FvH4_3g20504

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Reverse (-)
13579604 .. 13581688
2085 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20504.t1

Sequence Viewer

Length: 585 bp
ATGAGTGTGATGGAATATGAAATGAGAAAGCAGAGCAGAAGAGAGGAGGAGGAGGAAGAAGAAGAAAGAGACTTGAGAGTGAGTTCTGGCTCACATGGCACTAGTCAATACTGCCGGACTACTTTCGATTGGGTGCACGGCAGCACACGCGCCGCCCGAAGACGCGCCTCCACCCCAGCGGATTCCAGCAGCTTCCCCGACCACTTTCCATCCCCGGCGAGTCTGTCGAATTCCAATTTTCCGACCAGATTGACTTTGTTTGAAGTTTTGGGTGATCTGGCCGGAAAACTGGAATTCGGCGGACTCGCCGGAGATGGAAAGAGGTCGGGGAAGCTGCTGGAGTCCGCTAGGGTGGAGGCGCGCCCTCGCCGGTGCCGTACAGTGGCGAAAGGAGGGACATCCGCACGGTGCGGACGTCCGCACCTGATAACTGGTGGTGATGATGTTTATGGTGGCAACCACGGCAGGGGTGTGGTGGTGATGACAATGGAAAGTAAAAGAAGTTGCGTTTCACAACACATTCTGGGAGATCTACAGACGAATGTTAAGCAATGTAGCTTCCATGAGAGTAACAAAGATACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

21.4

Weight (kDa)

8.65

Isoelectric Point (pI)

67.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 418
AccB1I GGYRCC 1 cut(s) 372
AccII CGCG 3 cut(s) 150, 165, 361
AciI CCGC 7 cut(s) 153, 179, 300, 345, 402, 411, 419
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 2 cut(s) 229, 293
AcyI GRCGYC 1 cut(s) 415
AfaI GTAC 1 cut(s) 379
AfiI CCNNNNNNNGG 2 cut(s) 382, 466
AgsI TTSAA 1 cut(s) 263
AhlI ACTAGT 1 cut(s) 101
AluBI AGCT 3 cut(s) 192, 334, 558
AluI AGCT 3 cut(s) 192, 334, 558
Alw21I GWGCWC 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 63
Alw44I GTGCAC 1 cut(s) 134
AoxI GGCC 1 cut(s) 279
ApaLI GTGCAC 1 cut(s) 134
ApeKI GCWGC 3 cut(s) 141, 189, 334
ApoI RAATTY 2 cut(s) 229, 293
AscI GGCGCGCC 1 cut(s) 359
AspLEI GCGC 4 cut(s) 152, 167, 361, 363
AsuC2I CCSGG 1 cut(s) 215
AsuHPI GGTGA 3 cut(s) 284, 449, 490
BaeGI GKGCMC 1 cut(s) 138
BanI GGYRCC 1 cut(s) 372
BbsI GAAGAC 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 3 cut(s) 153, 201, 321
BccI CCATC 3 cut(s) 4, 217, 308
BceAI ACGGC 3 cut(s) 154, 360, 478
BcnI CCSGG 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 63
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 2 cut(s) 102, 348
BfmI CTRYAG 1 cut(s) 533
BglII AGATCT 1 cut(s) 529
BisI GCNGC 4 cut(s) 142, 153, 190, 335
BlsI GCNGC 4 cut(s) 143, 154, 191, 336
Bme1390I CCNGG 1 cut(s) 215
BmiI GGNNCC 1 cut(s) 374
BmrFI CCNGG 1 cut(s) 215
BpiI GAAGAC 1 cut(s) 166
BpmI CTGGAG 1 cut(s) 359
BpuEI CTTGAG 1 cut(s) 94
BpuMI CCSGG 1 cut(s) 215
BsaHI GRCGYC 1 cut(s) 415
BsaJI CCNNGG 2 cut(s) 213, 460
Bsc4I CCNNNNNNNGG 2 cut(s) 382, 466
Bse118I RCCGGY 1 cut(s) 369
Bse1I ACTGG 2 cut(s) 294, 436
Bse3DI GCAATG 1 cut(s) 557
BseDI CCNNGG 2 cut(s) 213, 460
BseGI GGATG 2 cut(s) 209, 398
BseLI CCNNNNNNNGG 2 cut(s) 382, 466
BseMI GCAATG 1 cut(s) 557
BseNI ACTGG 2 cut(s) 294, 436
BsePI GCGCGC 1 cut(s) 359
BseRI GAGGAG 3 cut(s) 59, 62, 65
BseSI GKGCMC 1 cut(s) 138
BseXI GCAGC 3 cut(s) 153, 201, 321
BseYI CCCAGC 1 cut(s) 175
Bsh1236I CGCG 3 cut(s) 150, 165, 361
BshFI GGCC 1 cut(s) 281
BshNI GGYRCC 1 cut(s) 372
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 5 cut(s) 115, 215, 282, 309, 370
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 2 cut(s) 382, 466
BsmAI GTCTC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 2 cut(s) 274, 529
BspACI CCGC 7 cut(s) 153, 179, 300, 345, 402, 411, 419
BspANI GGCC 1 cut(s) 281
BspFNI CGCG 3 cut(s) 150, 165, 361
BspLI GGNNCC 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 372
BsrDI GCAATG 1 cut(s) 557
BsrFI RCCGGY 1 cut(s) 369
BsrI ACTGG 2 cut(s) 294, 436
BssAI RCCGGY 1 cut(s) 369
BssECI CCNNGG 2 cut(s) 213, 460
BssHII GCGCGC 1 cut(s) 359
BssMI GATC 2 cut(s) 274, 529
BssNI GRCGYC 1 cut(s) 415
Bst4CI ACNGT 2 cut(s) 382, 408
Bst6I CTCTTC 1 cut(s) 34
BstACI GRCGYC 1 cut(s) 415
BstC8I GCNNGC 1 cut(s) 361
BstDSI CCRYGG 1 cut(s) 460
BstF5I GGATG 2 cut(s) 209, 398
BstFNI CGCG 3 cut(s) 150, 165, 361
BstHHI GCGC 4 cut(s) 152, 167, 361, 363
BstKTI GATC 2 cut(s) 277, 532
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 2 cut(s) 274, 529
BstMWI GCNNNNNNNGC 3 cut(s) 96, 147, 462
BstSCI CCNGG 1 cut(s) 213
BstSFI CTRYAG 1 cut(s) 533
BstSLI GKGCMC 1 cut(s) 138
BstUI CGCG 3 cut(s) 150, 165, 361
BstV1I GCAGC 3 cut(s) 153, 201, 321
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuRI GGCC 1 cut(s) 281
BtgI CCRYGG 1 cut(s) 460
BtsCI GGATG 2 cut(s) 209, 398
BtsIMutI CAGTG 1 cut(s) 387
Cac8I GCNNGC 1 cut(s) 361
CfoI GCGC 4 cut(s) 152, 167, 361, 363
Cfr10I RCCGGY 1 cut(s) 369
CseI GACGC 1 cut(s) 171
Csp6I GTAC 1 cut(s) 378
CviAII CATG 2 cut(s) 95, 563
CviJI RGCY 5 cut(s) 90, 192, 281, 334, 558
CviKI_1 RGCY 5 cut(s) 90, 192, 281, 334, 558
CviQI GTAC 1 cut(s) 378
DpnI GATC 2 cut(s) 276, 531
DpnII GATC 2 cut(s) 274, 529
EaeI YGGCCR 1 cut(s) 279
Eam1104I CTCTTC 1 cut(s) 34
EarI CTCTTC 1 cut(s) 34
EciI GGCGGA 1 cut(s) 315
EcoRI GAATTC 2 cut(s) 229, 293
FaeI CATG 2 cut(s) 98, 566
FaiI YATR 5 cut(s) 18, 96, 450, 564, 583
FaqI GGGAC 1 cut(s) 409
FatI CATG 2 cut(s) 94, 562
Fnu4HI GCNGC 4 cut(s) 142, 153, 190, 335
FokI GGATG 2 cut(s) 196, 385
Fsp4HI GCNGC 4 cut(s) 142, 153, 190, 335
FspBI CTAG 2 cut(s) 102, 348
GlaI GCGC 4 cut(s) 151, 166, 360, 362
GluI GCNGC 4 cut(s) 142, 153, 190, 335
GsaI CCCAGC 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 359
HaeIII GGCC 1 cut(s) 281
HapII CCGG 5 cut(s) 115, 215, 282, 309, 370
HgaI GACGC 1 cut(s) 171
HhaI GCGC 4 cut(s) 152, 167, 361, 363
Hin1I GRCGYC 1 cut(s) 415
Hin1II CATG 2 cut(s) 98, 566
Hin6I GCGC 4 cut(s) 150, 165, 359, 361
HinP1I GCGC 4 cut(s) 150, 165, 359, 361
HinfI GANTC 4 cut(s) 182, 220, 303, 341
HpaII CCGG 5 cut(s) 115, 215, 282, 309, 370
HphI GGTGA 3 cut(s) 284, 449, 490
Hpy166II GTNNAC 1 cut(s) 136
Hpy188I TCNGA 1 cut(s) 243
Hpy8I GTNNAC 1 cut(s) 136
HpyCH4III ACNGT 2 cut(s) 382, 408
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 1 cut(s) 136
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 147, 462
HpySE526I ACGT 1 cut(s) 415
Hsp92I GRCGYC 1 cut(s) 415
Hsp92II CATG 2 cut(s) 98, 566
HspAI GCGC 4 cut(s) 150, 165, 359, 361
Kzo9I GATC 2 cut(s) 274, 529
Lsp1109I GCAGC 3 cut(s) 153, 201, 321
MaeI CTAG 2 cut(s) 102, 348
MaeII ACGT 1 cut(s) 415
MaeIII GTNAC 1 cut(s) 569
MalI GATC 2 cut(s) 276, 531
MboI GATC 2 cut(s) 274, 529
MboII GAAGA 5 cut(s) 51, 68, 71, 74, 171
MflI RGATCY 1 cut(s) 529
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 3 cut(s) 229, 235, 293
MlyI GAGTC 3 cut(s) 229, 297, 350
MmeI TCCRAC 1 cut(s) 266
MnlI CCTC 9 cut(s) 37, 40, 43, 46, 178, 315, 349, 375, 386
MseI TTAA 1 cut(s) 546
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 5 cut(s) 115, 215, 282, 309, 370
MspR9I CCNGG 1 cut(s) 215
MvnI CGCG 3 cut(s) 150, 165, 361
MwoI GCNNNNNNNGC 3 cut(s) 96, 147, 462
NciI CCSGG 1 cut(s) 215
NdeII GATC 2 cut(s) 274, 529
NlaIII CATG 2 cut(s) 98, 566
NlaIV GGNNCC 1 cut(s) 374
PalAI GGCGCGCC 1 cut(s) 359
PauI GCGCGC 1 cut(s) 359
PcsI WCGNNNNNNNCGW 3 cut(s) 154, 373, 412
PfeI GAWTC 1 cut(s) 182
PkrI GCNGC 4 cut(s) 143, 154, 191, 336
PleI GAGTC 3 cut(s) 228, 297, 349
PpsI GAGTC 3 cut(s) 228, 297, 349
PspFI CCCAGC 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 374
PsuI RGATCY 1 cut(s) 529
PteI GCGCGC 1 cut(s) 359
RsaI GTAC 1 cut(s) 379
RsaNI GTAC 1 cut(s) 378
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 4 cut(s) 142, 153, 190, 335
Sau3AI GATC 2 cut(s) 274, 529
SchI GAGTC 3 cut(s) 229, 297, 350
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 1 cut(s) 138
SetI ASST 6 cut(s) 194, 326, 336, 418, 426, 560
SfcI CTRYAG 1 cut(s) 533
SgrAI CRCCGGYG 1 cut(s) 369
SgsI GGCGCGCC 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
SpeI ACTAGT 1 cut(s) 101
Sse9I AATT 3 cut(s) 229, 235, 293
SsiI CCGC 7 cut(s) 153, 179, 300, 345, 402, 411, 419
SspMI CTAG 2 cut(s) 102, 348
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 382, 408
TaiI ACGT 1 cut(s) 418
TaqI TCGA 2 cut(s) 126, 227
TasI AATT 3 cut(s) 229, 235, 293
TauI GCSGC 1 cut(s) 155
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 1 cut(s) 387
TseI GCWGC 3 cut(s) 141, 189, 334
TspDTI ATGAA 1 cut(s) 33
TspRI CASTG 1 cut(s) 387
VneI GTGCAC 1 cut(s) 134
XapI RAATTY 2 cut(s) 229, 293
XspI CTAG 2 cut(s) 102, 348
ZraI GACGTC 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.