FvH4_6g22051

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Reverse (-)
15736141 .. 15737395
1255 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22051.t1

Sequence Viewer

Length: 486 bp
ATGGCATACAAGAACACAATCCAGACTTGGGCTGACAAAGCCTTCACACTTCCCAGGCCATCATTGCACAGTTTCCCTTTCCCTGGGCTACTGGTAGCTAGCTTCTGCGTTTCTGATCTGGCTCTGTCTCTGCGGCCTAATAATATCTCTGCGCGCAGGTCCCCAAGAGATCCACTTCGCAAAGGATATCTTGTTGTTCAGAGGGTTACCAAACTTCCGTATCTGCTAGCTGAGGTTGATGCTATTGGTATATCAAATGAAGTGGTGGTGTACTTGAGGCTTTTTGTTAATCTATCTGACCTTGAAGGATATGAAGCGGACATTCGCACTCGGCTTAAAATGCGAACGTCCATCCGTTCTCCATCCTCCGGCGCCGGCGACGGCGCGCCTCCACCCCAGAACACTCCAACAGCGTCCCCGACCACTTTCCCTTCCCGGCGAGTCCATTATTTTCCGGTTTTCCGGCGAGATCACCCAAAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.04

Weight (kDa)

10.26

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 371
AccII CGCG 2 cut(s) 154, 386
AciI CCGC 2 cut(s) 133, 317
AclWI GGATC 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 3 cut(s) 28, 83, 368
AgsI TTSAA 1 cut(s) 305
AjnI CCWGG 2 cut(s) 53, 82
AluBI AGCT 3 cut(s) 98, 102, 230
AluI AGCT 3 cut(s) 98, 102, 230
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 1 cut(s) 164
AoxI GGCC 2 cut(s) 56, 134
AscI GGCGCGCC 1 cut(s) 384
AspLEI GCGC 5 cut(s) 154, 156, 374, 386, 388
AspS9I GGNCC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 436
AsuHPI GGTGA 1 cut(s) 464
AsuNHI GCTAGC 2 cut(s) 98, 226
AvaII GGWCC 1 cut(s) 159
BaeI ACNNNNGTAYC 2 cut(s) 203, 236
BanI GGYRCC 1 cut(s) 371
BbvCI CCTCAGC 1 cut(s) 231
BccI CCATC 3 cut(s) 67, 359, 370
BceAI ACGGC 1 cut(s) 397
BciT130I CCWGG 2 cut(s) 55, 84
BcnI CCSGG 1 cut(s) 436
BcoDI GTCTC 1 cut(s) 132
BfaI CTAG 2 cut(s) 99, 227
BfoI RGCGCY 1 cut(s) 375
BfuAI ACCTGC 1 cut(s) 147
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 3 cut(s) 55, 84, 436
Bme18I GGWCC 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 2 cut(s) 161, 373
BmrFI CCNGG 3 cut(s) 55, 84, 436
BmsI GCATC 1 cut(s) 229
BmtI GCTAGC 2 cut(s) 102, 230
Bpu10I CCTNAGC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 295
BpuMI CCSGG 1 cut(s) 436
BsaHI GRCGYC 1 cut(s) 372
BsaJI CCNNGG 3 cut(s) 53, 82, 83
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 83, 368
Bse118I RCCGGY 1 cut(s) 374
Bse1I ACTGG 1 cut(s) 96
Bse3DI GCAATG 1 cut(s) 62
BseBI CCWGG 2 cut(s) 55, 84
BseDI CCNNGG 3 cut(s) 53, 82, 83
BseGI GGATG 2 cut(s) 351, 362
BseLI CCNNNNNNNGG 3 cut(s) 28, 83, 368
BseMI GCAATG 1 cut(s) 62
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 1 cut(s) 96
BsePI GCGCGC 2 cut(s) 152, 384
Bsh1236I CGCG 2 cut(s) 154, 386
BshFI GGCC 2 cut(s) 58, 136
BshNI GGYRCC 1 cut(s) 371
BsiSI CCGG 5 cut(s) 369, 375, 436, 455, 463
BslFI GGGAC 2 cut(s) 145, 400
BslI CCNNNNNNNGG 3 cut(s) 28, 83, 368
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 2 cut(s) 145, 400
BsnI GGCC 2 cut(s) 58, 136
Bsp143I GATC 3 cut(s) 115, 169, 469
BspACI CCGC 2 cut(s) 133, 317
BspANI GGCC 2 cut(s) 58, 136
BspCNI CTCAG 1 cut(s) 223
BspFNI CGCG 2 cut(s) 154, 386
BspLI GGNNCC 2 cut(s) 161, 373
BspMI ACCTGC 1 cut(s) 147
BspOI GCTAGC 2 cut(s) 102, 230
BspPI GGATC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 371
BsrDI GCAATG 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 374
BsrI ACTGG 1 cut(s) 96
BssAI RCCGGY 1 cut(s) 374
BssECI CCNNGG 3 cut(s) 53, 82, 83
BssHII GCGCGC 2 cut(s) 152, 384
BssMI GATC 3 cut(s) 115, 169, 469
BssNI GRCGYC 1 cut(s) 372
Bst2UI CCWGG 2 cut(s) 55, 84
Bst4CI ACNGT 1 cut(s) 71
BstACI GRCGYC 1 cut(s) 372
BstC8I GCNNGC 5 cut(s) 100, 154, 228, 376, 386
BstDEI CTNAG 1 cut(s) 231
BstEII GGTNACC 1 cut(s) 205
BstF5I GGATG 2 cut(s) 351, 362
BstFNI CGCG 2 cut(s) 154, 386
BstH2I RGCGCY 1 cut(s) 375
BstHHI GCGC 5 cut(s) 154, 156, 374, 386, 388
BstKTI GATC 3 cut(s) 118, 172, 472
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 3 cut(s) 115, 169, 469
BstMWI GCNNNNNNNGC 3 cut(s) 38, 64, 340
BstNI CCWGG 2 cut(s) 55, 84
BstPI GGTNACC 1 cut(s) 205
BstSCI CCNGG 3 cut(s) 53, 82, 434
BstUI CGCG 2 cut(s) 154, 386
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BsuRI GGCC 2 cut(s) 58, 136
BtsCI GGATG 2 cut(s) 351, 362
BveI ACCTGC 1 cut(s) 147
Cac8I GCNNGC 5 cut(s) 100, 154, 228, 376, 386
CfoI GCGC 5 cut(s) 154, 156, 374, 386, 388
Cfr10I RCCGGY 1 cut(s) 374
Cfr13I GGNCC 1 cut(s) 159
CseI GACGC 1 cut(s) 402
Csp6I GTAC 1 cut(s) 271
CspCI CAANNNNNGTGG 2 cut(s) 243, 278
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 1 cut(s) 231
DinI GGCGCC 1 cut(s) 373
DpnI GATC 3 cut(s) 117, 171, 471
DpnII GATC 3 cut(s) 115, 169, 469
Eco32I GATATC 1 cut(s) 188
Eco47I GGWCC 1 cut(s) 159
Eco91I GGTNACC 1 cut(s) 205
EcoO109I RGGNCCY 1 cut(s) 159
EcoO65I GGTNACC 1 cut(s) 205
EcoRII CCWGG 2 cut(s) 53, 82
EcoRV GATATC 1 cut(s) 188
EgeI GGCGCC 1 cut(s) 373
EheI GGCGCC 1 cut(s) 373
FaiI YATR 3 cut(s) 7, 251, 312
FalI AAGNNNNNCTT 2 cut(s) 174, 206
FaqI GGGAC 2 cut(s) 145, 400
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 2 cut(s) 338, 349
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 2 cut(s) 99, 227
GlaI GCGC 5 cut(s) 153, 155, 373, 385, 387
GluI GCNGC 1 cut(s) 134
HaeII RGCGCY 1 cut(s) 375
HaeIII GGCC 2 cut(s) 58, 136
HapII CCGG 5 cut(s) 369, 375, 436, 455, 463
HgaI GACGC 1 cut(s) 402
HhaI GCGC 5 cut(s) 154, 156, 374, 386, 388
Hin1I GRCGYC 1 cut(s) 372
Hin6I GCGC 5 cut(s) 152, 154, 372, 384, 386
HinP1I GCGC 5 cut(s) 152, 154, 372, 384, 386
HinfI GANTC 1 cut(s) 441
HpaII CCGG 5 cut(s) 369, 375, 436, 455, 463
HphI GGTGA 1 cut(s) 464
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 3 cut(s) 115, 201, 298
Hpy188III TCNNGA 1 cut(s) 22
Hpy8I GTNNAC 1 cut(s) 271
Hpy99I CGWCG 1 cut(s) 383
HpyAV CCTTC 3 cut(s) 52, 299, 441
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 1 cut(s) 67
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 64, 340
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 1 cut(s) 347
Hsp92I GRCGYC 1 cut(s) 372
HspAI GCGC 5 cut(s) 152, 154, 372, 384, 386
KasI GGCGCC 1 cut(s) 371
KroI GCCGGC 1 cut(s) 374
KroNI GCCGGC 1 cut(s) 376
Kzo9I GATC 3 cut(s) 115, 169, 469
LweI GCATC 1 cut(s) 229
MaeI CTAG 2 cut(s) 99, 227
MaeII ACGT 1 cut(s) 347
MaeIII GTNAC 1 cut(s) 205
MalI GATC 3 cut(s) 117, 171, 471
MboI GATC 3 cut(s) 115, 169, 469
MflI RGATCY 1 cut(s) 169
Mly113I GGCGCC 1 cut(s) 372
MlyI GAGTC 1 cut(s) 450
MmeI TCCRAC 1 cut(s) 431
MnlI CCTC 5 cut(s) 195, 226, 270, 376, 399
MreI CGCCGGCG 1 cut(s) 374
MroNI GCCGGC 1 cut(s) 374
MseI TTAA 3 cut(s) 288, 336, 484
MspI CCGG 5 cut(s) 369, 375, 436, 455, 463
MspR9I CCNGG 3 cut(s) 55, 84, 436
MvaI CCWGG 2 cut(s) 55, 84
MvnI CGCG 2 cut(s) 154, 386
MwoI GCNNNNNNNGC 3 cut(s) 38, 64, 340
NaeI GCCGGC 1 cut(s) 376
NarI GGCGCC 1 cut(s) 372
NciI CCSGG 1 cut(s) 436
NdeII GATC 3 cut(s) 115, 169, 469
NgoMIV GCCGGC 1 cut(s) 374
NheI GCTAGC 2 cut(s) 98, 226
NlaIV GGNNCC 2 cut(s) 161, 373
NmeAIII GCCGAG 1 cut(s) 310
PalAI GGCGCGCC 1 cut(s) 384
PasI CCCWGGG 1 cut(s) 83
PauI GCGCGC 2 cut(s) 152, 384
PdiI GCCGGC 1 cut(s) 376
PkrI GCNGC 1 cut(s) 135
PleI GAGTC 1 cut(s) 449
PluTI GGCGCC 1 cut(s) 375
PpsI GAGTC 1 cut(s) 449
PpuMI RGGWCCY 1 cut(s) 159
Psp5II RGGWCCY 1 cut(s) 159
Psp6I CCWGG 2 cut(s) 53, 82
PspEI GGTNACC 1 cut(s) 205
PspGI CCWGG 2 cut(s) 53, 82
PspN4I GGNNCC 2 cut(s) 161, 373
PspPI GGNCC 1 cut(s) 159
PspPPI RGGWCCY 1 cut(s) 159
PsuI RGATCY 1 cut(s) 169
PteI GCGCGC 2 cut(s) 152, 384
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SaqAI TTAA 3 cut(s) 288, 336, 484
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 3 cut(s) 115, 169, 469
Sau96I GGNCC 1 cut(s) 159
SchI GAGTC 1 cut(s) 450
ScrFI CCNGG 3 cut(s) 55, 84, 436
SetI ASST 7 cut(s) 100, 104, 161, 232, 237, 303, 350
SfaNI GCATC 1 cut(s) 229
SfoI GGCGCC 1 cut(s) 373
SgrAI CRCCGGYG 1 cut(s) 374
SgsI GGCGCGCC 1 cut(s) 384
SinI GGWCC 1 cut(s) 159
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SsiI CCGC 2 cut(s) 133, 317
SspDI GGCGCC 1 cut(s) 371
SspMI CTAG 2 cut(s) 99, 227
StyD4I CCNGG 3 cut(s) 53, 82, 434
TaaI ACNGT 1 cut(s) 71
TaiI ACGT 1 cut(s) 350
TatI WGTACW 1 cut(s) 270
TauI GCSGC 1 cut(s) 136
Tru1I TTAA 3 cut(s) 288, 336, 484
Tru9I TTAA 3 cut(s) 288, 336, 484
TspDTI ATGAA 2 cut(s) 273, 327
TspGWI ACGGA 2 cut(s) 207, 344
VpaK11BI GGWCC 1 cut(s) 159
XspI CTAG 2 cut(s) 99, 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.