FvH4_2g04631

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Forward (+)
3582419 .. 3585711
3293 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g04631.t1

Sequence Viewer

Length: 561 bp
ATGGCCTTTGGAACTCTGCTTTTTCTTTTCTTCGGCGGTTCAGCTGATGCGTTTGAGAACGAGAAGGCCAAGGAGCTGAAGGGCCAGGATATGAGGTTATCTCACTATCAGAGTCCGAGGATTGATTCATCAGATTGGAGTCTGCGCGCCGAACCATTTGACCACGCACAGAGCCCACCCTTACCTAAAGCAACCAAGGCGGCAGCCTTAGGCATCAGAAGGCCTCAGATTACGTCCGTCCGTTCTCCACCCTCCGGCGCAGGCGACGGCGTGCCTCCACCCCAGAACACTCCAGCAGCGTCCCCGACCACTTTCCCTCCCCGGCGACCATACCTGAGGATTGAGGAAGACAAGAAGTCAAGAAGTAGGGATTGGGAACTGCCGGACTGGGAAGGGCATCGGCAGGAGCACGGCGACGAGAGCGACCGGCTGCAAGAGCGATCAGCGAGACCGCGAGAGGCAAGAGCGACGGCCAAGGGCCAGTCAACGGTGGGCAAAGCCGCAAAGGATGAAAGGATTTGGGGCTTTAGGCGTCAGGCGTGGGTCAGTGGTTGTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.81

Weight (kDa)

9.37

Isoelectric Point (pI)

76.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 147, 454
AciI CCGC 4 cut(s) 36, 200, 452, 501
AcoI YGGCCR 1 cut(s) 471
AcuI CTGAAG 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 532
AfiI CCNNNNNNNGG 2 cut(s) 254, 487
AhdI GACNNNNNGTC 1 cut(s) 355
AjnI CCWGG 1 cut(s) 84
AjuI GAANNNNNNNTTGG 2 cut(s) 355, 387
AluBI AGCT 2 cut(s) 44, 76
AluI AGCT 2 cut(s) 44, 76
Alw21I GWGCWC 1 cut(s) 411
Alw26I GTCTC 1 cut(s) 442
AoxI GGCC 6 cut(s) 3, 66, 82, 221, 471, 478
ApeKI GCWGC 3 cut(s) 203, 296, 430
AspLEI GCGC 3 cut(s) 147, 149, 260
AspS9I GGNCC 2 cut(s) 82, 478
AsuC2I CCSGG 1 cut(s) 322
AxyI CCTNAGG 2 cut(s) 208, 335
BanII GRGCYC 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 411
BbvI GCAGC 3 cut(s) 215, 308, 417
BceAI ACGGC 3 cut(s) 283, 427, 486
BciT130I CCWGG 1 cut(s) 86
BcnI CCSGG 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 442
BisI GCNGC 5 cut(s) 201, 204, 297, 431, 501
BlsI GCNGC 5 cut(s) 202, 205, 298, 432, 502
Bme1390I CCNGG 2 cut(s) 86, 322
BmeRI GACNNNNNGTC 1 cut(s) 355
BmgT120I GGNCC 2 cut(s) 82, 478
BmrFI CCNGG 2 cut(s) 86, 322
BmrI ACTGGG 1 cut(s) 397
BmsI GCATC 3 cut(s) 37, 222, 406
BmuI ACTGGG 1 cut(s) 397
BpiI GAAGAC 1 cut(s) 354
BplI GAGNNNNNCTC 2 cut(s) 85, 117
BpmI CTGGAG 1 cut(s) 276
BpuMI CCSGG 1 cut(s) 322
BsaHI GRCGYC 1 cut(s) 532
BsaI GGTCTC 1 cut(s) 442
BsaJI CCNNGG 5 cut(s) 69, 116, 195, 320, 474
BsaXI ACNNNNNCTCC 2 cut(s) 301, 331
Bsc4I CCNNNNNNNGG 2 cut(s) 254, 487
Bse118I RCCGGY 1 cut(s) 426
Bse1I ACTGG 2 cut(s) 392, 481
Bse21I CCTNAGG 2 cut(s) 208, 335
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 5 cut(s) 69, 116, 195, 320, 474
BseGI GGATG 1 cut(s) 514
BseLI CCNNNNNNNGG 2 cut(s) 254, 487
BseMII CTCAG 2 cut(s) 239, 326
BseNI ACTGG 2 cut(s) 392, 481
BsePI GCGCGC 1 cut(s) 145
BseXI GCAGC 3 cut(s) 215, 308, 417
Bsh1236I CGCG 2 cut(s) 147, 454
Bsh1285I CGRYCG 1 cut(s) 427
BshFI GGCC 6 cut(s) 5, 68, 84, 223, 473, 480
BsiEI CGRYCG 1 cut(s) 427
BsiHKAI GWGCWC 1 cut(s) 411
BsiSI CCGG 4 cut(s) 255, 322, 383, 427
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 2 cut(s) 254, 487
BsmAI GTCTC 1 cut(s) 442
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 6 cut(s) 5, 68, 84, 223, 473, 480
Bso31I GGTCTC 1 cut(s) 442
Bsp1286I GDGCHC 2 cut(s) 176, 411
Bsp143I GATC 1 cut(s) 440
BspACI CCGC 4 cut(s) 36, 200, 452, 501
BspANI GGCC 6 cut(s) 5, 68, 84, 223, 473, 480
BspCNI CTCAG 2 cut(s) 238, 327
BspFNI CGCG 2 cut(s) 147, 454
BspTNI GGTCTC 1 cut(s) 442
BsrFI RCCGGY 1 cut(s) 426
BsrI ACTGG 2 cut(s) 392, 481
BssAI RCCGGY 1 cut(s) 426
BssECI CCNNGG 5 cut(s) 69, 116, 195, 320, 474
BssHII GCGCGC 1 cut(s) 145
BssMI GATC 1 cut(s) 440
BssNI GRCGYC 1 cut(s) 532
BssT1I CCWWGG 3 cut(s) 69, 195, 474
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 1 cut(s) 490
BstACI GRCGYC 1 cut(s) 532
BstC8I GCNNGC 3 cut(s) 147, 262, 272
BstDEI CTNAG 3 cut(s) 208, 225, 335
BstF5I GGATG 1 cut(s) 514
BstFNI CGCG 2 cut(s) 147, 454
BstHHI GCGC 3 cut(s) 147, 149, 260
BstKTI GATC 1 cut(s) 443
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 1 cut(s) 440
BstMCI CGRYCG 1 cut(s) 427
BstMWI GCNNNNNNNGC 3 cut(s) 197, 420, 436
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 2 cut(s) 84, 320
BstUI CGCG 2 cut(s) 147, 454
BstV1I GCAGC 3 cut(s) 215, 308, 417
BstV2I GAAGAC 1 cut(s) 354
Bsu36I CCTNAGG 2 cut(s) 208, 335
BsuRI GGCC 6 cut(s) 5, 68, 84, 223, 473, 480
BtsCI GGATG 1 cut(s) 514
BtsIMutI CAGTG 1 cut(s) 553
Cac8I GCNNGC 3 cut(s) 147, 262, 272
CfoI GCGC 3 cut(s) 147, 149, 260
Cfr10I RCCGGY 1 cut(s) 426
Cfr13I GGNCC 2 cut(s) 82, 478
CseI GACGC 2 cut(s) 288, 521
DdeI CTNAG 3 cut(s) 208, 225, 335
DpnI GATC 1 cut(s) 442
DpnII GATC 1 cut(s) 440
DriI GACNNNNNGTC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 471
Eam1105I GACNNNNNGTC 1 cut(s) 355
Eco130I CCWWGG 3 cut(s) 69, 195, 474
Eco147I AGGCCT 1 cut(s) 223
Eco24I GRGCYC 1 cut(s) 176
Eco31I GGTCTC 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 98
Eco81I CCTNAGG 2 cut(s) 208, 335
EcoRII CCWGG 1 cut(s) 84
EcoT14I CCWWGG 3 cut(s) 69, 195, 474
EcoT38I GRGCYC 1 cut(s) 176
ErhI CCWWGG 3 cut(s) 69, 195, 474
FaiI YATR 2 cut(s) 92, 331
FaqI GGGAC 1 cut(s) 286
Fnu4HI GCNGC 5 cut(s) 201, 204, 297, 431, 501
FokI GGATG 1 cut(s) 521
FriOI GRGCYC 1 cut(s) 176
Fsp4HI GCNGC 5 cut(s) 201, 204, 297, 431, 501
GlaI GCGC 3 cut(s) 146, 148, 259
GluI GCNGC 5 cut(s) 201, 204, 297, 431, 501
GsuI CTGGAG 1 cut(s) 276
HaeIII GGCC 6 cut(s) 5, 68, 84, 223, 473, 480
HapII CCGG 4 cut(s) 255, 322, 383, 427
HgaI GACGC 2 cut(s) 288, 521
HhaI GCGC 3 cut(s) 147, 149, 260
Hin1I GRCGYC 1 cut(s) 532
Hin6I GCGC 3 cut(s) 145, 147, 258
HinP1I GCGC 3 cut(s) 145, 147, 258
HincII GTYRAC 1 cut(s) 486
HindII GTYRAC 1 cut(s) 486
HinfI GANTC 3 cut(s) 112, 125, 139
HpaII CCGG 4 cut(s) 255, 322, 383, 427
Hpy166II GTNNAC 1 cut(s) 486
Hpy188I TCNGA 5 cut(s) 111, 117, 133, 218, 228
Hpy188III TCNNGA 1 cut(s) 360
Hpy8I GTNNAC 1 cut(s) 486
Hpy99I CGWCG 3 cut(s) 269, 419, 472
HpyAV CCTTC 4 cut(s) 58, 73, 213, 386
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4IV ACGT 1 cut(s) 233
HpyCH4V TGCA 1 cut(s) 433
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 420, 436
HpyF3I CTNAG 3 cut(s) 208, 225, 335
HpySE526I ACGT 1 cut(s) 233
Hsp92I GRCGYC 1 cut(s) 532
HspAI GCGC 3 cut(s) 145, 147, 258
Kzo9I GATC 1 cut(s) 440
LmnI GCTCC 2 cut(s) 73, 406
Lsp1109I GCAGC 3 cut(s) 215, 308, 417
LweI GCATC 3 cut(s) 37, 222, 406
MaeII ACGT 1 cut(s) 233
MalI GATC 1 cut(s) 442
MboI GATC 1 cut(s) 440
MboII GAAGA 2 cut(s) 22, 359
MhlI GDGCHC 2 cut(s) 176, 411
MlyI GAGTC 2 cut(s) 121, 148
MnlI CCTC 9 cut(s) 87, 111, 234, 262, 285, 327, 330, 337, 451
MspA1I CMGCKG 1 cut(s) 44
MspI CCGG 4 cut(s) 255, 322, 383, 427
MspR9I CCNGG 2 cut(s) 86, 322
MvaI CCWGG 1 cut(s) 86
MvnI CGCG 2 cut(s) 147, 454
MwoI GCNNNNNNNGC 3 cut(s) 197, 420, 436
NciI CCSGG 1 cut(s) 322
NdeII GATC 1 cut(s) 440
PauI GCGCGC 1 cut(s) 145
PceI AGGCCT 1 cut(s) 223
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 5 cut(s) 202, 205, 298, 432, 502
PleI GAGTC 2 cut(s) 120, 147
PpsI GAGTC 2 cut(s) 120, 147
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspPI GGNCC 2 cut(s) 82, 478
PteI GCGCGC 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 44
SatI GCNGC 5 cut(s) 201, 204, 297, 431, 501
Sau3AI GATC 1 cut(s) 440
Sau96I GGNCC 2 cut(s) 82, 478
SchI GAGTC 2 cut(s) 121, 148
ScrFI CCNGG 2 cut(s) 86, 322
SduI GDGCHC 2 cut(s) 176, 411
SetI ASST 6 cut(s) 46, 78, 98, 187, 236, 336
SfaNI GCATC 3 cut(s) 37, 222, 406
SseBI AGGCCT 1 cut(s) 223
SsiI CCGC 4 cut(s) 36, 200, 452, 501
StuI AGGCCT 1 cut(s) 223
StyD4I CCNGG 2 cut(s) 84, 320
StyI CCWWGG 3 cut(s) 69, 195, 474
TaaI ACNGT 1 cut(s) 490
TaiI ACGT 1 cut(s) 236
TauI GCSGC 2 cut(s) 203, 503
TfiI GAWTC 1 cut(s) 125
TscAI CASTG 1 cut(s) 553
TseI GCWGC 3 cut(s) 203, 296, 430
TspDTI ATGAA 2 cut(s) 117, 525
TspGWI ACGGA 2 cut(s) 226, 230
TspRI CASTG 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.