FvH4_3g36982

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Reverse (-)
31692366 .. 31693189
824 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36982.t1

Sequence Viewer

Length: 228 bp
ATGTCACAAAGGAAGAAATCTCTTCCGGCTCGCCAGGGCGGCCTAAAGTCCGGATCAGAGACGGACGTCCGCACGCCCTTAAAGTGCGGACGTCCCTCCGTTCTCCACCGGACGGCTCCGACGACGGCGCGCCTCCACTCTAGTGGCCTCCAGCAGCGTCTACGATTATTTTCCCTCCTCGGCGAGTCCGTCGAATTCCAGTTTTCCGGCGAGATCGATTTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.3

Weight (kDa)

10.84

Isoelectric Point (pI)

48.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 69, 94
AccI GTMKAC 1 cut(s) 160
AccII CGCG 1 cut(s) 130
AccIII TCCGGA 1 cut(s) 50
AciI CCGC 3 cut(s) 39, 70, 87
AclWI GGATC 1 cut(s) 61
AcsI RAATTY 1 cut(s) 194
AcyI GRCGYC 2 cut(s) 66, 91
AfiI CCNNNNNNNGG 1 cut(s) 112
AjnI CCWGG 1 cut(s) 33
AleI CACNNNNGTG 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 1 cut(s) 61
Aor13HI TCCGGA 1 cut(s) 50
AoxI GGCC 2 cut(s) 40, 145
ApeKI GCWGC 1 cut(s) 154
ApoI RAATTY 1 cut(s) 194
AscI GGCGCGCC 1 cut(s) 128
AspLEI GCGC 2 cut(s) 130, 132
BbvI GCAGC 1 cut(s) 166
BceAI ACGGC 2 cut(s) 129, 141
BciT130I CCWGG 1 cut(s) 35
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 141
BglI GCCNNNNNGGC 1 cut(s) 39
BisI GCNGC 2 cut(s) 40, 155
BlsI GCNGC 2 cut(s) 41, 156
Bme1390I CCNGG 1 cut(s) 35
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 35
BoxI GACNNNNGTC 1 cut(s) 65
BpmI CTGGAG 1 cut(s) 134
Bsa29I ATCGAT 1 cut(s) 216
BsaHI GRCGYC 2 cut(s) 66, 91
BsaJI CCNNGG 2 cut(s) 34, 178
BsaWI WCCGGW 2 cut(s) 50, 108
Bsc4I CCNNNNNNNGG 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 199
BseAI TCCGGA 1 cut(s) 50
BseBI CCWGG 1 cut(s) 35
BseCI ATCGAT 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 34, 178
BseLI CCNNNNNNNGG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 199
BsePI GCGCGC 1 cut(s) 128
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 1 cut(s) 166
Bsh1236I CGCG 1 cut(s) 130
BshFI GGCC 2 cut(s) 42, 147
BshVI ATCGAT 1 cut(s) 216
BsiSI CCGG 4 cut(s) 26, 51, 109, 207
BslFI GGGAC 1 cut(s) 78
BslI CCNNNNNNNGG 1 cut(s) 112
BsmAI GTCTC 1 cut(s) 53
BsmBI CGTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 2 cut(s) 42, 147
Bsp13I TCCGGA 1 cut(s) 50
Bsp143I GATC 2 cut(s) 53, 213
BspACI CCGC 3 cut(s) 39, 70, 87
BspANI GGCC 2 cut(s) 42, 147
BspDI ATCGAT 1 cut(s) 216
BspEI TCCGGA 1 cut(s) 50
BspFNI CGCG 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 117
BspPI GGATC 1 cut(s) 61
BsrI ACTGG 1 cut(s) 199
BssECI CCNNGG 2 cut(s) 34, 178
BssHII GCGCGC 1 cut(s) 128
BssMI GATC 2 cut(s) 53, 213
BssNI GRCGYC 2 cut(s) 66, 91
Bst2UI CCWGG 1 cut(s) 35
Bst6I CTCTTC 1 cut(s) 27
BstACI GRCGYC 2 cut(s) 66, 91
BstC8I GCNNGC 3 cut(s) 31, 74, 130
BstFNI CGCG 1 cut(s) 130
BstHHI GCGC 2 cut(s) 130, 132
BstKTI GATC 2 cut(s) 56, 216
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 2 cut(s) 53, 213
BstMWI GCNNNNNNNGC 1 cut(s) 39
BstNI CCWGG 1 cut(s) 35
BstPAI GACNNNNGTC 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 33
BstUI CGCG 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 143
Bsu15I ATCGAT 1 cut(s) 216
BsuRI GGCC 2 cut(s) 42, 147
BsuTUI ATCGAT 1 cut(s) 216
Cac8I GCNNGC 3 cut(s) 31, 74, 130
CfoI GCGC 2 cut(s) 130, 132
ClaI ATCGAT 1 cut(s) 216
CseI GACGC 1 cut(s) 146
CviJI RGCY 4 cut(s) 29, 42, 116, 147
CviKI_1 RGCY 4 cut(s) 29, 42, 116, 147
DpnI GATC 2 cut(s) 55, 215
DpnII GATC 2 cut(s) 53, 213
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
EcoRI GAATTC 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 33
Esp3I CGTCTC 1 cut(s) 53
FaqI GGGAC 1 cut(s) 78
FblI GTMKAC 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 40, 155
Fsp4HI GCNGC 2 cut(s) 40, 155
FspBI CTAG 1 cut(s) 141
GlaI GCGC 2 cut(s) 129, 131
GluI GCNGC 2 cut(s) 40, 155
GsuI CTGGAG 1 cut(s) 134
HaeIII GGCC 2 cut(s) 42, 147
HapII CCGG 4 cut(s) 26, 51, 109, 207
HgaI GACGC 1 cut(s) 146
HhaI GCGC 2 cut(s) 130, 132
Hin1I GRCGYC 2 cut(s) 66, 91
Hin6I GCGC 2 cut(s) 128, 130
HinP1I GCGC 2 cut(s) 128, 130
HinfI GANTC 1 cut(s) 185
HpaII CCGG 4 cut(s) 26, 51, 109, 207
Hpy166II GTNNAC 1 cut(s) 161
Hpy188I TCNGA 2 cut(s) 58, 120
Hpy188III TCNNGA 1 cut(s) 51
Hpy8I GTNNAC 1 cut(s) 161
Hpy99I CGWCG 3 cut(s) 124, 127, 194
HpyCH4IV ACGT 2 cut(s) 66, 91
HpyF10VI GCNNNNNNNGC 1 cut(s) 39
HpySE526I ACGT 2 cut(s) 66, 91
Hsp92I GRCGYC 2 cut(s) 66, 91
HspAI GCGC 2 cut(s) 128, 130
Kpn2I TCCGGA 1 cut(s) 50
Kzo9I GATC 2 cut(s) 53, 213
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 8 cut(s) 20, 39, 47, 64, 122, 164, 212, 220
Lsp1109I GCAGC 1 cut(s) 166
MaeI CTAG 1 cut(s) 141
MaeII ACGT 2 cut(s) 66, 91
MaeIII GTNAC 1 cut(s) 3
MalI GATC 2 cut(s) 55, 215
MboI GATC 2 cut(s) 53, 213
MboII GAAGA 2 cut(s) 14, 25
MluCI AATT 1 cut(s) 194
MlyI GAGTC 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 5 cut(s) 106, 143, 158, 185, 188
MroI TCCGGA 1 cut(s) 50
MseI TTAA 1 cut(s) 80
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 4 cut(s) 26, 51, 109, 207
MspR9I CCNGG 1 cut(s) 35
MvaI CCWGG 1 cut(s) 35
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 1 cut(s) 39
NdeII GATC 2 cut(s) 53, 213
NlaIV GGNNCC 1 cut(s) 117
NmeAIII GCCGAG 1 cut(s) 159
NmuCI GTSAC 1 cut(s) 3
OliI CACNNNNGTG 1 cut(s) 141
PalAI GGCGCGCC 1 cut(s) 128
PauI GCGCGC 1 cut(s) 128
PcsI WCGNNNNNNNCGW 2 cut(s) 119, 186
PkrI GCNGC 2 cut(s) 41, 156
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
PshAI GACNNNNGTC 1 cut(s) 65
Psp6I CCWGG 1 cut(s) 33
PspGI CCWGG 1 cut(s) 33
PspN4I GGNNCC 1 cut(s) 117
PteI GCGCGC 1 cut(s) 128
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 80
SatI GCNGC 2 cut(s) 40, 155
Sau3AI GATC 2 cut(s) 53, 213
SchI GAGTC 1 cut(s) 194
ScrFI CCNGG 1 cut(s) 35
SetI ASST 2 cut(s) 69, 94
SgsI GGCGCGCC 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 1 cut(s) 194
SsiI CCGC 3 cut(s) 39, 70, 87
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 1 cut(s) 33
TaiI ACGT 2 cut(s) 69, 94
TaqI TCGA 2 cut(s) 192, 216
TasI AATT 1 cut(s) 194
TauI GCSGC 1 cut(s) 42
Tru1I TTAA 1 cut(s) 80
Tru9I TTAA 1 cut(s) 80
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 1 cut(s) 154
Tsp45I GTSAC 1 cut(s) 3
TspGWI ACGGA 3 cut(s) 77, 88, 178
XapI RAATTY 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 160
XspI CTAG 1 cut(s) 141
ZraI GACGTC 2 cut(s) 67, 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.