FvH4_4g10053

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000118
Physical Location & Seq
Reverse (-)
12726072 .. 12728694
2623 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g10053.t1

Sequence Viewer

Length: 459 bp
ATGGAAGTGCTAAAGGAATGTGACCACTTGATATCCAACCTTGAAAAAGGGTGCAAAGAAAAGAAGCTTGAGGATATAATTCCTTTGCAAGTTGCACAAGAAGATGATGTGGAAAGTAATGACAAGATTAGAACCCTGCAAGTAGAGCTTAAGGGACAAATCCTCTTAAATATGGCATTAATTCGAGTGGATACAACTCTAGATGTTTGCAACCAGAATGTTCGAAACAACAACGAGCATGATGGACATGATCTTGAGGAAAAAGCATTGAGGTCTATTAAAATTGAAGCTCCAAGCTTTGTTGGTCAACTGAATGCAAAGGTGGGTCTTGATTGGATTTTGAACATGGACCACTATTTTGAATGCTCCTCCTTGATTCATTTTGTTCCGAAATATGGATTGTTGATTAGTATGTCGTTTGGAATTGTTGAAATTGTAGAATTGGAGGTAGAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag zf-CCHC

Protein Analysis

153

Amino Acids

17.3

Weight (kDa)

4.7

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 395
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 5 cut(s) 44, 287, 343, 362, 431
AluBI AGCT 5 cut(s) 67, 148, 290, 297, 456
AluI AGCT 5 cut(s) 67, 148, 290, 297, 456
ArsI GACNNNNNNTTYG 2 cut(s) 341, 373
AseI ATTAAT 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 349
AsuII TTCGAA 1 cut(s) 223
AvaII GGWCC 1 cut(s) 349
BccI CCATC 1 cut(s) 236
BciVI GTATCC 1 cut(s) 184
BfaI CTAG 1 cut(s) 200
BfrI CTTAAG 1 cut(s) 149
BfuI GTATCC 1 cut(s) 184
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 349
Bpu14I TTCGAA 1 cut(s) 223
BpuEI CTTGAG 2 cut(s) 89, 275
Bsc4I CCNNNNNNNGG 1 cut(s) 395
BseLI CCNNNNNNNGG 1 cut(s) 395
BseRI GAGGAG 1 cut(s) 358
BslFI GGGAC 1 cut(s) 168
BslI CCNNNNNNNGG 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 168
BsmI GAATGC 2 cut(s) 319, 368
Bsp119I TTCGAA 1 cut(s) 223
Bsp143I GATC 1 cut(s) 250
BspT104I TTCGAA 1 cut(s) 223
BspTI CTTAAG 1 cut(s) 149
BssMI GATC 1 cut(s) 250
BstAFI CTTAAG 1 cut(s) 149
BstBI TTCGAA 1 cut(s) 223
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 1 cut(s) 145
BsuI GTATCC 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 349
CviAII CATG 3 cut(s) 239, 248, 346
CviJI RGCY 5 cut(s) 67, 148, 290, 297, 456
CviKI_1 RGCY 5 cut(s) 67, 148, 290, 297, 456
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
Eco32I GATATC 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 349
EcoRV GATATC 1 cut(s) 33
FaeI CATG 3 cut(s) 242, 251, 349
FaiI YATR 7 cut(s) 77, 173, 240, 249, 347, 396, 413
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FaqI GGGAC 1 cut(s) 168
FatI CATG 3 cut(s) 238, 247, 345
FspBI CTAG 1 cut(s) 200
Hin1II CATG 3 cut(s) 242, 251, 349
HincII GTYRAC 1 cut(s) 308
HindII GTYRAC 1 cut(s) 308
HindIII AAGCTT 2 cut(s) 65, 295
HinfI GANTC 1 cut(s) 376
Hpy166II GTNNAC 1 cut(s) 308
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 3 cut(s) 200, 254, 329
Hpy8I GTNNAC 1 cut(s) 308
HpyCH4V TGCA 6 cut(s) 54, 88, 95, 139, 210, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 145
Hsp92II CATG 3 cut(s) 242, 251, 349
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 2 cut(s) 295, 371
LpnPI CCDG 2 cut(s) 149, 227
MaeI CTAG 1 cut(s) 200
MaeIII GTNAC 1 cut(s) 20
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 1 cut(s) 113
MluCI AATT 6 cut(s) 78, 180, 282, 423, 432, 440
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 6 cut(s) 64, 173, 250, 264, 379, 439
MseI TTAA 4 cut(s) 150, 167, 179, 279
MspCI CTTAAG 1 cut(s) 149
Mva1269I GAATGC 2 cut(s) 319, 368
MwoI GCNNNNNNNGC 1 cut(s) 145
NdeII GATC 1 cut(s) 250
NlaIII CATG 3 cut(s) 242, 251, 349
NmuCI GTSAC 1 cut(s) 20
NspV TTCGAA 1 cut(s) 223
PctI GAATGC 2 cut(s) 319, 368
PfeI GAWTC 1 cut(s) 376
PshBI ATTAAT 1 cut(s) 179
PspPI GGNCC 1 cut(s) 349
SaqAI TTAA 4 cut(s) 150, 167, 179, 279
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 1 cut(s) 349
SetI ASST 9 cut(s) 42, 69, 150, 275, 292, 299, 324, 450, 458
SfuI TTCGAA 1 cut(s) 223
SinI GGWCC 1 cut(s) 349
SmlI CTYRAG 3 cut(s) 68, 149, 254
SmoI CTYRAG 3 cut(s) 68, 149, 254
Sse9I AATT 6 cut(s) 78, 180, 282, 423, 432, 440
SspMI CTAG 1 cut(s) 200
TaqI TCGA 2 cut(s) 184, 223
TasI AATT 6 cut(s) 78, 180, 282, 423, 432, 440
TfiI GAWTC 1 cut(s) 376
Tru1I TTAA 4 cut(s) 150, 167, 179, 279
Tru9I TTAA 4 cut(s) 150, 167, 179, 279
TseFI GTSAC 1 cut(s) 20
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 368
Vha464I CTTAAG 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 349
VspI ATTAAT 1 cut(s) 179
XbaI TCTAGA 1 cut(s) 199
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.