FvH4_4g11971

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000118
Physical Location & Seq
Reverse (-)
15680728 .. 15682424
1697 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11971.t1

Sequence Viewer

Length: 603 bp
ATGGCGGGTGTGGCCGGATGGGTGGTTTCTCGTAGAGATGGTCCCCCGGCTCGAAGGATTGGCTTAAAAGGCAAGCTCTCTCGGTTGAAGGATATGGTTGTTCCATGGAGGTTTGATCCAAGTCCAAGTGCAGATCTGCATCATGGTTGGTGGTGGTGGGACTACTACGACCGGAGTCAGCCGCCACTGTCTCCTAGTGGCAAGATGAAACTTGGGTTCACTGGTTATTCCCAGTGGCATCATAGCCGGAAAGCTGATAGATATTGTAACTTATGGCTCGGCATGAGCGGTATTTTTCCGGCCGGATGTGGAGCGGATGTCCGCACCGGCCTTAAAGTGCGGACGTCCGTCCGTTCTCCACCCTTCAGCGCTGGCGATGGTGCGCCTCCACCCCATAAGACTCCAGCAGCGTCCCTGACCACTTTCCCTCCCCAGCGAGTCCATTCTTTTCCAGTTTTCCAGCGAGATCACCCAAAACTTCAAACAAAGTCGATCTCACATGAAAAATGGAAAAAAACGGACTCACCAGGGAGGGAAAGTGGTCGGGGACGCTGGTGGAGTCTTCTGGGGTGGAGGCGCGCCGTCGCCGGCACCGGAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.51

Weight (kDa)

10.96

Isoelectric Point (pI)

64.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 347
AccB1I GGYRCC 1 cut(s) 590
AccBSI CCGCTC 2 cut(s) 288, 314
AccII CGCG 1 cut(s) 579
AciI CCGC 6 cut(s) 5, 182, 288, 314, 322, 340
AclWI GGATC 1 cut(s) 110
AcoI YGGCCR 2 cut(s) 12, 300
AcuI CTGAAG 1 cut(s) 349
AcyI GRCGYC 1 cut(s) 344
AfeI AGCGCT 1 cut(s) 370
AgsI TTSAA 2 cut(s) 88, 482
AjnI CCWGG 1 cut(s) 526
AluBI AGCT 2 cut(s) 76, 254
AluI AGCT 2 cut(s) 76, 254
Alw26I GTCTC 1 cut(s) 195
AlwI GGATC 1 cut(s) 110
Aor51HI AGCGCT 1 cut(s) 370
AoxI GGCC 3 cut(s) 12, 300, 328
ApeKI GCWGC 1 cut(s) 407
AscI GGCGCGCC 1 cut(s) 577
AspLEI GCGC 4 cut(s) 371, 385, 579, 581
AspS9I GGNCC 1 cut(s) 41
AsuC2I CCSGG 1 cut(s) 47
AsuHPI GGTGA 2 cut(s) 461, 516
AvaII GGWCC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 590
BbsI GAAGAC 1 cut(s) 554
BbvI GCAGC 1 cut(s) 419
BccI CCATC 3 cut(s) 12, 32, 371
BceAI ACGGC 1 cut(s) 566
BciT130I CCWGG 1 cut(s) 528
BcnI CCSGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 195
BfaI CTAG 1 cut(s) 195
BfoI RGCGCY 1 cut(s) 372
BglII AGATCT 1 cut(s) 133
BisI GCNGC 2 cut(s) 182, 408
BlsI GCNGC 2 cut(s) 183, 409
Bme1390I CCNGG 2 cut(s) 47, 528
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 2 cut(s) 43, 592
BmrFI CCNGG 2 cut(s) 47, 528
BmrI ACTGGG 1 cut(s) 226
BmsI GCATC 2 cut(s) 148, 247
BmuI ACTGGG 1 cut(s) 226
BoxI GACNNNNGTC 2 cut(s) 174, 347
BpiI GAAGAC 1 cut(s) 554
BpmI CTGGAG 1 cut(s) 387
BpuMI CCSGG 1 cut(s) 47
BsaBI GATNNNNATC 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 344
BsaJI CCNNGG 3 cut(s) 45, 104, 527
BsaWI WCCGGW 2 cut(s) 171, 593
BsaXI ACNNNNNCTCC 6 cut(s) 303, 333, 412, 442, 523, 553
Bse118I RCCGGY 2 cut(s) 326, 587
Bse1I ACTGG 3 cut(s) 226, 232, 452
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 3 cut(s) 45, 104, 527
BseGI GGATG 3 cut(s) 23, 311, 322
BseJI GATNNNNATC 1 cut(s) 138
BseNI ACTGG 3 cut(s) 226, 232, 452
BsePI GCGCGC 1 cut(s) 577
BseX3I CGGCCG 1 cut(s) 300
BseXI GCAGC 1 cut(s) 419
BseYI CCCAGC 1 cut(s) 432
BsgI GTGCAG 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 579
Bsh1285I CGRYCG 2 cut(s) 172, 303
BshFI GGCC 3 cut(s) 14, 302, 330
BshNI GGYRCC 1 cut(s) 590
BsiEI CGRYCG 2 cut(s) 172, 303
BsiSI CCGG 9 cut(s) 15, 47, 172, 247, 299, 303, 327, 588, 594
BslFI GGGAC 4 cut(s) 27, 173, 397, 561
BsmAI GTCTC 1 cut(s) 195
BsmFI GGGAC 4 cut(s) 27, 173, 397, 561
BsnI GGCC 3 cut(s) 14, 302, 330
Bsp143I GATC 4 cut(s) 115, 133, 466, 492
Bsp19I CCATGG 1 cut(s) 104
BspACI CCGC 6 cut(s) 5, 182, 288, 314, 322, 340
BspANI GGCC 3 cut(s) 14, 302, 330
BspFNI CGCG 1 cut(s) 579
BspLI GGNNCC 2 cut(s) 43, 592
BspPI GGATC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 590
BsrBI CCGCTC 2 cut(s) 288, 314
BsrFI RCCGGY 2 cut(s) 326, 587
BsrI ACTGG 3 cut(s) 226, 232, 452
BssAI RCCGGY 2 cut(s) 326, 587
BssECI CCNNGG 3 cut(s) 45, 104, 527
BssHII GCGCGC 1 cut(s) 577
BssMI GATC 4 cut(s) 115, 133, 466, 492
BssNI GRCGYC 1 cut(s) 344
BssT1I CCWWGG 1 cut(s) 104
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 1 cut(s) 189
BstACI GRCGYC 1 cut(s) 344
BstC8I GCNNGC 4 cut(s) 74, 373, 579, 589
BstDSI CCRYGG 1 cut(s) 104
BstF5I GGATG 3 cut(s) 23, 311, 322
BstFNI CGCG 1 cut(s) 579
BstH2I RGCGCY 1 cut(s) 372
BstHHI GCGC 4 cut(s) 371, 385, 579, 581
BstKTI GATC 4 cut(s) 118, 136, 469, 495
BstMAI GTCTC 1 cut(s) 195
BstMBI GATC 4 cut(s) 115, 133, 466, 492
BstMCI CGRYCG 2 cut(s) 172, 303
BstMWI GCNNNNNNNGC 2 cut(s) 11, 69
BstNI CCWGG 1 cut(s) 528
BstPAI GACNNNNGTC 2 cut(s) 174, 347
BstSCI CCNGG 2 cut(s) 45, 526
BstUI CGCG 1 cut(s) 579
BstV1I GCAGC 1 cut(s) 419
BstV2I GAAGAC 1 cut(s) 554
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BstZI CGGCCG 1 cut(s) 300
BsuRI GGCC 3 cut(s) 14, 302, 330
BtgI CCRYGG 1 cut(s) 104
BtgZI GCGATG 1 cut(s) 390
BtsCI GGATG 3 cut(s) 23, 311, 322
BtsIMutI CAGTG 3 cut(s) 185, 219, 239
Cac8I GCNNGC 4 cut(s) 74, 373, 579, 589
CfoI GCGC 4 cut(s) 371, 385, 579, 581
Cfr10I RCCGGY 2 cut(s) 326, 587
Cfr13I GGNCC 1 cut(s) 41
CseI GACGC 2 cut(s) 399, 558
CviAII CATG 4 cut(s) 105, 143, 283, 500
DpnI GATC 4 cut(s) 117, 135, 468, 494
DpnII GATC 4 cut(s) 115, 133, 466, 492
EaeI YGGCCR 2 cut(s) 12, 300
EagI CGGCCG 1 cut(s) 300
EclXI CGGCCG 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 41
Eco47III AGCGCT 1 cut(s) 370
Eco52I CGGCCG 1 cut(s) 300
Eco57I CTGAAG 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 104
ErhI CCWWGG 1 cut(s) 104
FaeI CATG 4 cut(s) 108, 146, 286, 503
FaiI YATR 8 cut(s) 95, 106, 144, 243, 274, 284, 396, 501
FaqI GGGAC 4 cut(s) 27, 173, 397, 561
FatI CATG 4 cut(s) 104, 142, 282, 499
Fnu4HI GCNGC 2 cut(s) 182, 408
FokI GGATG 3 cut(s) 30, 318, 329
Fsp4HI GCNGC 2 cut(s) 182, 408
FspBI CTAG 1 cut(s) 195
GlaI GCGC 4 cut(s) 370, 384, 578, 580
GluI GCNGC 2 cut(s) 182, 408
GsaI CCCAGC 1 cut(s) 436
GsuI CTGGAG 1 cut(s) 387
HaeII RGCGCY 1 cut(s) 372
HaeIII GGCC 3 cut(s) 14, 302, 330
HapII CCGG 9 cut(s) 15, 47, 172, 247, 299, 303, 327, 588, 594
HgaI GACGC 2 cut(s) 399, 558
HhaI GCGC 4 cut(s) 371, 385, 579, 581
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 4 cut(s) 108, 146, 286, 503
Hin6I GCGC 4 cut(s) 369, 383, 577, 579
HinP1I GCGC 4 cut(s) 369, 383, 577, 579
HinfI GANTC 5 cut(s) 175, 400, 438, 521, 559
HpaII CCGG 9 cut(s) 15, 47, 172, 247, 299, 303, 327, 588, 594
HphI GGTGA 2 cut(s) 461, 516
Hpy166II GTNNAC 1 cut(s) 219
Hpy8I GTNNAC 1 cut(s) 219
Hpy99I CGWCG 1 cut(s) 587
HpyAV CCTTC 4 cut(s) 48, 82, 373, 591
HpyCH4III ACNGT 1 cut(s) 189
HpyCH4IV ACGT 1 cut(s) 344
HpyCH4V TGCA 2 cut(s) 131, 139
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 69
HpySE526I ACGT 1 cut(s) 344
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 4 cut(s) 108, 146, 286, 503
HspAI GCGC 4 cut(s) 369, 383, 577, 579
KroI GCCGGC 1 cut(s) 587
KroNI GCCGGC 1 cut(s) 589
Kzo9I GATC 4 cut(s) 115, 133, 466, 492
LmnI GCTCC 1 cut(s) 311
Lsp1109I GCAGC 1 cut(s) 419
LweI GCATC 2 cut(s) 148, 247
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 344
MaeIII GTNAC 1 cut(s) 266
MalI GATC 4 cut(s) 117, 135, 468, 494
MbiI CCGCTC 2 cut(s) 288, 314
MboI GATC 4 cut(s) 115, 133, 466, 492
MboII GAAGA 1 cut(s) 554
MflI RGATCY 1 cut(s) 133
MlyI GAGTC 5 cut(s) 184, 394, 447, 515, 568
MnlI CCTC 5 cut(s) 102, 396, 438, 525, 567
MroNI GCCGGC 1 cut(s) 587
MseI TTAA 2 cut(s) 65, 333
MspI CCGG 9 cut(s) 15, 47, 172, 247, 299, 303, 327, 588, 594
MspR9I CCNGG 2 cut(s) 47, 528
MvaI CCWGG 1 cut(s) 528
MvnI CGCG 1 cut(s) 579
MwoI GCNNNNNNNGC 2 cut(s) 11, 69
NaeI GCCGGC 1 cut(s) 589
NciI CCSGG 1 cut(s) 47
NcoI CCATGG 1 cut(s) 104
NdeII GATC 4 cut(s) 115, 133, 466, 492
NgoMIV GCCGGC 1 cut(s) 587
NlaIII CATG 4 cut(s) 108, 146, 286, 503
NlaIV GGNNCC 2 cut(s) 43, 592
NmeAIII GCCGAG 1 cut(s) 258
PalAI GGCGCGCC 1 cut(s) 577
PauI GCGCGC 1 cut(s) 577
PdiI GCCGGC 1 cut(s) 589
PkrI GCNGC 2 cut(s) 183, 409
PleI GAGTC 5 cut(s) 183, 394, 446, 515, 567
PpsI GAGTC 5 cut(s) 183, 394, 446, 515, 567
PshAI GACNNNNGTC 2 cut(s) 174, 347
Psp6I CCWGG 1 cut(s) 526
PspFI CCCAGC 1 cut(s) 432
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 2 cut(s) 43, 592
PspPI GGNCC 1 cut(s) 41
PsuI RGATCY 1 cut(s) 133
PteI GCGCGC 1 cut(s) 577
SaqAI TTAA 2 cut(s) 65, 333
SatI GCNGC 2 cut(s) 182, 408
Sau3AI GATC 4 cut(s) 115, 133, 466, 492
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 5 cut(s) 184, 394, 447, 515, 568
ScrFI CCNGG 2 cut(s) 47, 528
SetI ASST 5 cut(s) 78, 113, 256, 347, 602
SfaNI GCATC 2 cut(s) 148, 247
SgsI GGCGCGCC 1 cut(s) 577
SinI GGWCC 1 cut(s) 41
SsiI CCGC 6 cut(s) 5, 182, 288, 314, 322, 340
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 45, 526
StyI CCWWGG 1 cut(s) 104
TaaI ACNGT 1 cut(s) 189
TaiI ACGT 1 cut(s) 347
TaqI TCGA 2 cut(s) 52, 491
TauI GCSGC 1 cut(s) 184
Tru1I TTAA 2 cut(s) 65, 333
Tru9I TTAA 2 cut(s) 65, 333
TscAI CASTG 3 cut(s) 192, 226, 239
TseI GCWGC 1 cut(s) 407
TspDTI ATGAA 2 cut(s) 221, 516
TspGWI ACGGA 3 cut(s) 337, 341, 533
TspRI CASTG 3 cut(s) 192, 226, 239
VpaK11BI GGWCC 1 cut(s) 41
XspI CTAG 1 cut(s) 195
ZraI GACGTC 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.