151
EciI GGCGGA 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 222
Eco47III AGCGCT 1 cut(s) 370
Eco57I CTGAAG 1 cut(s) 45
Eco88I CYCGRG 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 222
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 4 cut(s) 197, 226, 290, 340
FaiI YATR 7 cut(s) 134, 195, 204, 224, 288, 338, 436
FatI CATG 4 cut(s) 193, 222, 286, 336
FauI CCCGC 1 cut(s) 378
FbaI TGATCA 1 cut(s) 142
FblI GTMKAC 1 cut(s) 435
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 3 cut(s) 68, 231, 248
GlaI GCGC 3 cut(s) 84, 358, 370
GluI GCNGC 1 cut(s) 41
HaeII RGCGCY 2 cut(s) 360, 372
HaeIII GGCC 1 cut(s) 153
HapII CCGG 1 cut(s) 291
HgaI GACGC 1 cut(s) 29
HhaI GCGC 3 cut(s) 85, 359, 371
Hin1I GRCGYC 2 cut(s) 306, 332
Hin1II CATG 4 cut(s) 197, 226, 290, 340
Hin6I GCGC 3 cut(s) 83, 357, 369
HinP1I GCGC 3 cut(s) 83, 357, 369
HinfI GANTC 3 cut(s) 234, 242, 426
HpaII CCGG 1 cut(s) 291
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 425, 436
Hpy188I TCNGA 4 cut(s) 241, 254, 264, 298
Hpy188III TCNNGA 3 cut(s) 126, 167, 348
Hpy8I GTNNAC 2 cut(s) 425, 436
Hpy99I CGWCG 1 cut(s) 434
HpyAV CCTTC 1 cut(s) 20
HpyCH4IV ACGT 2 cut(s) 306, 332
HpyCH4V TGCA 4 cut(s) 177, 193, 312, 446
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 386
HpyF3I CTNAG 2 cut(s) 47, 381
HpySE526I ACGT 2 cut(s) 306, 332
Hsp92I GRCGYC 2 cut(s) 306, 332
Hsp92II CATG 4 cut(s) 197, 226, 290, 340
HspAI GCGC 3 cut(s) 83, 357, 369
Ksp22I TGATCA 1 cut(s) 142
Kzo9I GATC 3 cut(s) 142, 169, 293
LmnI GCTCC 1 cut(s) 376
LpnPI CCDG 8 cut(s) 38, 65, 111, 123, 180, 304, 405, 452
MaeI CTAG 3 cut(s) 68, 231, 248
MaeII ACGT 2 cut(s) 306, 332
MaeIII GTNAC 3 cut(s) 226, 345, 404
MalI GATC 3 cut(s) 144, 171, 295
MboI GATC 3 cut(s) 142, 169, 293
MhlI GDGCHC 1 cut(s) 391
MlsI TGGCCA 1 cut(s) 153
MluCI AATT 4 cut(s) 97, 146, 155, 281
MluNI TGGCCA 1 cut(s) 153
MlyI GAGTC 1 cut(s) 420
MnlI CCTC 7 cut(s) 30, 112, 280, 292, 384, 407, 423
Mox20I TGGCCA 1 cut(s) 153
MscI TGGCCA 1 cut(s) 153
MseI TTAA 4 cut(s) 15, 96, 321, 353
Msp20I TGGCCA 1 cut(s) 153
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 1 cut(s) 85
MwoI GCNNNNNNNGC 2 cut(s) 377, 386
NcoI CCATGG 1 cut(s) 222
NdeII GATC 3 cut(s) 142, 169, 293
NlaIII CATG 4 cut(s) 197, 226, 290, 340
NlaIV GGNNCC 1 cut(s) 390
NmuCI GTSAC 2 cut(s) 345, 404
NspI RCATGY 1 cut(s) 197
PaeI GCATGC 1 cut(s) 197
PaqCI CACCTGC 1 cut(s) 128
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PfeI GAWTC 2 cut(s) 234, 242
PkrI GCNGC 1 cut(s) 42
PleI GAGTC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 1 cut(s) 390
SaqAI TTAA 4 cut(s) 15, 96, 321, 353
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 3 cut(s) 142, 169, 293
SchI GAGTC 1 cut(s) 420
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 1 cut(s) 391
SetI ASST 5 cut(s) 123, 142, 309, 335, 399
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
SphI GCATGC 1 cut(s) 197
Sse9I AATT 4 cut(s) 97, 146, 155, 281
SsiI CCGC 4 cut(s) 40, 302, 328, 385
SspMI CTAG 3 cut(s) 68, 231, 248
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 1 cut(s) 222
TaiI ACGT 2 cut(s) 309, 335
TaqI TCGA 1 cut(s) 399
TasI AATT 4 cut(s) 97, 146, 155, 281
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 2 cut(s) 234, 242
Tru1I TTAA 4 cut(s) 15, 96, 321, 353
Tru9I TTAA 4 cut(s) 15, 96, 321, 353
TseFI GTSAC 2 cut(s) 345, 404
Tsp45I GTSAC 2 cut(s) 345, 404
TspDTI ATGAA 1 cut(s) 231
TspGWI ACGGA 1 cut(s) 162
XapI RAATTY 1 cut(s) 281
XceI RCATGY 1 cut(s) 197
XmiI GTMKAC 1 cut(s) 435
XspI CTAG 3 cut(s) 68, 231, 248
ZraI GACGTC 2 cut(s) 307, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.