FvH4_5g37184

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000118
Physical Location & Seq
Forward (+)
27271296 .. 27275517
4222 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37184.t1

Sequence Viewer

Length: 708 bp
ATGACGCCTGCACCGCCCGACGCGCCAGGAAGGAACGTTTCACGCACGAACCAACCAAAGGTGCTACTACTTAGTACTTGCTACAAAGCTGCTACTGCCCAACTGGGAAGTTCAACAAAGCTGCTACTGCCTGATTGTGAGTTCAACAACGCTGCTACTGCCCGACTGGGAGTTCACAACGTTGCTACTGCCCGATTCCTTTCTTCTGGTAGTGAGTTCAACAATCCTGCTACTGCAGGACTGGGAGTTCACAATGCTGCTACTGCCCGATTGAGTTCACCAACTCTGCTACTACCCAACTGGGAGTTCACAATGCTGCTACTGCCCGATTGTGAGTTCAACAATCCAGCTACTGCCCAACTGGGAAGCTTAATGGTTGATCAACGACGAAGCTTTGTTGGTGGTATTGCCTCCAACACGAAGGAGCTTGGGATGCTTATAGATCTCGCCGGCTGGCAGAGTCAAGCTCGGCTTCATCGGAATCTTACAAGGCAGCGCCAAAGTGGTTTATCGTCATCGTTGTCAAGGTTGTCATCGACGGCTTTGGCAAACGAGGAGCAACCAAATCATGACAGAGAGACAGCGGATTTGAGGTGTCGACGTGGTACAGCCAGTAGAGCACCTCCGATCTCTCGGCCAAGAAGGCCGCCGCTCAAGAAGTGCAGACGGCGATTCCAAACCAAGATGTTGGTCGCGCAAAGCCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

236

Amino Acids

25.57

Weight (kDa)

10.95

Isoelectric Point (pI)

57.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 652
AccI GTMKAC 1 cut(s) 598
AccII CGCG 2 cut(s) 23, 695
AciI CCGC 4 cut(s) 14, 584, 647, 650
AclI AACGTT 2 cut(s) 36, 180
AcoI YGGCCR 1 cut(s) 635
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 76, 607
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 4 cut(s) 114, 145, 220, 340
AjiI CACGTC 1 cut(s) 602
AjnI CCWGG 1 cut(s) 25
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AloI GAACNNNNNNTCC 2 cut(s) 231, 263
AluBI AGCT 7 cut(s) 89, 121, 350, 369, 393, 427, 467
AluI AGCT 7 cut(s) 89, 121, 350, 369, 393, 427, 467
Alw21I GWGCWC 1 cut(s) 622
Alw26I GTCTC 1 cut(s) 572
AlwNI CAGNNNCTG 1 cut(s) 353
AoxI GGCC 2 cut(s) 635, 644
ApeKI GCWGC 6 cut(s) 89, 121, 152, 257, 316, 493
ArsI GACNNNNNNTTYG 2 cut(s) 571, 603
AspLEI GCGC 3 cut(s) 25, 498, 697
AsuHPI GGTGA 1 cut(s) 270
Bbv12I GWGCWC 1 cut(s) 622
BbvI GCAGC 6 cut(s) 76, 108, 139, 244, 303, 505
BceAI ACGGC 2 cut(s) 555, 683
BciT130I CCWGG 1 cut(s) 27
BclI TGATCA 1 cut(s) 379
BcoDI GTCTC 1 cut(s) 572
BfaI CTAG 1 cut(s) 706
BfmI CTRYAG 1 cut(s) 234
BfoI RGCGCY 1 cut(s) 499
BglI GCCNNNNNGGC 1 cut(s) 643
BglII AGATCT 1 cut(s) 442
BisI GCNGC 8 cut(s) 90, 122, 153, 258, 317, 494, 647, 650
BlsI GCNGC 8 cut(s) 91, 123, 154, 259, 318, 495, 648, 651
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 27
BmgBI CACGTC 1 cut(s) 602
BmrFI CCNGG 1 cut(s) 27
BmrI ACTGGG 5 cut(s) 113, 176, 251, 310, 371
BmsI GCATC 1 cut(s) 423
BmuI ACTGGG 5 cut(s) 113, 176, 251, 310, 371
BplI GAGNNNNNCTC 2 cut(s) 451, 483
BpuEI CTTGAG 1 cut(s) 638
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse118I RCCGGY 1 cut(s) 449
Bse1I ACTGG 6 cut(s) 108, 171, 246, 305, 366, 612
BseBI CCWGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 438
BseLI CCNNNNNNNGG 1 cut(s) 58
BseNI ACTGG 6 cut(s) 108, 171, 246, 305, 366, 612
BseRI GAGGAG 1 cut(s) 569
BseXI GCAGC 6 cut(s) 76, 108, 139, 244, 303, 505
BsgI GTGCAG 1 cut(s) 682
Bsh1236I CGCG 2 cut(s) 23, 695
BshFI GGCC 2 cut(s) 637, 646
BsiHKAI GWGCWC 1 cut(s) 622
BsiSI CCGG 1 cut(s) 450
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 572
BsnI GGCC 2 cut(s) 637, 646
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 3 cut(s) 379, 442, 627
BspACI CCGC 4 cut(s) 14, 584, 647, 650
BspANI GGCC 2 cut(s) 637, 646
BspFNI CGCG 2 cut(s) 23, 695
BspHI TCATGA 1 cut(s) 568
BspMAI CTGCAG 1 cut(s) 238
BsrBI CCGCTC 1 cut(s) 652
BsrFI RCCGGY 1 cut(s) 449
BsrI ACTGG 6 cut(s) 108, 171, 246, 305, 366, 612
BssAI RCCGGY 1 cut(s) 449
BssMI GATC 3 cut(s) 379, 442, 627
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 27
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 9, 451, 455
BstDEI CTNAG 1 cut(s) 71
BstF5I GGATG 1 cut(s) 438
BstFNI CGCG 2 cut(s) 23, 695
BstH2I RGCGCY 1 cut(s) 499
BstHHI GCGC 3 cut(s) 25, 498, 697
BstKTI GATC 3 cut(s) 382, 445, 630
BstMAI GTCTC 1 cut(s) 572
BstMBI GATC 3 cut(s) 379, 442, 627
BstNI CCWGG 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 234
BstUI CGCG 2 cut(s) 23, 695
BstV1I GCAGC 6 cut(s) 76, 108, 139, 244, 303, 505
BstX2I RGATCY 1 cut(s) 442
BstXI CCANNNNNNTGG 1 cut(s) 688
BstYI RGATCY 1 cut(s) 442
BsuRI GGCC 2 cut(s) 637, 646
BtrI CACGTC 1 cut(s) 602
BtsCI GGATG 1 cut(s) 438
Cac8I GCNNGC 3 cut(s) 9, 451, 455
CaiI CAGNNNCTG 1 cut(s) 353
CciI TCATGA 1 cut(s) 568
CfoI GCGC 3 cut(s) 25, 498, 697
Cfr10I RCCGGY 1 cut(s) 449
CseI GACGC 2 cut(s) 13, 29
Csp6I GTAC 2 cut(s) 75, 606
CviAII CATG 1 cut(s) 569
CviQI GTAC 2 cut(s) 75, 606
DdeI CTNAG 1 cut(s) 71
DpnI GATC 3 cut(s) 381, 444, 629
DpnII GATC 3 cut(s) 379, 442, 627
EaeI YGGCCR 1 cut(s) 635
EcoRII CCWGG 1 cut(s) 25
FaeI CATG 1 cut(s) 572
FaiI YATR 2 cut(s) 440, 570
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FatI CATG 1 cut(s) 568
FbaI TGATCA 1 cut(s) 379
FblI GTMKAC 1 cut(s) 598
Fnu4HI GCNGC 8 cut(s) 90, 122, 153, 258, 317, 494, 647, 650
FokI GGATG 1 cut(s) 445
Fsp4HI GCNGC 8 cut(s) 90, 122, 153, 258, 317, 494, 647, 650
FspBI CTAG 1 cut(s) 706
GlaI GCGC 3 cut(s) 24, 497, 696
GluI GCNGC 8 cut(s) 90, 122, 153, 258, 317, 494, 647, 650
HaeII RGCGCY 1 cut(s) 499
HaeIII GGCC 2 cut(s) 637, 646
HapII CCGG 1 cut(s) 450
HgaI GACGC 2 cut(s) 13, 29
HhaI GCGC 3 cut(s) 25, 498, 697
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 572
Hin6I GCGC 3 cut(s) 23, 496, 695
HinP1I GCGC 3 cut(s) 23, 496, 695
HincII GTYRAC 1 cut(s) 599
HindII GTYRAC 1 cut(s) 599
HindIII AAGCTT 2 cut(s) 367, 391
HinfI GANTC 4 cut(s) 195, 460, 481, 672
HpaII CCGG 1 cut(s) 450
HphI GGTGA 1 cut(s) 270
Hpy166II GTNNAC 5 cut(s) 175, 250, 278, 309, 599
Hpy188I TCNGA 2 cut(s) 480, 627
Hpy188III TCNNGA 2 cut(s) 569, 655
Hpy8I GTNNAC 5 cut(s) 175, 250, 278, 309, 599
Hpy99I CGWCG 4 cut(s) 23, 390, 541, 603
HpyAV CCTTC 3 cut(s) 24, 415, 636
HpyCH4IV ACGT 3 cut(s) 36, 180, 601
HpyCH4V TGCA 3 cut(s) 11, 236, 663
HpyF3I CTNAG 1 cut(s) 71
HpySE526I ACGT 3 cut(s) 36, 180, 601
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 572
HspAI GCGC 3 cut(s) 23, 496, 695
KroI GCCGGC 1 cut(s) 449
KroNI GCCGGC 1 cut(s) 451
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 3 cut(s) 379, 442, 627
LmnI GCTCC 2 cut(s) 424, 556
Lsp1109I GCAGC 6 cut(s) 76, 108, 139, 244, 303, 505
LweI GCATC 1 cut(s) 423
MaeI CTAG 1 cut(s) 706
MaeII ACGT 3 cut(s) 36, 180, 601
MalI GATC 3 cut(s) 381, 444, 629
MbiI CCGCTC 1 cut(s) 652
MboI GATC 3 cut(s) 379, 442, 627
MboII GAAGA 1 cut(s) 195
MflI RGATCY 1 cut(s) 442
MhlI GDGCHC 1 cut(s) 622
MlyI GAGTC 1 cut(s) 469
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 4 cut(s) 421, 547, 585, 633
MroNI GCCGGC 1 cut(s) 449
MseI TTAA 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 1 cut(s) 450
MspR9I CCNGG 1 cut(s) 27
MvaI CCWGG 1 cut(s) 27
MvnI CGCG 2 cut(s) 23, 695
NaeI GCCGGC 1 cut(s) 451
NdeII GATC 3 cut(s) 379, 442, 627
NgoMIV GCCGGC 1 cut(s) 449
NlaIII CATG 1 cut(s) 572
NmeAIII GCCGAG 2 cut(s) 448, 613
PagI TCATGA 1 cut(s) 568
PdiI GCCGGC 1 cut(s) 451
PfeI GAWTC 3 cut(s) 195, 481, 672
PkrI GCNGC 8 cut(s) 91, 123, 154, 259, 318, 495, 648, 651
PleI GAGTC 1 cut(s) 468
PpsI GAGTC 1 cut(s) 468
Psp1406I AACGTT 2 cut(s) 36, 180
Psp6I CCWGG 1 cut(s) 25
PspGI CCWGG 1 cut(s) 25
PstI CTGCAG 1 cut(s) 238
PstNI CAGNNNCTG 1 cut(s) 353
PsuI RGATCY 1 cut(s) 442
RsaI GTAC 2 cut(s) 76, 607
RsaNI GTAC 2 cut(s) 75, 606
SalI GTCGAC 1 cut(s) 597
SaqAI TTAA 1 cut(s) 371
SatI GCNGC 8 cut(s) 90, 122, 153, 258, 317, 494, 647, 650
Sau3AI GATC 3 cut(s) 379, 442, 627
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 1 cut(s) 469
ScrFI CCNGG 1 cut(s) 27
SduI GDGCHC 1 cut(s) 622
SfaNI GCATC 1 cut(s) 423
SfcI CTRYAG 1 cut(s) 234
SfiI GGCCNNNNNGGCC 1 cut(s) 643
SmlI CTYRAG 1 cut(s) 653
SmoI CTYRAG 1 cut(s) 653
SsiI CCGC 4 cut(s) 14, 584, 647, 650
SspMI CTAG 1 cut(s) 706
StyD4I CCNGG 1 cut(s) 25
TaiI ACGT 3 cut(s) 39, 183, 604
TaqI TCGA 2 cut(s) 536, 598
TatI WGTACW 1 cut(s) 74
TauI GCSGC 2 cut(s) 649, 652
TfiI GAWTC 3 cut(s) 195, 481, 672
Tru1I TTAA 1 cut(s) 371
Tru9I TTAA 1 cut(s) 371
TseI GCWGC 6 cut(s) 89, 121, 152, 257, 316, 493
TspDTI ATGAA 1 cut(s) 464
XmiI GTMKAC 1 cut(s) 598
XspI CTAG 1 cut(s) 706
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.