FvH4_4g31521

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000118
Physical Location & Seq
Forward (+)
30619612 .. 30620958
1347 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g31521.t1

Sequence Viewer

Length: 324 bp
ATGGACGCGTGCGTGCAGAGCTACCCTTATAAGTACTACTACAGGTCGTACGTATATGTATATGTGGTTCTTGTTCAGTCGTCGAGTCAACCTTCTGTCTCTGCTACGGACGTCCGCACCGTTTTAGGGTGTGGATTTTTGTTCGTTCGCCACCGAGGAAAATCACCCAAAACTTCAAACTTGGGTGATCTGGCCGGAAAATTGGAATTCGGCGGACTCACCGGGGATGGAAAGTGGTCGGGGAAGCTGCTGGAGTCGGCTGGGGTGGAGGCGCGCCCTCGCCGGTGCCGTATGGTGGCGAATGGACGAAAATCCGCACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

11.75

Weight (kDa)

9.75

Isoelectric Point (pI)

44.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 30
AatII GACGTC 1 cut(s) 114
AccB1I GGYRCC 1 cut(s) 285
AccII CGCG 2 cut(s) 8, 274
AciI CCGC 3 cut(s) 115, 213, 315
AcoI YGGCCR 1 cut(s) 192
AcsI RAATTY 1 cut(s) 206
AcyI GRCGYC 1 cut(s) 111
AfaI GTAC 2 cut(s) 35, 50
AfiI CCNNNNNNNGG 2 cut(s) 126, 295
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 1 cut(s) 177
AluBI AGCT 2 cut(s) 21, 247
AluI AGCT 2 cut(s) 21, 247
Alw26I GTCTC 1 cut(s) 103
AoxI GGCC 1 cut(s) 192
ApeKI GCWGC 1 cut(s) 247
ApoI RAATTY 1 cut(s) 206
AscI GGCGCGCC 1 cut(s) 272
AspLEI GCGC 2 cut(s) 274, 276
AsuC2I CCSGG 1 cut(s) 223
AsuHPI GGTGA 3 cut(s) 156, 197, 211
BanI GGYRCC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 234
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 273
BcnI CCSGG 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 103
BfmI CTRYAG 1 cut(s) 40
BisI GCNGC 1 cut(s) 248
BlsI GCNGC 1 cut(s) 249
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 287
BmrFI CCNGG 1 cut(s) 223
BpmI CTGGAG 1 cut(s) 272
BpuMI CCSGG 1 cut(s) 223
BsaAI YACGTR 1 cut(s) 52
BsaHI GRCGYC 1 cut(s) 111
BsaJI CCNNGG 2 cut(s) 154, 222
Bsc4I CCNNNNNNNGG 2 cut(s) 126, 295
Bse118I RCCGGY 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 154, 222
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 2 cut(s) 126, 295
BsePI GCGCGC 1 cut(s) 272
BseXI GCAGC 1 cut(s) 234
BseYI CCCAGC 1 cut(s) 260
BsgI GTGCAG 1 cut(s) 35
Bsh1236I CGCG 2 cut(s) 8, 274
BshFI GGCC 1 cut(s) 194
BshNI GGYRCC 1 cut(s) 285
BsiSI CCGG 3 cut(s) 195, 222, 283
BsiWI CGTACG 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 126, 295
BsmAI GTCTC 1 cut(s) 103
BsnI GGCC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 3 cut(s) 115, 213, 315
BspANI GGCC 1 cut(s) 194
BspFNI CGCG 2 cut(s) 8, 274
BspLI GGNNCC 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 285
BsrFI RCCGGY 1 cut(s) 282
BssAI RCCGGY 1 cut(s) 282
BssECI CCNNGG 2 cut(s) 154, 222
BssHII GCGCGC 1 cut(s) 272
BssMI GATC 1 cut(s) 187
BssNI GRCGYC 1 cut(s) 111
Bst4CI ACNGT 2 cut(s) 121, 321
BstACI GRCGYC 1 cut(s) 111
BstBAI YACGTR 1 cut(s) 52
BstC8I GCNNGC 3 cut(s) 10, 14, 274
BstF5I GGATG 1 cut(s) 232
BstFNI CGCG 2 cut(s) 8, 274
BstHHI GCGC 2 cut(s) 274, 276
BstKTI GATC 1 cut(s) 190
BstMAI GTCTC 1 cut(s) 103
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 221
BstSFI CTRYAG 1 cut(s) 40
BstSNI TACGTA 1 cut(s) 52
BstUI CGCG 2 cut(s) 8, 274
BstV1I GCAGC 1 cut(s) 234
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 232
Cac8I GCNNGC 3 cut(s) 10, 14, 274
CfoI GCGC 2 cut(s) 274, 276
Cfr10I RCCGGY 1 cut(s) 282
CseI GACGC 1 cut(s) 14
Csp6I GTAC 2 cut(s) 34, 49
CviJI RGCY 4 cut(s) 21, 194, 247, 260
CviKI_1 RGCY 4 cut(s) 21, 194, 247, 260
CviQI GTAC 2 cut(s) 34, 49
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 192
EciI GGCGGA 1 cut(s) 228
Eco105I TACGTA 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 206
FaiI YATR 6 cut(s) 30, 55, 57, 61, 63, 293
Fnu4HI GCNGC 1 cut(s) 248
FokI GGATG 1 cut(s) 239
Fsp4HI GCNGC 1 cut(s) 248
GlaI GCGC 2 cut(s) 273, 275
GluI GCNGC 1 cut(s) 248
GsaI CCCAGC 1 cut(s) 264
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 1 cut(s) 194
HapII CCGG 3 cut(s) 195, 222, 283
HgaI GACGC 1 cut(s) 14
HhaI GCGC 2 cut(s) 274, 276
Hin1I GRCGYC 1 cut(s) 111
Hin6I GCGC 2 cut(s) 272, 274
HinP1I GCGC 2 cut(s) 272, 274
HincII GTYRAC 1 cut(s) 89
HindII GTYRAC 1 cut(s) 89
HinfI GANTC 3 cut(s) 85, 216, 254
HpaII CCGG 3 cut(s) 195, 222, 283
HphI GGTGA 3 cut(s) 156, 197, 211
Hpy166II GTNNAC 1 cut(s) 89
Hpy8I GTNNAC 1 cut(s) 89
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 2 cut(s) 121, 321
HpyCH4IV ACGT 2 cut(s) 51, 111
HpyCH4V TGCA 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
HpySE526I ACGT 2 cut(s) 51, 111
Hsp92I GRCGYC 1 cut(s) 111
HspAI GCGC 2 cut(s) 272, 274
Kzo9I GATC 1 cut(s) 187
LpnPI CCDG 7 cut(s) 28, 176, 208, 235, 236, 246, 296
Lsp1109I GCAGC 1 cut(s) 234
MaeII ACGT 2 cut(s) 51, 111
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MluCI AATT 2 cut(s) 200, 206
MluI ACGCGT 1 cut(s) 6
MlyI GAGTC 3 cut(s) 94, 210, 263
MnlI CCTC 3 cut(s) 149, 262, 288
MspI CCGG 3 cut(s) 195, 222, 283
MspR9I CCNGG 1 cut(s) 223
MvnI CGCG 2 cut(s) 8, 274
MwoI GCNNNNNNNGC 1 cut(s) 18
NciI CCSGG 1 cut(s) 223
NdeII GATC 1 cut(s) 187
NlaIV GGNNCC 1 cut(s) 287
PalAI GGCGCGCC 1 cut(s) 272
PauI GCGCGC 1 cut(s) 272
PcsI WCGNNNNNNNCGW 2 cut(s) 117, 286
Pfl23II CGTACG 1 cut(s) 48
PkrI GCNGC 1 cut(s) 249
PleI GAGTC 3 cut(s) 93, 210, 262
PpsI GAGTC 3 cut(s) 93, 210, 262
Ppu21I YACGTR 1 cut(s) 52
PsiI TTATAA 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 260
PspLI CGTACG 1 cut(s) 48
PspN4I GGNNCC 1 cut(s) 287
PsrI GAACNNNNNNTAC 2 cut(s) 51, 83
PteI GCGCGC 1 cut(s) 272
RsaI GTAC 2 cut(s) 35, 50
RsaNI GTAC 2 cut(s) 34, 49
SatI GCNGC 1 cut(s) 248
Sau3AI GATC 1 cut(s) 187
ScaI AGTACT 1 cut(s) 35
SchI GAGTC 3 cut(s) 94, 210, 263
ScrFI CCNGG 1 cut(s) 223
SetI ASST 6 cut(s) 23, 47, 54, 94, 114, 249
SfcI CTRYAG 1 cut(s) 40
SgrAI CRCCGGYG 1 cut(s) 282
SgsI GGCGCGCC 1 cut(s) 272
SnaBI TACGTA 1 cut(s) 52
Sse9I AATT 2 cut(s) 200, 206
SsiI CCGC 3 cut(s) 115, 213, 315
StyD4I CCNGG 1 cut(s) 221
TaaI ACNGT 2 cut(s) 121, 321
TaiI ACGT 2 cut(s) 54, 114
TaqI TCGA 1 cut(s) 83
TasI AATT 2 cut(s) 200, 206
TatI WGTACW 1 cut(s) 33
TseI GCWGC 1 cut(s) 247
TspGWI ACGGA 1 cut(s) 122
XapI RAATTY 1 cut(s) 206
ZraI GACGTC 1 cut(s) 112
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.