FvH4_7g25280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000118
Physical Location & Seq
Reverse (-)
19333801 .. 19336627
2827 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25280.t1

Sequence Viewer

Length: 606 bp
ATGGCGAGACATGGCGGCTTCTTGGTGGCCCTAGGCAAATCTAGGATGGTAAAGGCGGCCCAAGGTGTGTCTAAGAGGGTCAAGGCGGCCAAGGGCGGTTCAAGGTGGCTCAAGGCGGTCAAAAGCGGGCGGCCCTTATCAGATCTAGGAGGGTCAAGGCGGTTCAAGGAGGCCCAAGGCGTTCCAAGGCGGGCTAAGGCGGGCCAAGGAGGTTCAAAGCGGGTAAAGGCGCCCCTTGGCCTCCATTTGGCTTCCCTAGGAGGGTCAAAGCGGTCCAAAGCCGGTCAAGGCGGTCCAAGACGGGTTAGGGCAGGTAAAGGCGGGTCAAAACGCGCCAAAGCGGGTCAAGGCGGGTCATGGCGGTCCAAGGCGGGTCAAACCGGGTTAAAGCGGCCTAAGACACGCCAAGGCGGGTCAAGGTGGCCCCTTGGTGAGTCATGGCGGCATCTTGGTGGCCCTAGGAAAACTGGAATTCAGCGGACTCGCCGGGGAGGGAAAGTGGTCGGAGACGCTGCTGGAGTCCGCTGGGGTGGAGGCGCGCCCTCGTCGGCGCCGTACGGTGGCGAACGGAGGGACGTCAGCACACTGTGCGGACGTCCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

20.88

Weight (kDa)

12.0

Isoelectric Point (pI)

60.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 579, 598
Acc36I ACCTGC 1 cut(s) 302
AccB1I GGYRCC 2 cut(s) 229, 550
AccII CGCG 2 cut(s) 333, 539
AcoI YGGCCR 1 cut(s) 87
AcsI RAATTY 1 cut(s) 471
AcyI GRCGYC 4 cut(s) 230, 551, 576, 595
AdeI CACNNNGTG 1 cut(s) 588
AfaI GTAC 1 cut(s) 557
AfiI CCNNNNNNNGG 3 cut(s) 247, 261, 560
AgsI TTSAA 3 cut(s) 102, 166, 216
Alw26I GTCTC 1 cut(s) 501
ApeKI GCWGC 1 cut(s) 512
ApoI RAATTY 1 cut(s) 471
AscI GGCGCGCC 1 cut(s) 537
AspA2I CCTAGG 3 cut(s) 31, 256, 458
AspLEI GCGC 5 cut(s) 232, 335, 539, 541, 553
AsuC2I CCSGG 2 cut(s) 382, 488
AsuHPI GGTGA 1 cut(s) 443
AvaII GGWCC 3 cut(s) 273, 293, 363
AvrII CCTAGG 3 cut(s) 31, 256, 458
BanI GGYRCC 2 cut(s) 229, 550
BbvI GCAGC 1 cut(s) 499
BccI CCATC 1 cut(s) 40
BceAI ACGGC 1 cut(s) 538
BcnI CCSGG 2 cut(s) 382, 488
BcoDI GTCTC 1 cut(s) 501
BfaI CTAG 5 cut(s) 32, 42, 146, 257, 459
BfoI RGCGCY 2 cut(s) 233, 554
BfuAI ACCTGC 1 cut(s) 302
BglII AGATCT 1 cut(s) 142
BisI GCNGC 7 cut(s) 16, 57, 87, 131, 392, 443, 513
BlnI CCTAGG 3 cut(s) 31, 256, 458
BlsI GCNGC 7 cut(s) 17, 58, 88, 132, 393, 444, 514
Bme1390I CCNGG 2 cut(s) 382, 488
Bme18I GGWCC 3 cut(s) 273, 293, 363
BmiI GGNNCC 3 cut(s) 231, 425, 552
BmrFI CCNGG 2 cut(s) 382, 488
BmsI GCATC 1 cut(s) 454
BpmI CTGGAG 1 cut(s) 537
Bpu10I CCTNAGC 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 95
BpuMI CCSGG 2 cut(s) 382, 488
BsaHI GRCGYC 4 cut(s) 230, 551, 576, 595
BsaXI ACNNNNNCTCC 2 cut(s) 483, 513
Bsc4I CCNNNNNNNGG 3 cut(s) 247, 261, 560
Bse118I RCCGGY 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 472
BseGI GGATG 1 cut(s) 51
BseLI CCNNNNNNNGG 3 cut(s) 247, 261, 560
BseNI ACTGG 1 cut(s) 472
BsePI GCGCGC 1 cut(s) 537
BseXI GCAGC 1 cut(s) 499
BseYI CCCAGC 1 cut(s) 525
Bsh1236I CGCG 2 cut(s) 333, 539
BshNI GGYRCC 2 cut(s) 229, 550
BsiSI CCGG 3 cut(s) 282, 381, 487
BsiWI CGTACG 1 cut(s) 555
BslFI GGGAC 1 cut(s) 587
BslI CCNNNNNNNGG 3 cut(s) 247, 261, 560
BsmAI GTCTC 1 cut(s) 501
BsmBI CGTCTC 1 cut(s) 501
BsmFI GGGAC 1 cut(s) 587
Bsp143I GATC 1 cut(s) 142
BspFNI CGCG 2 cut(s) 333, 539
BspLI GGNNCC 3 cut(s) 231, 425, 552
BspMI ACCTGC 1 cut(s) 302
BspT107I GGYRCC 2 cut(s) 229, 550
BsrFI RCCGGY 1 cut(s) 281
BsrI ACTGG 1 cut(s) 472
BssAI RCCGGY 1 cut(s) 281
BssHII GCGCGC 1 cut(s) 537
BssMI GATC 1 cut(s) 142
BssNI GRCGYC 4 cut(s) 230, 551, 576, 595
Bst4CI ACNGT 2 cut(s) 560, 588
BstACI GRCGYC 4 cut(s) 230, 551, 576, 595
BstAPI GCANNNNNTGC 1 cut(s) 588
BstC8I GCNNGC 4 cut(s) 128, 192, 202, 539
BstDEI CTNAG 3 cut(s) 72, 195, 396
BstF5I GGATG 1 cut(s) 51
BstFNI CGCG 2 cut(s) 333, 539
BstH2I RGCGCY 2 cut(s) 233, 554
BstHHI GCGC 5 cut(s) 232, 335, 539, 541, 553
BstKTI GATC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 501
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 1 cut(s) 588
BstSCI CCNGG 2 cut(s) 380, 486
BstUI CGCG 2 cut(s) 333, 539
BstV1I GCAGC 1 cut(s) 499
BstX2I RGATCY 1 cut(s) 142
BstYI RGATCY 1 cut(s) 142
BtsCI GGATG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 584
BveI ACCTGC 1 cut(s) 302
Cac8I GCNNGC 4 cut(s) 128, 192, 202, 539
CfoI GCGC 5 cut(s) 232, 335, 539, 541, 553
Cfr10I RCCGGY 1 cut(s) 281
CseI GACGC 1 cut(s) 518
Csp6I GTAC 1 cut(s) 556
CviAII CATG 3 cut(s) 11, 357, 438
CviQI GTAC 1 cut(s) 556
DdeI CTNAG 3 cut(s) 72, 195, 396
DinI GGCGCC 2 cut(s) 231, 552
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
DraIII CACNNNGTG 1 cut(s) 588
EaeI YGGCCR 1 cut(s) 87
Eco47I GGWCC 3 cut(s) 273, 293, 363
EcoRI GAATTC 1 cut(s) 471
EgeI GGCGCC 2 cut(s) 231, 552
EheI GGCGCC 2 cut(s) 231, 552
Esp3I CGTCTC 1 cut(s) 501
FaeI CATG 3 cut(s) 14, 360, 441
FaiI YATR 3 cut(s) 12, 358, 439
FaqI GGGAC 1 cut(s) 587
FatI CATG 3 cut(s) 10, 356, 437
FauI CCCGC 9 cut(s) 119, 183, 193, 213, 314, 334, 344, 364, 404
Fnu4HI GCNGC 7 cut(s) 16, 57, 87, 131, 392, 443, 513
FokI GGATG 1 cut(s) 58
Fsp4HI GCNGC 7 cut(s) 16, 57, 87, 131, 392, 443, 513
FspBI CTAG 5 cut(s) 32, 42, 146, 257, 459
GlaI GCGC 5 cut(s) 231, 334, 538, 540, 552
GluI GCNGC 7 cut(s) 16, 57, 87, 131, 392, 443, 513
GsaI CCCAGC 1 cut(s) 529
GsuI CTGGAG 1 cut(s) 537
HaeII RGCGCY 2 cut(s) 233, 554
HapII CCGG 3 cut(s) 282, 381, 487
HgaI GACGC 1 cut(s) 518
HhaI GCGC 5 cut(s) 232, 335, 539, 541, 553
Hin1I GRCGYC 4 cut(s) 230, 551, 576, 595
Hin1II CATG 3 cut(s) 14, 360, 441
Hin6I GCGC 5 cut(s) 230, 333, 537, 539, 551
HinP1I GCGC 5 cut(s) 230, 333, 537, 539, 551
HinfI GANTC 3 cut(s) 434, 481, 519
HpaII CCGG 3 cut(s) 282, 381, 487
HphI GGTGA 1 cut(s) 443
Hpy188I TCNGA 2 cut(s) 142, 506
Hpy99I CGWCG 1 cut(s) 550
HpyCH4III ACNGT 2 cut(s) 560, 588
HpyCH4IV ACGT 2 cut(s) 576, 595
HpyF10VI GCNNNNNNNGC 1 cut(s) 588
HpyF3I CTNAG 3 cut(s) 72, 195, 396
HpySE526I ACGT 2 cut(s) 576, 595
Hsp92I GRCGYC 4 cut(s) 230, 551, 576, 595
Hsp92II CATG 3 cut(s) 14, 360, 441
HspAI GCGC 5 cut(s) 230, 333, 537, 539, 551
KasI GGCGCC 2 cut(s) 229, 550
Kzo9I GATC 1 cut(s) 142
LpnPI CCDG 7 cut(s) 295, 297, 394, 453, 500, 501, 511
Lsp1109I GCAGC 1 cut(s) 499
LweI GCATC 1 cut(s) 454
MaeI CTAG 5 cut(s) 32, 42, 146, 257, 459
MaeII ACGT 2 cut(s) 576, 595
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MflI RGATCY 1 cut(s) 142
MluCI AATT 1 cut(s) 471
Mly113I GGCGCC 2 cut(s) 230, 551
MlyI GAGTC 3 cut(s) 443, 475, 528
MmeI TCCRAC 1 cut(s) 484
MseI TTAA 1 cut(s) 386
MslI CAYNNNNRTG 1 cut(s) 450
MspA1I CMGCKG 2 cut(s) 478, 525
MspI CCGG 3 cut(s) 282, 381, 487
MspR9I CCNGG 2 cut(s) 382, 488
MvnI CGCG 2 cut(s) 333, 539
MwoI GCNNNNNNNGC 1 cut(s) 588
NarI GGCGCC 2 cut(s) 230, 551
NciI CCSGG 2 cut(s) 382, 488
NdeII GATC 1 cut(s) 142
NlaIII CATG 3 cut(s) 14, 360, 441
NlaIV GGNNCC 3 cut(s) 231, 425, 552
PalAI GGCGCGCC 1 cut(s) 537
PauI GCGCGC 1 cut(s) 537
PcsI WCGNNNNNNNCGW 1 cut(s) 551
Pfl23II CGTACG 1 cut(s) 555
PkrI GCNGC 7 cut(s) 17, 58, 88, 132, 393, 444, 514
PleI GAGTC 3 cut(s) 442, 475, 527
PluTI GGCGCC 2 cut(s) 233, 554
PpsI GAGTC 3 cut(s) 442, 475, 527
PspFI CCCAGC 1 cut(s) 525
PspLI CGTACG 1 cut(s) 555
PspN4I GGNNCC 3 cut(s) 231, 425, 552
PsuI RGATCY 1 cut(s) 142
PteI GCGCGC 1 cut(s) 537
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
RseI CAYNNNNRTG 1 cut(s) 450
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 7 cut(s) 16, 57, 87, 131, 392, 443, 513
Sau3AI GATC 1 cut(s) 142
SchI GAGTC 3 cut(s) 443, 475, 528
ScrFI CCNGG 2 cut(s) 382, 488
SetI ASST 7 cut(s) 67, 107, 214, 316, 422, 579, 598
SfaNI GCATC 1 cut(s) 454
SfoI GGCGCC 2 cut(s) 231, 552
SgsI GGCGCGCC 1 cut(s) 537
SinI GGWCC 3 cut(s) 273, 293, 363
SmiMI CAYNNNNRTG 1 cut(s) 450
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 1 cut(s) 471
SspDI GGCGCC 2 cut(s) 229, 550
SspMI CTAG 5 cut(s) 32, 42, 146, 257, 459
StyD4I CCNGG 2 cut(s) 380, 486
TaaI ACNGT 2 cut(s) 560, 588
TaiI ACGT 2 cut(s) 579, 598
TasI AATT 1 cut(s) 471
TauI GCSGC 6 cut(s) 18, 59, 89, 133, 394, 445
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TscAI CASTG 1 cut(s) 591
TseI GCWGC 1 cut(s) 512
TspGWI ACGGA 1 cut(s) 583
TspRI CASTG 1 cut(s) 591
VpaK11BI GGWCC 3 cut(s) 273, 293, 363
XapI RAATTY 1 cut(s) 471
XmaJI CCTAGG 3 cut(s) 31, 256, 458
XspI CTAG 5 cut(s) 32, 42, 146, 257, 459
ZraI GACGTC 2 cut(s) 577, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.