FvH4_1g25552

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000118
Physical Location & Seq
Reverse (-)
17337567 .. 17338750
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g25552.t1

Sequence Viewer

Length: 552 bp
ATGCAGGGAATAATTTTCGCAGAAAGAGAGAGATATATATATATAGGCCGGATATGGAGCGGACGTCCACACACTCGGCTTAAAGTGCGGACGTCCGTCCGTTCTCCACCCTCCGGCGCCGGCGACGACGCGCCTCCACCCCAGAAGACTCCACCAGCGTCCCCGATCACTTTCCCTCCCCGGCGAGTCCATTCTTTTCCAGTTTTCCGGCAAGATCACCCAAAACTTCAAACAAGATCAATCTCGCCGGAAATTGGAAAAGAACGGACTCGCCGGGGAGGGAAAGTGGTCGGGGACACTACTGGAAGGCCAGATCAGGAGTGGACGTCCGCACCGGCCTTAAAGTGCGGACGTCCGTCCGTTCTCCACCCTCCGGCGTCGGCGACGGCGCACCTCCACCCCGGAAGACTCCAGCAGCGTCCCCGACCACTTTCCCTCCTCGGACTCGCCGGGGAGGGAAAGTGGTCGGGGACGCTGTTAGAGTCTTCTGGGGTGGAGGCGAGCCGGCACCGGCGCCGGAGGGTGGAGAACGGGCAGACGTCTGCACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

20.19

Weight (kDa)

11.55

Isoelectric Point (pI)

62.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 5 cut(s) 67, 95, 329, 355, 542
AccB1I GGYRCC 3 cut(s) 116, 507, 513
AccBSI CCGCTC 1 cut(s) 60
AccII CGCG 1 cut(s) 131
AciI CCGC 4 cut(s) 60, 88, 330, 348
AcyI GRCGYC 8 cut(s) 64, 92, 117, 326, 352, 377, 514, 539
AfiI CCNNNNNNNGG 4 cut(s) 113, 254, 373, 523
AgsI TTSAA 1 cut(s) 230
AoxI GGCC 3 cut(s) 46, 308, 336
ApeKI GCWGC 1 cut(s) 415
AspLEI GCGC 4 cut(s) 119, 133, 391, 516
AsuC2I CCSGG 4 cut(s) 181, 275, 402, 451
AsuHPI GGTGA 1 cut(s) 209
BanI GGYRCC 3 cut(s) 116, 507, 513
BbsI GAAGAC 3 cut(s) 152, 412, 477
BbvI GCAGC 1 cut(s) 427
BceAI ACGGC 1 cut(s) 402
BcnI CCSGG 4 cut(s) 181, 275, 402, 451
BfoI RGCGCY 2 cut(s) 120, 517
BisI GCNGC 1 cut(s) 416
BlsI GCNGC 1 cut(s) 417
Bme1390I CCNGG 4 cut(s) 181, 275, 402, 451
BmiI GGNNCC 3 cut(s) 118, 509, 515
BmrFI CCNGG 4 cut(s) 181, 275, 402, 451
BoxI GACNNNNGTC 2 cut(s) 95, 355
BpiI GAAGAC 3 cut(s) 152, 412, 477
BpmI CTGGAG 1 cut(s) 395
BpuMI CCSGG 4 cut(s) 181, 275, 402, 451
BsaHI GRCGYC 8 cut(s) 64, 92, 117, 326, 352, 377, 514, 539
BsaJI CCNNGG 5 cut(s) 179, 274, 400, 439, 450
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 254, 373, 523
Bse118I RCCGGY 4 cut(s) 119, 334, 504, 510
Bse1I ACTGG 2 cut(s) 200, 307
BseDI CCNNGG 5 cut(s) 179, 274, 400, 439, 450
BseLI CCNNNNNNNGG 4 cut(s) 113, 254, 373, 523
BseNI ACTGG 2 cut(s) 200, 307
BseRI GAGGAG 1 cut(s) 428
BseXI GCAGC 1 cut(s) 427
BsgI GTGCAG 1 cut(s) 528
Bsh1236I CGCG 1 cut(s) 131
BshFI GGCC 3 cut(s) 48, 310, 338
BshNI GGYRCC 3 cut(s) 116, 507, 513
BslFI GGGAC 4 cut(s) 145, 308, 405, 484
BslI CCNNNNNNNGG 4 cut(s) 113, 254, 373, 523
BsmFI GGGAC 4 cut(s) 145, 308, 405, 484
BsnI GGCC 3 cut(s) 48, 310, 338
Bsp143I GATC 4 cut(s) 165, 214, 236, 313
BspACI CCGC 4 cut(s) 60, 88, 330, 348
BspANI GGCC 3 cut(s) 48, 310, 338
BspFNI CGCG 1 cut(s) 131
BspLI GGNNCC 3 cut(s) 118, 509, 515
BspT107I GGYRCC 3 cut(s) 116, 507, 513
BsrBI CCGCTC 1 cut(s) 60
BsrFI RCCGGY 4 cut(s) 119, 334, 504, 510
BsrI ACTGG 2 cut(s) 200, 307
BssAI RCCGGY 4 cut(s) 119, 334, 504, 510
BssECI CCNNGG 5 cut(s) 179, 274, 400, 439, 450
BssMI GATC 4 cut(s) 165, 214, 236, 313
BssNI GRCGYC 8 cut(s) 64, 92, 117, 326, 352, 377, 514, 539
BstACI GRCGYC 8 cut(s) 64, 92, 117, 326, 352, 377, 514, 539
BstC8I GCNNGC 3 cut(s) 121, 502, 506
BstFNI CGCG 1 cut(s) 131
BstH2I RGCGCY 2 cut(s) 120, 517
BstHHI GCGC 4 cut(s) 119, 133, 391, 516
BstKTI GATC 4 cut(s) 168, 217, 239, 316
BstMBI GATC 4 cut(s) 165, 214, 236, 313
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstPAI GACNNNNGTC 2 cut(s) 95, 355
BstSCI CCNGG 4 cut(s) 179, 273, 400, 449
BstUI CGCG 1 cut(s) 131
BstV1I GCAGC 1 cut(s) 427
BstV2I GAAGAC 3 cut(s) 152, 412, 477
BsuRI GGCC 3 cut(s) 48, 310, 338
Cac8I GCNNGC 3 cut(s) 121, 502, 506
CfoI GCGC 4 cut(s) 119, 133, 391, 516
Cfr10I RCCGGY 4 cut(s) 119, 334, 504, 510
CseI GACGC 5 cut(s) 137, 147, 366, 407, 481
CviJI RGCY 5 cut(s) 48, 79, 310, 338, 504
CviKI_1 RGCY 5 cut(s) 48, 79, 310, 338, 504
DinI GGCGCC 2 cut(s) 118, 515
DpnI GATC 4 cut(s) 167, 216, 238, 315
DpnII GATC 4 cut(s) 165, 214, 236, 313
EgeI GGCGCC 2 cut(s) 118, 515
EheI GGCGCC 2 cut(s) 118, 515
FaiI YATR 6 cut(s) 36, 38, 40, 42, 44, 55
FaqI GGGAC 4 cut(s) 145, 308, 405, 484
Fnu4HI GCNGC 1 cut(s) 416
Fsp4HI GCNGC 1 cut(s) 416
GlaI GCGC 4 cut(s) 118, 132, 390, 515
GluI GCNGC 1 cut(s) 416
GsuI CTGGAG 1 cut(s) 395
HaeII RGCGCY 2 cut(s) 120, 517
HaeIII GGCC 3 cut(s) 48, 310, 338
HgaI GACGC 5 cut(s) 137, 147, 366, 407, 481
HhaI GCGC 4 cut(s) 119, 133, 391, 516
Hin1I GRCGYC 8 cut(s) 64, 92, 117, 326, 352, 377, 514, 539
Hin6I GCGC 4 cut(s) 117, 131, 389, 514
HinP1I GCGC 4 cut(s) 117, 131, 389, 514
HinfI GANTC 6 cut(s) 148, 186, 268, 408, 444, 482
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 2 cut(s) 68, 324
Hpy188I TCNGA 1 cut(s) 443
Hpy188III TCNNGA 1 cut(s) 317
Hpy8I GTNNAC 2 cut(s) 68, 324
Hpy99I CGWCG 4 cut(s) 128, 131, 382, 388
HpyAV CCTTC 1 cut(s) 300
HpyCH4IV ACGT 5 cut(s) 64, 92, 326, 352, 539
HpyCH4V TGCA 2 cut(s) 4, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpySE526I ACGT 5 cut(s) 64, 92, 326, 352, 539
Hsp92I GRCGYC 8 cut(s) 64, 92, 117, 326, 352, 377, 514, 539
HspAI GCGC 4 cut(s) 117, 131, 389, 514
KasI GGCGCC 2 cut(s) 116, 513
KroI GCCGGC 2 cut(s) 119, 504
KroNI GCCGGC 2 cut(s) 121, 506
Kzo9I GATC 4 cut(s) 165, 214, 236, 313
LmnI GCTCC 1 cut(s) 57
Lsp1109I GCAGC 1 cut(s) 427
MaeII ACGT 5 cut(s) 64, 92, 326, 352, 539
MalI GATC 4 cut(s) 167, 216, 238, 315
MbiI CCGCTC 1 cut(s) 60
MboI GATC 4 cut(s) 165, 214, 236, 313
MboII GAAGA 3 cut(s) 157, 417, 477
MluCI AATT 2 cut(s) 12, 252
Mly113I GGCGCC 2 cut(s) 117, 514
MlyI GAGTC 6 cut(s) 142, 195, 262, 402, 438, 491
MreI CGCCGGCG 1 cut(s) 119
MroNI GCCGGC 2 cut(s) 119, 504
MseI TTAA 3 cut(s) 81, 341, 550
MspR9I CCNGG 4 cut(s) 181, 275, 402, 451
MvnI CGCG 1 cut(s) 131
MwoI GCNNNNNNNGC 1 cut(s) 85
NaeI GCCGGC 2 cut(s) 121, 506
NarI GGCGCC 2 cut(s) 117, 514
NciI CCSGG 4 cut(s) 181, 275, 402, 451
NdeII GATC 4 cut(s) 165, 214, 236, 313
NgoMIV GCCGGC 2 cut(s) 119, 504
NlaIV GGNNCC 3 cut(s) 118, 509, 515
NmeAIII GCCGAG 1 cut(s) 55
PdiI GCCGGC 2 cut(s) 121, 506
PkrI GCNGC 1 cut(s) 417
PleI GAGTC 6 cut(s) 142, 194, 262, 402, 438, 490
PluTI GGCGCC 2 cut(s) 120, 517
PpsI GAGTC 6 cut(s) 142, 194, 262, 402, 438, 490
PshAI GACNNNNGTC 2 cut(s) 95, 355
PspN4I GGNNCC 3 cut(s) 118, 509, 515
SaqAI TTAA 3 cut(s) 81, 341, 550
SatI GCNGC 1 cut(s) 416
Sau3AI GATC 4 cut(s) 165, 214, 236, 313
SchI GAGTC 6 cut(s) 142, 195, 262, 402, 438, 491
ScrFI CCNGG 4 cut(s) 181, 275, 402, 451
SetI ASST 6 cut(s) 67, 95, 329, 355, 396, 542
SfoI GGCGCC 2 cut(s) 118, 515
SgrAI CRCCGGYG 2 cut(s) 119, 510
Sse9I AATT 2 cut(s) 12, 252
SsiI CCGC 4 cut(s) 60, 88, 330, 348
SspDI GGCGCC 2 cut(s) 116, 513
StyD4I CCNGG 4 cut(s) 179, 273, 400, 449
TaiI ACGT 5 cut(s) 67, 95, 329, 355, 542
TasI AATT 2 cut(s) 12, 252
Tru1I TTAA 3 cut(s) 81, 341, 550
Tru9I TTAA 3 cut(s) 81, 341, 550
TseI GCWGC 1 cut(s) 415
TspGWI ACGGA 5 cut(s) 85, 89, 280, 345, 349
XcmI CCANNNNNNNNNTGG 1 cut(s) 318
ZraI GACGTC 5 cut(s) 65, 93, 327, 353, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.