FvH4_5g25751

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000118
Physical Location & Seq
Reverse (-)
17247339 .. 17248329
991 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g25751.t1

Sequence Viewer

Length: 723 bp
ATGCGGACGTCCCTCCGTTCTTCTCCGTCCGGCCTTGACGACGGCTCGCCTCCACCCGAGCGGACGTCTCTGGCGTCCCCGACCATTTTTCCTTCCCGGCGAGATCGATTTGAAGGTCTGAGCAGCAATCTCCGCCCAAAACTTCAACCAAGATCGATCTCGCCGAAAAACTGGAATTCAGCAGATTCGTCGGGAAGGGAAAGTGGTCGGAGACGGCAGGGATGTCCGCTCGGGTGGAGGTGCATCGTCGTCTACGCCGGACAGAGAAAAATGGAGGGACGTCCACATTTTAAGCCCAGTGTGGACCAATTTCTCATTTTATATATAATCGGGGACGCCAGAGGTGTCCGCTCGGGTGGAGGTGCGGCGTCGTCGGAGCCGTCCGGTGAAGAACGAAGGGACGTCCGCACTTTAAAGGCTGTGCGGACGTCCTCTTCAGAACGGCTCCGTGAAGGTGGACAATTTAGGGAACTAATCACACCCTCAAGCCCGAAGGGAAATGGTCCACCCCACTCAAGGAACCACCCCCCATCCCCTTATTTGAATTTGACAGTCGATAAAGTGATTTCTAATGGTTGCTGGAACCTTTCTCTTGTTCAACAGTTTCTTAATCAAGATATTTTACTTACTATTTCCTCTATTCCACTACCTTTACATCCTTATGCTGATCAGTTTGTTTGGGGACTTAGAGCATCTCCAACAGCTTCCCCAGAATTTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

26.47

Weight (kDa)

10.34

Isoelectric Point (pI)

71.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 5 cut(s) 11, 68, 283, 405, 431
AccBSI CCGCTC 3 cut(s) 61, 229, 351
AccI GTMKAC 1 cut(s) 252
AciI CCGC 8 cut(s) 4, 61, 133, 227, 349, 365, 406, 424
AcsI RAATTY 3 cut(s) 175, 544, 713
AcuI CTGAAG 1 cut(s) 420
AcyI GRCGYC 8 cut(s) 8, 65, 74, 280, 336, 368, 402, 428
AfiI CCNNNNNNNGG 1 cut(s) 516
AgsI TTSAA 4 cut(s) 113, 146, 544, 599
AluBI AGCT 1 cut(s) 704
AluI AGCT 1 cut(s) 704
Alw26I GTCTC 2 cut(s) 72, 205
Ama87I CYCGRG 3 cut(s) 56, 230, 352
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 123
ApoI RAATTY 3 cut(s) 175, 544, 713
AspS9I GGNCC 2 cut(s) 304, 503
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 1 cut(s) 398
AvaI CYCGRG 3 cut(s) 56, 230, 352
AvaII GGWCC 2 cut(s) 304, 503
BbvI GCAGC 1 cut(s) 135
BccI CCATC 1 cut(s) 538
BceAI ACGGC 4 cut(s) 58, 230, 364, 458
BcgI CGANNNNNNTGC 2 cut(s) 171, 205
BclI TGATCA 1 cut(s) 667
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 2 cut(s) 72, 205
BisI GCNGC 2 cut(s) 124, 366
BlsI GCNGC 2 cut(s) 125, 367
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 2 cut(s) 304, 503
BmeT110I CYCGRG 3 cut(s) 56, 230, 352
BmgT120I GGNCC 2 cut(s) 304, 503
BmiI GGNNCC 4 cut(s) 378, 446, 521, 584
BmrFI CCNGG 1 cut(s) 97
BmrI ACTGGG 1 cut(s) 291
BmsI GCATC 2 cut(s) 252, 701
BmuI ACTGGG 1 cut(s) 291
BpuEI CTTGAG 2 cut(s) 469, 499
BpuMI CCSGG 1 cut(s) 97
Bsa29I ATCGAT 2 cut(s) 106, 155
BsaHI GRCGYC 8 cut(s) 8, 65, 74, 280, 336, 368, 402, 428
BsaWI WCCGGW 1 cut(s) 383
Bsc4I CCNNNNNNNGG 1 cut(s) 516
Bse1I ACTGG 2 cut(s) 176, 297
BseCI ATCGAT 2 cut(s) 106, 155
BseGI GGATG 3 cut(s) 227, 530, 655
BseLI CCNNNNNNNGG 1 cut(s) 516
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 2 cut(s) 176, 297
BseXI GCAGC 1 cut(s) 135
BshFI GGCC 1 cut(s) 33
BshVI ATCGAT 2 cut(s) 106, 155
BsiHKCI CYCGRG 3 cut(s) 56, 230, 352
BsiSI CCGG 4 cut(s) 30, 97, 258, 384
BslFI GGGAC 5 cut(s) 61, 291, 347, 413, 696
BslI CCNNNNNNNGG 1 cut(s) 516
BsmAI GTCTC 2 cut(s) 72, 205
BsmBI CGTCTC 2 cut(s) 72, 205
BsmFI GGGAC 5 cut(s) 61, 291, 347, 413, 696
BsnI GGCC 1 cut(s) 33
BsoBI CYCGRG 3 cut(s) 56, 230, 352
Bsp143I GATC 4 cut(s) 103, 152, 156, 667
BspACI CCGC 8 cut(s) 4, 61, 133, 227, 349, 365, 406, 424
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 111
BspDI ATCGAT 2 cut(s) 106, 155
BspLI GGNNCC 4 cut(s) 378, 446, 521, 584
BsrBI CCGCTC 3 cut(s) 61, 229, 351
BsrI ACTGG 2 cut(s) 176, 297
BssMI GATC 4 cut(s) 103, 152, 156, 667
BssNI GRCGYC 8 cut(s) 8, 65, 74, 280, 336, 368, 402, 428
Bst4CI ACNGT 2 cut(s) 553, 603
Bst6I CTCTTC 1 cut(s) 439
BstACI GRCGYC 8 cut(s) 8, 65, 74, 280, 336, 368, 402, 428
BstC8I GCNNGC 1 cut(s) 47
BstDEI CTNAG 2 cut(s) 119, 686
BstF5I GGATG 3 cut(s) 227, 530, 655
BstKTI GATC 4 cut(s) 106, 155, 159, 670
BstMAI GTCTC 2 cut(s) 72, 205
BstMBI GATC 4 cut(s) 103, 152, 156, 667
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 135
Bsu15I ATCGAT 2 cut(s) 106, 155
BsuRI GGCC 1 cut(s) 33
BsuTUI ATCGAT 2 cut(s) 106, 155
BtsCI GGATG 3 cut(s) 227, 530, 655
BtsIMutI CAGTG 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 47
Cfr13I GGNCC 2 cut(s) 304, 503
ClaI ATCGAT 2 cut(s) 106, 155
CseI GACGC 3 cut(s) 63, 344, 357
CviJI RGCY 8 cut(s) 33, 45, 295, 379, 419, 445, 489, 704
CviKI_1 RGCY 8 cut(s) 33, 45, 295, 379, 419, 445, 489, 704
DdeI CTNAG 2 cut(s) 119, 686
DpnI GATC 4 cut(s) 105, 154, 158, 669
DpnII GATC 4 cut(s) 103, 152, 156, 667
DraI TTTAAA 1 cut(s) 414
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
EciI GGCGGA 1 cut(s) 122
Eco47I GGWCC 2 cut(s) 304, 503
Eco57I CTGAAG 1 cut(s) 420
Eco88I CYCGRG 3 cut(s) 56, 230, 352
EcoRI GAATTC 1 cut(s) 175
Esp3I CGTCTC 2 cut(s) 72, 205
FaiI YATR 4 cut(s) 322, 324, 326, 663
FaqI GGGAC 5 cut(s) 61, 291, 347, 413, 696
FbaI TGATCA 1 cut(s) 667
FblI GTMKAC 1 cut(s) 252
Fnu4HI GCNGC 2 cut(s) 124, 366
FokI GGATG 3 cut(s) 234, 517, 642
Fsp4HI GCNGC 2 cut(s) 124, 366
GluI GCNGC 2 cut(s) 124, 366
HaeIII GGCC 1 cut(s) 33
HapII CCGG 4 cut(s) 30, 97, 258, 384
HgaI GACGC 3 cut(s) 63, 344, 357
Hin1I GRCGYC 8 cut(s) 8, 65, 74, 280, 336, 368, 402, 428
HinfI GANTC 1 cut(s) 185
HpaII CCGG 4 cut(s) 30, 97, 258, 384
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 5 cut(s) 253, 284, 304, 458, 506
Hpy188I TCNGA 4 cut(s) 120, 210, 376, 439
Hpy188III TCNNGA 2 cut(s) 192, 614
Hpy8I GTNNAC 5 cut(s) 253, 284, 304, 458, 506
Hpy99I CGWCG 5 cut(s) 44, 193, 251, 373, 376
HpyAV CCTTC 6 cut(s) 102, 107, 189, 390, 446, 487
HpyCH4III ACNGT 2 cut(s) 553, 603
HpyCH4IV ACGT 5 cut(s) 8, 65, 280, 402, 428
HpyCH4V TGCA 1 cut(s) 243
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 2 cut(s) 119, 686
HpySE526I ACGT 5 cut(s) 8, 65, 280, 402, 428
Hsp92I GRCGYC 8 cut(s) 8, 65, 74, 280, 336, 368, 402, 428
Ksp22I TGATCA 1 cut(s) 667
Kzo9I GATC 4 cut(s) 103, 152, 156, 667
LmnI GCTCC 2 cut(s) 376, 450
Lsp1109I GCAGC 1 cut(s) 135
LweI GCATC 2 cut(s) 252, 701
MaeII ACGT 5 cut(s) 8, 65, 280, 402, 428
MalI GATC 4 cut(s) 105, 154, 158, 669
MbiI CCGCTC 3 cut(s) 61, 229, 351
MboI GATC 4 cut(s) 103, 152, 156, 667
MboII GAAGA 3 cut(s) 12, 401, 426
MluCI AATT 5 cut(s) 175, 308, 461, 544, 713
MmeI TCCRAC 3 cut(s) 188, 354, 722
MnlI CCTC 9 cut(s) 23, 60, 231, 268, 335, 353, 442, 493, 646
MseI TTAA 3 cut(s) 291, 413, 609
MslI CAYNNNNRTG 1 cut(s) 660
MspI CCGG 4 cut(s) 30, 97, 258, 384
MspR9I CCNGG 1 cut(s) 97
MwoI GCNNNNNNNGC 1 cut(s) 132
NciI CCSGG 1 cut(s) 97
NdeII GATC 4 cut(s) 103, 152, 156, 667
NlaIV GGNNCC 4 cut(s) 378, 446, 521, 584
PcsI WCGNNNNNNNCGW 3 cut(s) 71, 161, 377
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 2 cut(s) 125, 367
PspN4I GGNNCC 4 cut(s) 378, 446, 521, 584
PspPI GGNCC 2 cut(s) 304, 503
RseI CAYNNNNRTG 1 cut(s) 660
SaqAI TTAA 3 cut(s) 291, 413, 609
SatI GCNGC 2 cut(s) 124, 366
Sau3AI GATC 4 cut(s) 103, 152, 156, 667
Sau96I GGNCC 2 cut(s) 304, 503
ScrFI CCNGG 1 cut(s) 97
SfaNI GCATC 2 cut(s) 252, 701
SinI GGWCC 2 cut(s) 304, 503
SmiMI CAYNNNNRTG 1 cut(s) 660
SmlI CTYRAG 2 cut(s) 484, 514
SmoI CTYRAG 2 cut(s) 484, 514
Sse9I AATT 5 cut(s) 175, 308, 461, 544, 713
SsiI CCGC 8 cut(s) 4, 61, 133, 227, 349, 365, 406, 424
StyD4I CCNGG 1 cut(s) 95
TaaI ACNGT 2 cut(s) 553, 603
TaiI ACGT 5 cut(s) 11, 68, 283, 405, 431
TaqI TCGA 3 cut(s) 106, 155, 555
TasI AATT 5 cut(s) 175, 308, 461, 544, 713
TauI GCSGC 1 cut(s) 368
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 3 cut(s) 291, 413, 609
Tru9I TTAA 3 cut(s) 291, 413, 609
TscAI CASTG 1 cut(s) 304
TseI GCWGC 1 cut(s) 123
TspGWI ACGGA 3 cut(s) 5, 15, 437
TspRI CASTG 1 cut(s) 304
VpaK11BI GGWCC 2 cut(s) 304, 503
XapI RAATTY 3 cut(s) 175, 544, 713
XmiI GTMKAC 1 cut(s) 252
ZraI GACGTC 5 cut(s) 9, 66, 281, 403, 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.