RLG00000018186

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000118
Physical Location & Seq
Forward (+)
26577884 .. 26587348
9465 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018186

Sequence Viewer

Length: 903 bp
ATGGACGTAGTGCTACTCTCATCAAAACTCAGGGATTATGAGCCAGGCAATGATCCTTCACTAGCTCAGGTGTTGTGGTGTGAGAAACACTTAAAAGCGTCTTTACAACAGGTTACAGATTTGAAAGAACAACTGAATCACAAGAATAAGGAGATGCCACATCAACAGAATCAGATGAACATGCAGGCTAGTGCACCATCTTTGTACTGCTCTAGGAGGAATGGAATTATGAACAGGTTTGATCCTCAATTCCTCATAAAGAGAAAATATGGTCTTGGAGCTAAGGAAATATCTAATAGTAATGGAGTGGTTATTGGTAACTCATCTAATAATTACAGAAGCAATCTCCCCTTAGCCGCCTCCAGCTCCCAATCCATTTACCAATCTGCAGGAATGTCATTTCCAAATCCACAAGCTCATATTTCACCTGCCAGTCACAATATTTATGCTCCAATCCAGAACAATATTCATAATAGACAATGTGGTACTATTCCATCATTGTCAGCTCATTTCCGTGAAGGTGCTAAGAAGGTTGACATGTTTACTACTAGCCACAAGAGCACCCTTCATAATTTGATGGAAAATTGGATTTCTGGCTCTCAAAAAATTGAGAATGACCAGACTGGAATGAAGGATGTGATCATGTCAAGTAGTGGTAATAAAAGTACCAACTGTCACAACATAAAGTCAACTAAGAATTCTAGTTTCGAGATAACTCAGACATATAACAATATTCAGAATGACCAAACCGGAATGAAGGAGGTTACCATTTTCTCTAGTGACAATAACAACGCCGGTCACACTAATTTGAAGCAGCATGGGAATTCGAATCCTAAAATTGAGGAACAGTTGCGAAAAGGTAAAACAAAGGTTGAAGAGGTGCACGAGAGTAATTCCTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

33.59

Weight (kDa)

9.14

Isoelectric Point (pI)

53.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 436
Acc36I ACCTGC 1 cut(s) 436
AciI CCGC 1 cut(s) 357
AclWI GGATC 2 cut(s) 47, 236
AcsI RAATTY 2 cut(s) 697, 823
AfaI GTAC 3 cut(s) 206, 487, 667
AflIII ACRYGT 1 cut(s) 537
AgsI TTSAA 3 cut(s) 124, 811, 875
AjnI CCWGG 2 cut(s) 43, 896
AluBI AGCT 5 cut(s) 65, 281, 366, 416, 506
AluI AGCT 5 cut(s) 65, 281, 366, 416, 506
Alw21I GWGCWC 3 cut(s) 196, 563, 885
Alw44I GTGCAC 2 cut(s) 192, 881
AlwI GGATC 2 cut(s) 47, 236
ApaLI GTGCAC 2 cut(s) 192, 881
ApeKI GCWGC 1 cut(s) 814
ApoI RAATTY 2 cut(s) 697, 823
AsuHPI GGTGA 1 cut(s) 417
AsuII TTCGAA 1 cut(s) 827
BaeGI GKGCMC 2 cut(s) 196, 885
BauI CACGAG 1 cut(s) 884
Bbv12I GWGCWC 3 cut(s) 196, 563, 885
BbvI GCAGC 1 cut(s) 826
BccI CCATC 3 cut(s) 205, 502, 571
BciT130I CCWGG 2 cut(s) 45, 898
BclI TGATCA 1 cut(s) 639
BfaI CTAG 6 cut(s) 62, 189, 213, 549, 702, 777
BfmI CTRYAG 1 cut(s) 387
BfuAI ACCTGC 1 cut(s) 436
BisI GCNGC 2 cut(s) 357, 815
BlsI GCNGC 2 cut(s) 358, 816
Bme1390I CCNGG 2 cut(s) 45, 898
BmrFI CCNGG 2 cut(s) 45, 898
BmsI GCATC 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 346
Bpu10I CCTNAGC 3 cut(s) 66, 282, 352
Bpu14I TTCGAA 1 cut(s) 827
BsaWI WCCGGW 1 cut(s) 749
Bse118I RCCGGY 1 cut(s) 794
Bse1I ACTGG 2 cut(s) 432, 628
Bse3DI GCAATG 1 cut(s) 55
BseBI CCWGG 2 cut(s) 45, 898
BseGI GGATG 1 cut(s) 640
BseMI GCAATG 1 cut(s) 55
BseMII CTCAG 3 cut(s) 43, 80, 731
BseNI ACTGG 2 cut(s) 432, 628
BseSI GKGCMC 2 cut(s) 196, 885
BseXI GCAGC 1 cut(s) 826
BsiHKAI GWGCWC 3 cut(s) 196, 563, 885
BsiSI CCGG 2 cut(s) 750, 795
Bsp119I TTCGAA 1 cut(s) 827
Bsp1286I GDGCHC 3 cut(s) 196, 563, 885
Bsp143I GATC 3 cut(s) 52, 241, 639
BspACI CCGC 1 cut(s) 357
BspCNI CTCAG 3 cut(s) 42, 79, 730
BspMAI CTGCAG 1 cut(s) 391
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 2 cut(s) 47, 236
BspT104I TTCGAA 1 cut(s) 827
BsrDI GCAATG 1 cut(s) 55
BsrFI RCCGGY 1 cut(s) 794
BsrI ACTGG 2 cut(s) 432, 628
BssAI RCCGGY 1 cut(s) 794
BssMI GATC 3 cut(s) 52, 241, 639
BssSI CACGAG 1 cut(s) 884
Bst2BI CACGAG 1 cut(s) 884
Bst2UI CCWGG 2 cut(s) 45, 898
Bst4CI ACNGT 2 cut(s) 674, 849
Bst6I CTCTTC 1 cut(s) 870
BstBI TTCGAA 1 cut(s) 827
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 7 cut(s) 29, 66, 282, 352, 525, 693, 717
BstEII GGTNACC 1 cut(s) 763
BstF5I GGATG 1 cut(s) 640
BstKTI GATC 3 cut(s) 55, 244, 642
BstMBI GATC 3 cut(s) 52, 241, 639
BstMWI GCNNNNNNNGC 1 cut(s) 558
BstNI CCWGG 2 cut(s) 45, 898
BstNSI RCATGY 2 cut(s) 184, 541
BstPI GGTNACC 1 cut(s) 763
BstSCI CCNGG 2 cut(s) 43, 896
BstSFI CTRYAG 1 cut(s) 387
BstSLI GKGCMC 2 cut(s) 196, 885
BstV1I GCAGC 1 cut(s) 826
BtsCI GGATG 1 cut(s) 640
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 1 cut(s) 186
Cfr10I RCCGGY 1 cut(s) 794
CseI GACGC 1 cut(s) 87
Csp6I GTAC 3 cut(s) 205, 486, 666
CviAII CATG 4 cut(s) 181, 538, 643, 818
CviQI GTAC 3 cut(s) 205, 486, 666
DdeI CTNAG 7 cut(s) 29, 66, 282, 352, 525, 693, 717
DpnI GATC 3 cut(s) 54, 243, 641
DpnII GATC 3 cut(s) 52, 241, 639
Eam1104I CTCTTC 1 cut(s) 870
EarI CTCTTC 1 cut(s) 870
Eco91I GGTNACC 1 cut(s) 763
EcoO65I GGTNACC 1 cut(s) 763
EcoRI GAATTC 2 cut(s) 697, 823
EcoRII CCWGG 2 cut(s) 43, 896
FaeI CATG 4 cut(s) 184, 541, 646, 821
FatI CATG 4 cut(s) 180, 537, 642, 817
FbaI TGATCA 1 cut(s) 639
Fnu4HI GCNGC 2 cut(s) 357, 815
FokI GGATG 1 cut(s) 647
Fsp4HI GCNGC 2 cut(s) 357, 815
FspBI CTAG 6 cut(s) 62, 189, 213, 549, 702, 777
GluI GCNGC 2 cut(s) 357, 815
GsuI CTGGAG 1 cut(s) 346
HapII CCGG 2 cut(s) 750, 795
HgaI GACGC 1 cut(s) 87
Hin1II CATG 4 cut(s) 184, 541, 646, 821
HincII GTYRAC 2 cut(s) 535, 690
HindII GTYRAC 2 cut(s) 535, 690
HinfI GANTC 3 cut(s) 136, 169, 829
HpaII CCGG 2 cut(s) 750, 795
HphI GGTGA 1 cut(s) 417
Hpy166II GTNNAC 5 cut(s) 194, 535, 543, 690, 883
Hpy188I TCNGA 3 cut(s) 174, 720, 738
Hpy188III TCNNGA 2 cut(s) 457, 709
Hpy8I GTNNAC 5 cut(s) 194, 535, 543, 690, 883
HpyAV CCTTC 6 cut(s) 66, 512, 523, 575, 625, 751
HpyCH4III ACNGT 2 cut(s) 674, 849
HpyCH4IV ACGT 1 cut(s) 6
HpyCH4V TGCA 4 cut(s) 184, 194, 389, 883
HpyF10VI GCNNNNNNNGC 1 cut(s) 558
HpyF3I CTNAG 7 cut(s) 29, 66, 282, 352, 525, 693, 717
HpySE526I ACGT 1 cut(s) 6
Hsp92II CATG 4 cut(s) 184, 541, 646, 821
Ksp22I TGATCA 1 cut(s) 639
Kzo9I GATC 3 cut(s) 52, 241, 639
LmnI GCTCC 3 cut(s) 278, 371, 454
Lsp1109I GCAGC 1 cut(s) 826
LweI GCATC 1 cut(s) 144
MaeI CTAG 6 cut(s) 62, 189, 213, 549, 702, 777
MaeII ACGT 1 cut(s) 6
MaeIII GTNAC 7 cut(s) 112, 317, 434, 674, 763, 779, 797
MalI GATC 3 cut(s) 54, 243, 641
MboI GATC 3 cut(s) 52, 241, 639
MboII GAAGA 1 cut(s) 887
MhlI GDGCHC 3 cut(s) 196, 563, 885
MnlI CCTC 7 cut(s) 210, 255, 263, 370, 754, 835, 871
MseI TTAA 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 513
MspI CCGG 2 cut(s) 750, 795
MspR9I CCNGG 2 cut(s) 45, 898
MvaI CCWGG 2 cut(s) 45, 898
MwoI GCNNNNNNNGC 1 cut(s) 558
NdeII GATC 3 cut(s) 52, 241, 639
NlaIII CATG 4 cut(s) 184, 541, 646, 821
NmuCI GTSAC 4 cut(s) 434, 674, 779, 797
NspI RCATGY 2 cut(s) 184, 541
NspV TTCGAA 1 cut(s) 827
PaqCI CACCTGC 1 cut(s) 436
PciI ACATGT 1 cut(s) 537
PfeI GAWTC 3 cut(s) 136, 169, 829
PkrI GCNGC 2 cut(s) 358, 816
PscI ACATGT 1 cut(s) 537
Psp6I CCWGG 2 cut(s) 43, 896
PspEI GGTNACC 1 cut(s) 763
PspGI CCWGG 2 cut(s) 43, 896
PstI CTGCAG 1 cut(s) 391
RsaI GTAC 3 cut(s) 206, 487, 667
RsaNI GTAC 3 cut(s) 205, 486, 666
RseI CAYNNNNRTG 1 cut(s) 513
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 2 cut(s) 357, 815
Sau3AI GATC 3 cut(s) 52, 241, 639
ScrFI CCNGG 2 cut(s) 45, 898
SduI GDGCHC 3 cut(s) 196, 563, 885
SfaNI GCATC 1 cut(s) 144
SfcI CTRYAG 1 cut(s) 387
SfuI TTCGAA 1 cut(s) 827
SmiMI CAYNNNNRTG 1 cut(s) 513
SsiI CCGC 1 cut(s) 357
SspI AATATT 3 cut(s) 442, 466, 733
SspMI CTAG 6 cut(s) 62, 189, 213, 549, 702, 777
StyD4I CCNGG 2 cut(s) 43, 896
TaaI ACNGT 2 cut(s) 674, 849
TaiI ACGT 1 cut(s) 9
TaqI TCGA 2 cut(s) 708, 827
TatI WGTACW 1 cut(s) 204
TauI GCSGC 1 cut(s) 359
TfiI GAWTC 3 cut(s) 136, 169, 829
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseFI GTSAC 4 cut(s) 434, 674, 779, 797
TseI GCWGC 1 cut(s) 814
Tsp45I GTSAC 4 cut(s) 434, 674, 779, 797
TspDTI ATGAA 6 cut(s) 191, 245, 458, 557, 644, 770
TspGWI ACGGA 1 cut(s) 503
VneI GTGCAC 2 cut(s) 192, 881
XapI RAATTY 2 cut(s) 697, 823
XceI RCATGY 2 cut(s) 184, 541
XspI CTAG 6 cut(s) 62, 189, 213, 549, 702, 777
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.