FvH4_3g37001

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Reverse (-)
31732452 .. 31737498
5047 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37001.t1

Sequence Viewer

Length: 2418 bp
ATGAATATTCTCGTTTGGAACTGCCAAGGCATCGTCAACAGACGAACTCGCCATGCCCTCAAACTTCTTGTTCAGTCTCATCAGATACGGGGCAGCGCCACCAGTCTTGGGATCTTTTGCGCTCTCTGTGCAGCAGGGATTAAGAAAGATGGGTTGTTGCTGGTGATTTTAATGAAATTCTGGGATTGGGAGATAAAGAAGTCGGGTGGTCGGATTCGGGATGTGGATCAGATTACTACTTTTTGGAGTTGCTTAACGGACTGCAATCTCGATGACATGGGTGCAGTTGGAGGTTGGTTTACCTGGAGTAATTCCAATATAAAGAAGCGTTTGGATCGGGGAGTTTGTACTCCGGCATGGCTGATGAGTTTTAGTCACTCCCGGATTCATGCTTTACCTCCTAGTAGATCAGACCATGTTCCACTTCTCTTGGAAGTGCGTACAAATAGACCAGCTTGTGATCAAGAGAAGCGGTCATATCGATTTGAGGAGATTTGGTGCTCTGATCCAGACTTCCCTCGAATTTTGGAACGCGCTTGGACTCCTCCTCAGGCTGGGAGTCCAATGGTGCAGCTATGTCGAAAAATTAAGGACTCTGGTAAGTCCTTGCTTCAATGGGATCGGTCAGTGTTTAAGGGCAGAAGAAAGGAGTTGGAGGAGGTTCGTCGTTCTCTTCATGTTATTATGCAGAAACCATTTGATGAGAATGATCGAGATGAGAAGGTTCAGCTATCTCACCGTTTGAATGAGTTAATGTCATCAGATGAGATTTATTGGCGGCAGAGATCTCGAGCTATTTGGCTGAAGGATTGGGATCGTAATTCCAAGTTCTTCCATCGTAGTGCTTCAAATAAGAGGAAGAAGAATAAGTTGAAAGGTTTGTTTGATAGGTATGGTGTGTGGCAGAATACACCCCAAGGCATTGAGAATATCCTCACGGCCCCATATCGGTTGGAAGAGGTGAAAGAGGCTCTATTTAAAATGCATCCCTCTAAAGCTCCTGGCCCGGATGGAATGTCGCATTTCTTCTTTCAGAAGTATTGGGATCTTGTTGGTGTCGAGGTGAGTAATGCAGTTATCTCCTTCCTTACTACTAAAGATATGCCTCATGATTTGAATTATACGAATGTGGAGCTCATTCCTAAAGTGAAAGAGGCTATATATTTCCCTCACAGTAACTTTTGGGAAGCCGAATTAGGTACTTCTCCTTCTTATGCTTGGCGAAGCATTATTGATGGGAGGGATGTGTTGAGACAGGGTGTTTGTCGGCAAATTGGAGATGGCCAACGTACCAACATCTGGAGCTCTTTCCTGCCTCTATTGTCAATAAGATTCTGGCGCTTCCAATTAGTTCAAGAGAGCATCAGGATAGATGGATTTAGAGTGAAGATAAACTGGGTTCCTGGTAAAGTCAAGGTGTGTGATTGGAAAGCTGCCTCTAATATTCTTCCCACAAGGAGTAGGCTTAGTGAACGGGGTGTGGATATTGACACCCAATGCCCTTTCTGTGAGGAGGAGGTGGAGTCACCTATTCATGCTCTAAGAGATTGTTCCCATGCAACTGAGTGCCTTCAATTAGCACAAGTTCCATTGCTGCCGCATACTACCTCAGTATATGACTGGTTAGTCTCTGCTCTATCTGTTCCTACTATATTTCCAGTTTTGCTTATGATTCTATGGGCAATAAGGGGTAATAGAATCAGAAGGTTTGGGAGACTTAATATTGATGCTGCCTTCAATCCAAATACTGGAAGAGTAGGGTTGGGAGGAGTTTTCCGTGATCATGAAGGTTATTGTCTAGGAGCTTTCACCAAGTTCATTGTGTCTGCCAGCTCTCCTCAACATAGTGAGCTCCTTGCAGTTCTTAAAGGTGTTGGATGGGCGCAAGTACATCATCTGCTGCCACTGGTTGTGGAAACAGATTGTCAAGTCCTAGTGAAGGCTGTTCAATCAAATTCGATGGATTACTCTAGTATTGGCTTTCTTCTATCTGATTTGCGAGAGAGTCTTCGCCTTGCTTCTAATGCTAGGTTGATTTTTGTTAAAAGAGAAGCTAATTCAGTAGCTCATGCTCTAGGTCAGGTTGCTCTATTTGCTCAGATGAACACAGGTATTTCTATTGTGCGTGCGGACGTCCCTCTTTTCGCTACTGTACGACACCAGCGAGGGCACGCCTCCACCCCAGCGGACTACAGCAGCTTTCCCGACCACTTTCCATCCCTGGCAAGTCCGCCGAATTCCAGTTTTCCGGTCAGATTGACTTTGTTTGAAGTTTTGGGTGATCTGGCCGGAAAACTGGAATTCGGAGGACTCGCCGGGGAGGGAAAATGGTCGGGGAAGCTGCTGGAGTCCGCTGGGGTGGAGGCGCGCCCTCGCCGGCGCCGTACAGTGGCGAACGGAGGGAAATCTGCACCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

806

Amino Acids

91.35

Weight (kDa)

9.43

Isoelectric Point (pI)

47.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 465 - 522 8.1e-10 zinc-binding in reverse transcriptase
RVT_3 PF13456 574 - 694 2.7e-20 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1625
AatII GACGTC 1 cut(s) 2136
AccB1I GGYRCC 1 cut(s) 2379
AccB7I CCANNNNNTGG 2 cut(s) 1299, 1748
AccII CGCG 2 cut(s) 534, 2368
AciI CCGC 7 cut(s) 472, 778, 1598, 2129, 2186, 2231, 2352
AclWI GGATC 7 cut(s) 119, 234, 342, 500, 627, 822, 1053
AcoI YGGCCR 2 cut(s) 1282, 2286
AcsI RAATTY 5 cut(s) 176, 522, 1954, 2236, 2300
AcuI CTGAAG 1 cut(s) 824
AcyI GRCGYC 2 cut(s) 2133, 2380
AfaI GTAC 7 cut(s) 349, 442, 1201, 1291, 1890, 2154, 2386
AfiI CCNNNNNNNGG 7 cut(s) 108, 554, 948, 1299, 1748, 1939, 2389
AjnI CCWGG 4 cut(s) 302, 1000, 1402, 2220
Alw21I GWGCWC 4 cut(s) 503, 1137, 1307, 1854
Alw26I GTCTC 4 cut(s) 81, 1246, 1633, 1708
AlwI GGATC 7 cut(s) 119, 234, 342, 500, 627, 822, 1053
Ama87I CYCGRG 1 cut(s) 789
AoxI GGCC 4 cut(s) 939, 1003, 1282, 2286
ApeKI GCWGC 9 cut(s) 93, 131, 571, 1433, 1594, 1730, 1900, 2196, 2341
ApoI RAATTY 5 cut(s) 176, 522, 1954, 2236, 2300
ArsI GACNNNNNNTTYG 2 cut(s) 1245, 1277
AscI GGCGCGCC 1 cut(s) 2366
AspLEI GCGC 8 cut(s) 98, 122, 536, 1341, 1885, 2368, 2370, 2382
AspS9I GGNCC 2 cut(s) 940, 1004
AsuC2I CCSGG 3 cut(s) 382, 1007, 2317
AsuHPI GGTGA 7 cut(s) 175, 728, 973, 1075, 1518, 1801, 2291
AvaI CYCGRG 1 cut(s) 789
AxyI CCTNAGG 1 cut(s) 549
BaeGI GKGCMC 1 cut(s) 2172
BalI TGGCCA 1 cut(s) 1284
BanI GGYRCC 1 cut(s) 2379
BanII GRGCYC 3 cut(s) 1137, 1307, 1854
BarI GAAGNNNNNNTAC 2 cut(s) 1192, 1224
BbsI GAAGAC 1 cut(s) 2000
Bbv12I GWGCWC 4 cut(s) 503, 1137, 1307, 1854
BbvI GCAGC 9 cut(s) 105, 143, 583, 1420, 1581, 1717, 1887, 2208, 2328
BccI CCATC 9 cut(s) 143, 843, 1004, 1229, 1274, 1367, 1872, 1954, 2224
BceAI ACGGC 2 cut(s) 954, 2367
BcgI CGANNNNNNTGC 4 cut(s) 560, 594, 770, 804
BciT130I CCWGG 4 cut(s) 304, 1002, 1404, 2222
BclI TGATCA 2 cut(s) 460, 1780
BcnI CCSGG 3 cut(s) 382, 1007, 2317
BcoDI GTCTC 4 cut(s) 81, 1246, 1633, 1708
BfaI CTAG 6 cut(s) 402, 1799, 1934, 1971, 2028, 2075
BfmI CTRYAG 1 cut(s) 2191
BfoI RGCGCY 3 cut(s) 99, 1342, 2383
BglII AGATCT 1 cut(s) 785
Bme1390I CCNGG 7 cut(s) 304, 382, 1002, 1007, 1404, 2222, 2317
BmeT110I CYCGRG 1 cut(s) 789
BmgT120I GGNCC 2 cut(s) 940, 1004
BmiI GGNNCC 3 cut(s) 942, 1401, 2381
BmrFI CCNGG 7 cut(s) 304, 382, 1002, 1007, 1404, 2222, 2317
BmrI ACTGGG 1 cut(s) 1405
BmsI GCATC 4 cut(s) 39, 994, 1371, 1717
BmuI ACTGGG 1 cut(s) 1405
BpiI GAAGAC 1 cut(s) 2000
BpmI CTGGAG 3 cut(s) 325, 1321, 2366
BpuMI CCSGG 3 cut(s) 382, 1007, 2317
Bsa29I ATCGAT 1 cut(s) 481
BsaBI GATNNNNATC 2 cut(s) 225, 813
BsaHI GRCGYC 2 cut(s) 2133, 2380
BsaJI CCNNGG 4 cut(s) 25, 916, 2220, 2316
BsaWI WCCGGW 1 cut(s) 2248
BsaXI ACNNNNNCTCC 4 cut(s) 482, 512, 1508, 1538
Bsc4I CCNNNNNNNGG 7 cut(s) 108, 554, 948, 1299, 1748, 1939, 2389
Bse118I RCCGGY 1 cut(s) 2376
Bse1I ACTGG 8 cut(s) 102, 1400, 1625, 1658, 1753, 1911, 2241, 2301
Bse21I CCTNAGG 1 cut(s) 549
Bse3DI GCAATG 1 cut(s) 1589
Bse8I GATNNNNATC 2 cut(s) 225, 813
BseBI CCWGG 4 cut(s) 304, 1002, 1404, 2222
BseCI ATCGAT 1 cut(s) 481
BseDI CCNNGG 4 cut(s) 25, 916, 2220, 2316
BseGI GGATG 6 cut(s) 226, 985, 1015, 1249, 1883, 2216
BseJI GATNNNNATC 2 cut(s) 225, 813
BseLI CCNNNNNNNGG 7 cut(s) 108, 554, 948, 1299, 1748, 1939, 2389
BseMI GCAATG 1 cut(s) 1589
BseMII CTCAG 4 cut(s) 563, 1554, 1623, 2111
BseNI ACTGG 8 cut(s) 102, 1400, 1625, 1658, 1753, 1911, 2241, 2301
BsePI GCGCGC 1 cut(s) 2366
BseRI GAGGAG 8 cut(s) 503, 534, 537, 671, 1526, 1529, 1782, 1827
BseSI GKGCMC 1 cut(s) 2172
BseXI GCAGC 9 cut(s) 105, 143, 583, 1420, 1581, 1717, 1887, 2208, 2328
BseYI CCCAGC 3 cut(s) 554, 2182, 2354
BsgI GTGCAG 4 cut(s) 150, 303, 590, 2394
Bsh1236I CGCG 2 cut(s) 534, 2368
BshFI GGCC 4 cut(s) 941, 1005, 1284, 2288
BshNI GGYRCC 1 cut(s) 2379
BshVI ATCGAT 1 cut(s) 481
BsiHKAI GWGCWC 4 cut(s) 503, 1137, 1307, 1854
BsiHKCI CYCGRG 1 cut(s) 789
BsiSI CCGG 7 cut(s) 353, 382, 1007, 2249, 2289, 2316, 2377
BslFI GGGAC 1 cut(s) 2120
BslI CCNNNNNNNGG 7 cut(s) 108, 554, 948, 1299, 1748, 1939, 2389
BsmAI GTCTC 4 cut(s) 81, 1246, 1633, 1708
BsmFI GGGAC 1 cut(s) 2120
BsnI GGCC 4 cut(s) 941, 1005, 1284, 2288
BsoBI CYCGRG 1 cut(s) 789
Bsp1286I GDGCHC 5 cut(s) 503, 1137, 1307, 1854, 2172
BspACI CCGC 7 cut(s) 472, 778, 1598, 2129, 2186, 2231, 2352
BspANI GGCC 4 cut(s) 941, 1005, 1284, 2288
BspCNI CTCAG 4 cut(s) 562, 1555, 1622, 2110
BspDI ATCGAT 1 cut(s) 481
BspFNI CGCG 2 cut(s) 534, 2368
BspHI TCATGA 2 cut(s) 1108, 1783
BspLI GGNNCC 3 cut(s) 942, 1401, 2381
BspPI GGATC 7 cut(s) 119, 234, 342, 500, 627, 822, 1053
BspT107I GGYRCC 1 cut(s) 2379
BsrDI GCAATG 1 cut(s) 1589
BsrFI RCCGGY 1 cut(s) 2376
BsrI ACTGG 8 cut(s) 102, 1400, 1625, 1658, 1753, 1911, 2241, 2301
BssAI RCCGGY 1 cut(s) 2376
BssECI CCNNGG 4 cut(s) 25, 916, 2220, 2316
BssHII GCGCGC 1 cut(s) 2366
BssNI GRCGYC 2 cut(s) 2133, 2380
BssT1I CCWWGG 2 cut(s) 25, 916
Bst2UI CCWGG 4 cut(s) 304, 1002, 1404, 2222
Bst4CI ACNGT 4 cut(s) 740, 1175, 2152, 2389
Bst6I CTCTTC 3 cut(s) 678, 951, 1747
BstACI GRCGYC 2 cut(s) 2133, 2380
BstC8I GCNNGC 5 cut(s) 1831, 2127, 2172, 2368, 2378
BstDEI CTNAG 6 cut(s) 549, 1466, 1541, 1563, 1609, 2097
BstENI CCTNNNNNAGG 1 cut(s) 1937
BstF5I GGATG 6 cut(s) 226, 985, 1015, 1249, 1883, 2216
BstFNI CGCG 2 cut(s) 534, 2368
BstH2I RGCGCY 3 cut(s) 99, 1342, 2383
BstHHI GCGC 8 cut(s) 98, 122, 536, 1341, 1885, 2368, 2370, 2382
BstMAI GTCTC 4 cut(s) 81, 1246, 1633, 1708
BstMWI GCNNNNNNNGC 3 cut(s) 128, 2024, 2093
BstNI CCWGG 4 cut(s) 304, 1002, 1404, 2222
BstSCI CCNGG 7 cut(s) 302, 380, 1000, 1005, 1402, 2220, 2315
BstSFI CTRYAG 1 cut(s) 2191
BstSLI GKGCMC 1 cut(s) 2172
BstUI CGCG 2 cut(s) 534, 2368
BstV1I GCAGC 9 cut(s) 105, 143, 583, 1420, 1581, 1717, 1887, 2208, 2328
BstV2I GAAGAC 1 cut(s) 2000
BstX2I RGATCY 3 cut(s) 111, 785, 1045
BstYI RGATCY 3 cut(s) 111, 785, 1045
Bsu15I ATCGAT 1 cut(s) 481
Bsu36I CCTNAGG 1 cut(s) 549
BsuRI GGCC 4 cut(s) 941, 1005, 1284, 2288
BsuTUI ATCGAT 1 cut(s) 481
BtsCI GGATG 6 cut(s) 226, 985, 1015, 1249, 1883, 2216
BtsIMutI CAGTG 3 cut(s) 633, 1904, 2394
Cac8I GCNNGC 5 cut(s) 1831, 2127, 2172, 2368, 2378
CciI TCATGA 2 cut(s) 1108, 1783
CfoI GCGC 8 cut(s) 98, 122, 536, 1341, 1885, 2368, 2370, 2382
Cfr10I RCCGGY 1 cut(s) 2376
Cfr13I GGNCC 2 cut(s) 940, 1004
ClaI ATCGAT 1 cut(s) 481
Csp6I GTAC 7 cut(s) 348, 441, 1200, 1290, 1889, 2153, 2385
CspCI CAANNNNNGTGG 4 cut(s) 88, 123, 411, 446
CviQI GTAC 7 cut(s) 348, 441, 1200, 1290, 1889, 2153, 2385
DdeI CTNAG 6 cut(s) 549, 1466, 1541, 1563, 1609, 2097
DinI GGCGCC 1 cut(s) 2381
DraI TTTAAA 1 cut(s) 979
DrdI GACNNNNNNGTC 1 cut(s) 1625
DseDI GACNNNNNNGTC 1 cut(s) 1625
EaeI YGGCCR 2 cut(s) 1282, 2286
Eam1104I CTCTTC 3 cut(s) 678, 951, 1747
EarI CTCTTC 3 cut(s) 678, 951, 1747
EciI GGCGGA 1 cut(s) 2220
Ecl136II GAGCTC 3 cut(s) 1135, 1305, 1852
Eco130I CCWWGG 2 cut(s) 25, 916
Eco24I GRGCYC 3 cut(s) 1137, 1307, 1854
Eco53kI GAGCTC 3 cut(s) 1135, 1305, 1852
Eco57I CTGAAG 1 cut(s) 824
Eco81I CCTNAGG 1 cut(s) 549
Eco88I CYCGRG 1 cut(s) 789
EcoICRI GAGCTC 3 cut(s) 1135, 1305, 1852
EcoNI CCTNNNNNAGG 1 cut(s) 1937
EcoRI GAATTC 2 cut(s) 2236, 2300
EcoRII CCWGG 4 cut(s) 302, 1000, 1402, 2220
EcoT14I CCWWGG 2 cut(s) 25, 916
EcoT22I ATGCAT 1 cut(s) 987
EcoT38I GRGCYC 3 cut(s) 1137, 1307, 1854
EgeI GGCGCC 1 cut(s) 2381
EheI GGCGCC 1 cut(s) 2381
ErhI CCWWGG 2 cut(s) 25, 916
FaqI GGGAC 1 cut(s) 2120
FbaI TGATCA 2 cut(s) 460, 1780
FokI GGATG 6 cut(s) 233, 972, 1022, 1256, 1890, 2203
FriOI GRGCYC 3 cut(s) 1137, 1307, 1854
FspBI CTAG 6 cut(s) 402, 1799, 1934, 1971, 2028, 2075
GlaI GCGC 8 cut(s) 97, 121, 535, 1340, 1884, 2367, 2369, 2381
GsaI CCCAGC 3 cut(s) 558, 2186, 2358
GsuI CTGGAG 3 cut(s) 325, 1321, 2366
HaeII RGCGCY 3 cut(s) 99, 1342, 2383
HaeIII GGCC 4 cut(s) 941, 1005, 1284, 2288
HapII CCGG 7 cut(s) 353, 382, 1007, 2249, 2289, 2316, 2377
HhaI GCGC 8 cut(s) 98, 122, 536, 1341, 1885, 2368, 2370, 2382
Hin1I GRCGYC 2 cut(s) 2133, 2380
Hin6I GCGC 8 cut(s) 96, 120, 534, 1339, 1883, 2366, 2368, 2380
HinP1I GCGC 8 cut(s) 96, 120, 534, 1339, 1883, 2366, 2368, 2380
HincII GTYRAC 1 cut(s) 37
HindII GTYRAC 1 cut(s) 37
HpaII CCGG 7 cut(s) 353, 382, 1007, 2249, 2289, 2316, 2377
HphI GGTGA 7 cut(s) 175, 728, 973, 1075, 1518, 1801, 2291
Hpy166II GTNNAC 3 cut(s) 37, 300, 1472
Hpy8I GTNNAC 3 cut(s) 37, 300, 1472
Hpy99I CGWCG 1 cut(s) 669
HpyAV CCTTC 9 cut(s) 715, 799, 1093, 1218, 1580, 1698, 1744, 1781, 1933
HpyCH4III ACNGT 4 cut(s) 740, 1175, 2152, 2389
HpyCH4IV ACGT 2 cut(s) 1288, 2133
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 2024, 2093
HpyF3I CTNAG 6 cut(s) 549, 1466, 1541, 1563, 1609, 2097
HpySE526I ACGT 2 cut(s) 1288, 2133
Hsp92I GRCGYC 2 cut(s) 2133, 2380
HspAI GCGC 8 cut(s) 96, 120, 534, 1339, 1883, 2366, 2368, 2380
KasI GGCGCC 1 cut(s) 2379
KroI GCCGGC 1 cut(s) 2376
KroNI GCCGGC 1 cut(s) 2378
Ksp22I TGATCA 2 cut(s) 460, 1780
LmnI GCTCC 5 cut(s) 1003, 1132, 1302, 1802, 1857
Lsp1109I GCAGC 9 cut(s) 105, 143, 583, 1420, 1581, 1717, 1887, 2208, 2328
LweI GCATC 4 cut(s) 39, 994, 1371, 1717
MaeI CTAG 6 cut(s) 402, 1799, 1934, 1971, 2028, 2075
MaeII ACGT 2 cut(s) 1288, 2133
MaeIII GTNAC 3 cut(s) 374, 1175, 1524
MflI RGATCY 3 cut(s) 111, 785, 1045
MhlI GDGCHC 5 cut(s) 503, 1137, 1307, 1854, 2172
MlsI TGGCCA 1 cut(s) 1284
MluNI TGGCCA 1 cut(s) 1284
Mly113I GGCGCC 1 cut(s) 2380
MlyI GAGTC 7 cut(s) 535, 568, 587, 1532, 2014, 2304, 2357
MmeI TCCRAC 5 cut(s) 191, 268, 633, 933, 1855
Mox20I TGGCCA 1 cut(s) 1284
Mph1103I ATGCAT 1 cut(s) 987
MreI CGCCGGCG 1 cut(s) 2376
MroNI GCCGGC 1 cut(s) 2376
MscI TGGCCA 1 cut(s) 1284
MslI CAYNNNNRTG 1 cut(s) 840
Msp20I TGGCCA 1 cut(s) 1284
MspA1I CMGCKG 2 cut(s) 2186, 2354
MspI CCGG 7 cut(s) 353, 382, 1007, 2249, 2289, 2316, 2377
MspR9I CCNGG 7 cut(s) 304, 382, 1002, 1007, 1404, 2222, 2317
MvaI CCWGG 4 cut(s) 304, 1002, 1404, 2222
MvnI CGCG 2 cut(s) 534, 2368
MwoI GCNNNNNNNGC 3 cut(s) 128, 2024, 2093
NaeI GCCGGC 1 cut(s) 2378
NarI GGCGCC 1 cut(s) 2380
NciI CCSGG 3 cut(s) 382, 1007, 2317
NgoMIV GCCGGC 1 cut(s) 2376
NlaIV GGNNCC 3 cut(s) 942, 1401, 2381
NmuCI GTSAC 2 cut(s) 374, 1524
NsiI ATGCAT 1 cut(s) 987
PaeR7I CTCGAG 1 cut(s) 789
PagI TCATGA 2 cut(s) 1108, 1783
PalAI GGCGCGCC 1 cut(s) 2366
PauI GCGCGC 1 cut(s) 2366
PcsI WCGNNNNNNNCGW 2 cut(s) 2161, 2380
PdiI GCCGGC 1 cut(s) 2378
PfeI GAWTC 5 cut(s) 214, 385, 1332, 1672, 1698
PflMI CCANNNNNTGG 2 cut(s) 1299, 1748
PfoI TCCNGGA 1 cut(s) 380
PleI GAGTC 7 cut(s) 535, 567, 587, 1531, 2013, 2304, 2356
PluTI GGCGCC 1 cut(s) 2383
PpsI GAGTC 7 cut(s) 535, 567, 587, 1531, 2013, 2304, 2356
Psp124BI GAGCTC 3 cut(s) 1137, 1307, 1854
Psp6I CCWGG 4 cut(s) 302, 1000, 1402, 2220
PspFI CCCAGC 3 cut(s) 554, 2182, 2354
PspGI CCWGG 4 cut(s) 302, 1000, 1402, 2220
PspN4I GGNNCC 3 cut(s) 942, 1401, 2381
PspPI GGNCC 2 cut(s) 940, 1004
PsuI RGATCY 3 cut(s) 111, 785, 1045
PteI GCGCGC 1 cut(s) 2366
RsaI GTAC 7 cut(s) 349, 442, 1201, 1291, 1890, 2154, 2386
RsaNI GTAC 7 cut(s) 348, 441, 1200, 1290, 1889, 2153, 2385
RseI CAYNNNNRTG 1 cut(s) 840
SacI GAGCTC 3 cut(s) 1137, 1307, 1854
Sau96I GGNCC 2 cut(s) 940, 1004
SchI GAGTC 7 cut(s) 535, 568, 587, 1532, 2014, 2304, 2357
ScrFI CCNGG 7 cut(s) 304, 382, 1002, 1007, 1404, 2222, 2317
SduI GDGCHC 5 cut(s) 503, 1137, 1307, 1854, 2172
SfaNI GCATC 4 cut(s) 39, 994, 1371, 1717
SfcI CTRYAG 1 cut(s) 2191
SfoI GGCGCC 1 cut(s) 2381
Sfr274I CTCGAG 1 cut(s) 789
SgrAI CRCCGGYG 1 cut(s) 2376
SgsI GGCGCGCC 1 cut(s) 2366
SlaI CTCGAG 1 cut(s) 789
SmiMI CAYNNNNRTG 1 cut(s) 840
SmlI CTYRAG 1 cut(s) 789
SmoI CTYRAG 1 cut(s) 789
SsiI CCGC 7 cut(s) 472, 778, 1598, 2129, 2186, 2231, 2352
SspDI GGCGCC 1 cut(s) 2379
SspI AATATT 3 cut(s) 7, 1444, 1723
SspMI CTAG 6 cut(s) 402, 1799, 1934, 1971, 2028, 2075
SstI GAGCTC 3 cut(s) 1137, 1307, 1854
StyD4I CCNGG 7 cut(s) 302, 380, 1000, 1005, 1402, 2220, 2315
StyI CCWWGG 2 cut(s) 25, 916
TaaI ACNGT 4 cut(s) 740, 1175, 2152, 2389
TaiI ACGT 2 cut(s) 1291, 2136
TaqI TCGA 8 cut(s) 270, 481, 520, 580, 712, 790, 1059, 1958
TaqII GACCGA 1 cut(s) 612
TatI WGTACW 2 cut(s) 347, 1888
TauI GCSGC 2 cut(s) 781, 1600
TfiI GAWTC 5 cut(s) 214, 385, 1332, 1672, 1698
TscAI CASTG 3 cut(s) 633, 1911, 2394
TseFI GTSAC 2 cut(s) 374, 1524
TseI GCWGC 9 cut(s) 93, 131, 571, 1433, 1594, 1730, 1900, 2196, 2341
Tsp45I GTSAC 2 cut(s) 374, 1524
TspDTI ATGAA 8 cut(s) 17, 188, 377, 665, 1523, 1800, 1807, 2117
TspGWI ACGGA 3 cut(s) 272, 1766, 2412
TspRI CASTG 3 cut(s) 633, 1911, 2394
Van91I CCANNNNNTGG 2 cut(s) 1299, 1748
XagI CCTNNNNNAGG 1 cut(s) 1937
XapI RAATTY 5 cut(s) 176, 522, 1954, 2236, 2300
XhoI CTCGAG 1 cut(s) 789
XspI CTAG 6 cut(s) 402, 1799, 1934, 1971, 2028, 2075
ZraI GACGTC 1 cut(s) 2134
Zsp2I ATGCAT 1 cut(s) 987
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.