FvH4_7g25551

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000118
Physical Location & Seq
Forward (+)
19472013 .. 19476092
4080 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g25551.t1

Sequence Viewer

Length: 642 bp
ATGACGGCGCGCCTCCACCCCAGTGGACTTCAACAGCGTCCCCGATCACTTTCCCTCCCCGGTGAGTCCGCCGAATTCCAGTTTCCGGCGAGATCGACTTTATTTGAAATTTTGGGTGATCTCGCCGGAAAACTGGAATTCGGCGGACTCGCCGGAGAGGGAAATTTCTATGACTGGATTCTCACGACCAATGACGTTGACCGGGCTCCGGGGGTCGTTGATCAGACTCCAATGAAAGCTAGGGGATCTATTAGGGACAGTATGGGTCTATTGGGGGCAGAGGGTCTACTGGGAGCAGTAGGAGGGTCTACTAGGAGCAGTAAAAGGGTCTACTGGGAGCAGCAATATGCATGGGGTCTGTCCGGAAGTCTATTAGGGGTAGTAGGAGGATCTACTGGGGACAGTAAGAGGGCGGACTTGATCGTTGGGGAAGGAACGTCGGATACGTCACCGGCGACGAAGAGTAGGTCAGTGCGATGTGGCGGAGCTTGGCATGATCTTCGGCTTCGGAGGAAGGGAGGGAGGACTCGATGTGGGAAATCAGGTGTTGATGCAGTTGTGATTGGGAGGTGGAGTCGTTGTGGCTTTGCCGGAGCTCCAGCGGCAACGCTGAGCTTCACAGATCTGAAGGCTTCGGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

22.39

Weight (kDa)

9.66

Isoelectric Point (pI)

42.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 286, 308, 330
AccII CGCG 1 cut(s) 10
AccIII TCCGGA 1 cut(s) 362
AciI CCGC 5 cut(s) 69, 144, 413, 483, 602
AclWI GGATC 2 cut(s) 253, 397
AcsI RAATTY 4 cut(s) 74, 108, 137, 163
AfiI CCNNNNNNNGG 2 cut(s) 85, 208
AgsI TTSAA 2 cut(s) 32, 107
AleI CACNNNNGTG 1 cut(s) 21
AluBI AGCT 4 cut(s) 239, 488, 596, 615
AluI AGCT 4 cut(s) 239, 488, 596, 615
Alw21I GWGCWC 1 cut(s) 598
AlwI GGATC 2 cut(s) 253, 397
Aor13HI TCCGGA 1 cut(s) 362
ApeKI GCWGC 1 cut(s) 340
ApoI RAATTY 4 cut(s) 74, 108, 137, 163
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AscI GGCGCGCC 1 cut(s) 8
AspLEI GCGC 2 cut(s) 10, 12
AsuC2I CCSGG 3 cut(s) 60, 203, 210
AsuHPI GGTGA 3 cut(s) 74, 128, 441
BanII GRGCYC 2 cut(s) 208, 598
Bbv12I GWGCWC 1 cut(s) 598
BbvI GCAGC 1 cut(s) 352
BceAI ACGGC 1 cut(s) 21
BcgI CGANNNNNNTGC 2 cut(s) 482, 516
BciVI GTATCC 1 cut(s) 436
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 3 cut(s) 60, 203, 210
BfaI CTAG 2 cut(s) 240, 312
BfuI GTATCC 1 cut(s) 436
BglII AGATCT 1 cut(s) 622
BisI GCNGC 2 cut(s) 341, 603
BlpI GCTNAGC 1 cut(s) 611
BlsI GCNGC 2 cut(s) 342, 604
Bme1390I CCNGG 3 cut(s) 60, 203, 210
BmiI GGNNCC 1 cut(s) 207
BmrFI CCNGG 3 cut(s) 60, 203, 210
BmrI ACTGGG 4 cut(s) 15, 299, 343, 405
BmsI GCATC 1 cut(s) 541
BmuI ACTGGG 4 cut(s) 15, 299, 343, 405
BpmI CTGGAG 1 cut(s) 582
Bpu1102I GCTNAGC 1 cut(s) 611
BpuMI CCSGG 3 cut(s) 60, 203, 210
BsaJI CCNNGG 2 cut(s) 58, 209
BsaWI WCCGGW 1 cut(s) 362
BsaXI ACNNNNNCTCC 6 cut(s) 39, 69, 559, 565, 589, 595
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 208
Bse118I RCCGGY 1 cut(s) 451
Bse1I ACTGG 7 cut(s) 21, 79, 138, 179, 294, 338, 400
BseAI TCCGGA 1 cut(s) 362
BseDI CCNNGG 2 cut(s) 58, 209
BseLI CCNNNNNNNGG 2 cut(s) 85, 208
BseMII CTCAG 1 cut(s) 602
BseNI ACTGG 7 cut(s) 21, 79, 138, 179, 294, 338, 400
BsePI GCGCGC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 352
Bsh1236I CGCG 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 598
BsiSI CCGG 9 cut(s) 60, 86, 126, 153, 202, 209, 363, 452, 591
BslFI GGGAC 3 cut(s) 24, 269, 413
BslI CCNNNNNNNGG 2 cut(s) 85, 208
BsmFI GGGAC 3 cut(s) 24, 269, 413
Bsp1286I GDGCHC 2 cut(s) 208, 598
Bsp13I TCCGGA 1 cut(s) 362
Bsp143I GATC 9 cut(s) 44, 92, 118, 220, 245, 389, 420, 496, 622
Bsp1720I GCTNAGC 1 cut(s) 611
BspACI CCGC 5 cut(s) 69, 144, 413, 483, 602
BspCNI CTCAG 1 cut(s) 603
BspEI TCCGGA 1 cut(s) 362
BspFNI CGCG 1 cut(s) 10
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 2 cut(s) 253, 397
BsrFI RCCGGY 1 cut(s) 451
BsrI ACTGG 7 cut(s) 21, 79, 138, 179, 294, 338, 400
BssAI RCCGGY 1 cut(s) 451
BssECI CCNNGG 2 cut(s) 58, 209
BssHII GCGCGC 1 cut(s) 8
BssMI GATC 9 cut(s) 44, 92, 118, 220, 245, 389, 420, 496, 622
Bst4CI ACNGT 2 cut(s) 260, 404
Bst6I CTCTTC 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 1 cut(s) 611
BstFNI CGCG 1 cut(s) 10
BstHHI GCGC 2 cut(s) 10, 12
BstKTI GATC 9 cut(s) 47, 95, 121, 223, 248, 392, 423, 499, 625
BstMBI GATC 9 cut(s) 44, 92, 118, 220, 245, 389, 420, 496, 622
BstMWI GCNNNNNNNGC 1 cut(s) 602
BstSCI CCNGG 3 cut(s) 58, 201, 208
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 352
BstX2I RGATCY 3 cut(s) 245, 389, 622
BstXI CCANNNNNNTGG 1 cut(s) 23
BstYI RGATCY 3 cut(s) 245, 389, 622
BsuI GTATCC 1 cut(s) 436
BtgZI GCGATG 1 cut(s) 490
BtsIMutI CAGTG 2 cut(s) 28, 477
Cac8I GCNNGC 1 cut(s) 10
CfoI GCGC 2 cut(s) 10, 12
Cfr10I RCCGGY 1 cut(s) 451
CseI GACGC 1 cut(s) 26
CviAII CATG 2 cut(s) 351, 494
CviJI RGCY 9 cut(s) 206, 239, 488, 505, 585, 596, 615, 632, 639
CviKI_1 RGCY 9 cut(s) 206, 239, 488, 505, 585, 596, 615, 632, 639
DdeI CTNAG 1 cut(s) 611
DpnI GATC 9 cut(s) 46, 94, 120, 222, 247, 391, 422, 498, 624
DpnII GATC 9 cut(s) 44, 92, 118, 220, 245, 389, 420, 496, 622
Eam1104I CTCTTC 1 cut(s) 455
EarI CTCTTC 1 cut(s) 455
EciI GGCGGA 4 cut(s) 58, 159, 428, 498
Ecl136II GAGCTC 1 cut(s) 596
Eco24I GRGCYC 2 cut(s) 208, 598
Eco53kI GAGCTC 1 cut(s) 596
EcoICRI GAGCTC 1 cut(s) 596
EcoRI GAATTC 2 cut(s) 74, 137
EcoT22I ATGCAT 1 cut(s) 352
EcoT38I GRGCYC 2 cut(s) 208, 598
FaeI CATG 2 cut(s) 354, 497
FaiI YATR 5 cut(s) 171, 263, 348, 352, 495
FaqI GGGAC 3 cut(s) 24, 269, 413
FatI CATG 2 cut(s) 350, 493
FbaI TGATCA 1 cut(s) 220
FblI GTMKAC 3 cut(s) 286, 308, 330
Fnu4HI GCNGC 2 cut(s) 341, 603
FriOI GRGCYC 2 cut(s) 208, 598
Fsp4HI GCNGC 2 cut(s) 341, 603
FspBI CTAG 2 cut(s) 240, 312
GlaI GCGC 2 cut(s) 9, 11
GluI GCNGC 2 cut(s) 341, 603
GsuI CTGGAG 1 cut(s) 582
HapII CCGG 9 cut(s) 60, 86, 126, 153, 202, 209, 363, 452, 591
HgaI GACGC 1 cut(s) 26
HhaI GCGC 2 cut(s) 10, 12
Hin1II CATG 2 cut(s) 354, 497
Hin6I GCGC 2 cut(s) 8, 10
HinP1I GCGC 2 cut(s) 8, 10
HincII GTYRAC 1 cut(s) 199
HindII GTYRAC 1 cut(s) 199
HinfI GANTC 6 cut(s) 65, 147, 178, 226, 526, 574
HpaII CCGG 9 cut(s) 60, 86, 126, 153, 202, 209, 363, 452, 591
HphI GGTGA 3 cut(s) 74, 128, 441
Hpy166II GTNNAC 5 cut(s) 26, 199, 287, 309, 331
Hpy188I TCNGA 4 cut(s) 225, 442, 510, 627
Hpy188III TCNNGA 2 cut(s) 184, 363
Hpy8I GTNNAC 5 cut(s) 26, 199, 287, 309, 331
Hpy99I CGWCG 2 cut(s) 442, 460
HpyAV CCTTC 3 cut(s) 425, 508, 622
HpyCH4III ACNGT 2 cut(s) 260, 404
HpyCH4IV ACGT 3 cut(s) 195, 437, 446
HpyCH4V TGCA 2 cut(s) 350, 554
HpyF10VI GCNNNNNNNGC 1 cut(s) 602
HpyF3I CTNAG 1 cut(s) 611
HpySE526I ACGT 3 cut(s) 195, 437, 446
Hsp92II CATG 2 cut(s) 354, 497
HspAI GCGC 2 cut(s) 8, 10
Kpn2I TCCGGA 1 cut(s) 362
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 9 cut(s) 44, 92, 118, 220, 245, 389, 420, 496, 622
LmnI GCTCC 7 cut(s) 211, 293, 315, 337, 485, 593, 601
Lsp1109I GCAGC 1 cut(s) 352
LweI GCATC 1 cut(s) 541
MaeI CTAG 2 cut(s) 240, 312
MaeII ACGT 3 cut(s) 195, 437, 446
MaeIII GTNAC 1 cut(s) 447
MalI GATC 9 cut(s) 46, 94, 120, 222, 247, 391, 422, 498, 624
MboI GATC 9 cut(s) 44, 92, 118, 220, 245, 389, 420, 496, 622
MboII GAAGA 2 cut(s) 472, 491
MflI RGATCY 3 cut(s) 245, 389, 622
MhlI GDGCHC 2 cut(s) 208, 598
MluCI AATT 4 cut(s) 74, 108, 137, 163
MlyI GAGTC 5 cut(s) 74, 141, 220, 520, 583
MmeI TCCRAC 1 cut(s) 420
Mph1103I ATGCAT 1 cut(s) 352
MroI TCCGGA 1 cut(s) 362
MslI CAYNNNNRTG 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 602
MspI CCGG 9 cut(s) 60, 86, 126, 153, 202, 209, 363, 452, 591
MspR9I CCNGG 3 cut(s) 60, 203, 210
MvnI CGCG 1 cut(s) 10
MwoI GCNNNNNNNGC 1 cut(s) 602
NciI CCSGG 3 cut(s) 60, 203, 210
NdeII GATC 9 cut(s) 44, 92, 118, 220, 245, 389, 420, 496, 622
NlaIII CATG 2 cut(s) 354, 497
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 447
NsiI ATGCAT 1 cut(s) 352
OliI CACNNNNGTG 1 cut(s) 21
PalAI GGCGCGCC 1 cut(s) 8
PauI GCGCGC 1 cut(s) 8
PcsI WCGNNNNNNNCGW 2 cut(s) 443, 452
PfeI GAWTC 1 cut(s) 178
PkrI GCNGC 2 cut(s) 342, 604
PleI GAGTC 5 cut(s) 73, 141, 220, 520, 582
PpsI GAGTC 5 cut(s) 73, 141, 220, 520, 582
Psp124BI GAGCTC 1 cut(s) 598
PspN4I GGNNCC 1 cut(s) 207
PsrI GAACNNNNNNTAC 2 cut(s) 427, 459
PsuI RGATCY 3 cut(s) 245, 389, 622
PteI GCGCGC 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 21
SacI GAGCTC 1 cut(s) 598
SatI GCNGC 2 cut(s) 341, 603
Sau3AI GATC 9 cut(s) 44, 92, 118, 220, 245, 389, 420, 496, 622
SchI GAGTC 5 cut(s) 74, 141, 220, 520, 583
ScrFI CCNGG 3 cut(s) 60, 203, 210
SduI GDGCHC 2 cut(s) 208, 598
SfaNI GCATC 1 cut(s) 541
SgrAI CRCCGGYG 1 cut(s) 451
SgsI GGCGCGCC 1 cut(s) 8
SmiMI CAYNNNNRTG 1 cut(s) 21
Sse9I AATT 4 cut(s) 74, 108, 137, 163
SsiI CCGC 5 cut(s) 69, 144, 413, 483, 602
SspMI CTAG 2 cut(s) 240, 312
SstI GAGCTC 1 cut(s) 598
StyD4I CCNGG 3 cut(s) 58, 201, 208
TaaI ACNGT 2 cut(s) 260, 404
TaiI ACGT 3 cut(s) 198, 440, 449
TaqI TCGA 2 cut(s) 95, 529
TasI AATT 4 cut(s) 74, 108, 137, 163
TauI GCSGC 1 cut(s) 605
TfiI GAWTC 1 cut(s) 178
TscAI CASTG 2 cut(s) 28, 477
TseFI GTSAC 1 cut(s) 447
TseI GCWGC 1 cut(s) 340
Tsp45I GTSAC 1 cut(s) 447
TspDTI ATGAA 1 cut(s) 248
TspRI CASTG 2 cut(s) 28, 477
XapI RAATTY 4 cut(s) 74, 108, 137, 163
XmiI GTMKAC 3 cut(s) 286, 308, 330
XspI CTAG 2 cut(s) 240, 312
Zsp2I ATGCAT 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.