FvH4_5g31082

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000118
Physical Location & Seq
Forward (+)
21992369 .. 21994404
2036 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g31082.t1

Sequence Viewer

Length: 261 bp
ATGGAGTATTTGTTGACTCTGACATCTGGATACATCTCAGTTCGGTGGACTCGCCTGGGATGGAAAGTGGTCGAAGAAGCTGCTGGGGTGGAGGCGCGTCCTTGCGCGGTTTTAGGTGATCTAGCCGGAAAACTGGAATTCGGCGGACTCGCCGGGGATGGAAAGAGGTCGGAGAAGCTGCTGGAGTCCGCTGGGGTGAAGGCGCGCCCTCGCCGGTGGCGAAAGGAGGGACATCCGCACGGTGCGGACATCCACACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

87

Amino Acids

9.41

Weight (kDa)

9.3

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 97, 107, 205
AciI CCGC 5 cut(s) 107, 144, 189, 236, 245
AcsI RAATTY 1 cut(s) 137
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 2 cut(s) 80, 178
AluI AGCT 2 cut(s) 80, 178
ApeKI GCWGC 2 cut(s) 80, 178
ApoI RAATTY 1 cut(s) 137
AscI GGCGCGCC 1 cut(s) 203
AspLEI GCGC 4 cut(s) 97, 107, 205, 207
AsuC2I CCSGG 1 cut(s) 154
AsuHPI GGTGA 2 cut(s) 128, 208
BbvI GCAGC 2 cut(s) 67, 165
BccI CCATC 2 cut(s) 54, 152
BcgI CGANNNNNNTGC 2 cut(s) 62, 96
BciT130I CCWGG 1 cut(s) 56
BciVI GTATCC 1 cut(s) 23
BcnI CCSGG 1 cut(s) 154
BfaI CTAG 1 cut(s) 122
BfuI GTATCC 1 cut(s) 23
BisI GCNGC 2 cut(s) 81, 179
BlsI GCNGC 2 cut(s) 82, 180
Bme1390I CCNGG 2 cut(s) 56, 154
BmrFI CCNGG 2 cut(s) 56, 154
BpmI CTGGAG 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 154
BsaJI CCNNGG 2 cut(s) 55, 153
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse118I RCCGGY 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 138
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 2 cut(s) 55, 153
BseGI GGATG 4 cut(s) 65, 163, 232, 249
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 138
BsePI GCGCGC 1 cut(s) 203
BseXI GCAGC 2 cut(s) 67, 165
BseYI CCCAGC 2 cut(s) 83, 191
Bsh1236I CGCG 3 cut(s) 97, 107, 205
BsiSI CCGG 3 cut(s) 126, 153, 214
BslFI GGGAC 1 cut(s) 243
BsmFI GGGAC 1 cut(s) 243
Bsp143I GATC 1 cut(s) 118
BspACI CCGC 5 cut(s) 107, 144, 189, 236, 245
BspCNI CTCAG 1 cut(s) 50
BspFNI CGCG 3 cut(s) 97, 107, 205
BsrFI RCCGGY 1 cut(s) 213
BsrI ACTGG 1 cut(s) 138
BssAI RCCGGY 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 55, 153
BssHII GCGCGC 1 cut(s) 203
BssMI GATC 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 1 cut(s) 37
BstF5I GGATG 4 cut(s) 65, 163, 232, 249
BstFNI CGCG 3 cut(s) 97, 107, 205
BstHHI GCGC 4 cut(s) 97, 107, 205, 207
BstKTI GATC 1 cut(s) 121
BstMBI GATC 1 cut(s) 118
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 2 cut(s) 54, 152
BstUI CGCG 3 cut(s) 97, 107, 205
BstV1I GCAGC 2 cut(s) 67, 165
BsuI GTATCC 1 cut(s) 23
BtsCI GGATG 4 cut(s) 65, 163, 232, 249
Cac8I GCNNGC 1 cut(s) 205
CfoI GCGC 4 cut(s) 97, 107, 205, 207
Cfr10I RCCGGY 1 cut(s) 213
CseI GACGC 1 cut(s) 86
CviJI RGCY 3 cut(s) 80, 125, 178
CviKI_1 RGCY 3 cut(s) 80, 125, 178
DdeI CTNAG 1 cut(s) 37
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
EciI GGCGGA 1 cut(s) 159
EcoRI GAATTC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 54
FaqI GGGAC 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 81, 179
FokI GGATG 4 cut(s) 72, 170, 219, 236
Fsp4HI GCNGC 2 cut(s) 81, 179
FspBI CTAG 1 cut(s) 122
GlaI GCGC 4 cut(s) 96, 106, 204, 206
GluI GCNGC 2 cut(s) 81, 179
GsaI CCCAGC 2 cut(s) 87, 195
GsuI CTGGAG 1 cut(s) 203
HapII CCGG 3 cut(s) 126, 153, 214
HgaI GACGC 1 cut(s) 86
HhaI GCGC 4 cut(s) 97, 107, 205, 207
Hin6I GCGC 4 cut(s) 95, 105, 203, 205
HinP1I GCGC 4 cut(s) 95, 105, 203, 205
HincII GTYRAC 1 cut(s) 15
HindII GTYRAC 1 cut(s) 15
HinfI GANTC 4 cut(s) 16, 49, 147, 185
HpaII CCGG 3 cut(s) 126, 153, 214
HphI GGTGA 2 cut(s) 128, 208
Hpy166II GTNNAC 2 cut(s) 15, 48
Hpy188I TCNGA 2 cut(s) 21, 172
Hpy188III TCNNGA 1 cut(s) 27
Hpy8I GTNNAC 2 cut(s) 15, 48
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 242
HpyF3I CTNAG 1 cut(s) 37
HspAI GCGC 4 cut(s) 95, 105, 203, 205
Kzo9I GATC 1 cut(s) 118
Lsp1109I GCAGC 2 cut(s) 67, 165
MaeI CTAG 1 cut(s) 122
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 1 cut(s) 86
MluCI AATT 1 cut(s) 137
MlyI GAGTC 4 cut(s) 10, 43, 141, 194
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 4 cut(s) 85, 159, 219, 220
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 3 cut(s) 126, 153, 214
MspR9I CCNGG 2 cut(s) 56, 154
MvaI CCWGG 1 cut(s) 56
MvnI CGCG 3 cut(s) 97, 107, 205
NciI CCSGG 1 cut(s) 154
NdeII GATC 1 cut(s) 118
PalAI GGCGCGCC 1 cut(s) 203
PauI GCGCGC 1 cut(s) 203
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PkrI GCNGC 2 cut(s) 82, 180
PleI GAGTC 4 cut(s) 10, 43, 141, 193
PpsI GAGTC 4 cut(s) 10, 43, 141, 193
Psp6I CCWGG 1 cut(s) 54
PspFI CCCAGC 2 cut(s) 83, 191
PspGI CCWGG 1 cut(s) 54
PteI GCGCGC 1 cut(s) 203
SatI GCNGC 2 cut(s) 81, 179
Sau3AI GATC 1 cut(s) 118
SchI GAGTC 4 cut(s) 10, 43, 141, 194
ScrFI CCNGG 2 cut(s) 56, 154
SetI ASST 5 cut(s) 82, 118, 170, 180, 260
SgrAI CRCCGGYG 1 cut(s) 213
SgsI GGCGCGCC 1 cut(s) 203
Sse9I AATT 1 cut(s) 137
SsiI CCGC 5 cut(s) 107, 144, 189, 236, 245
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 2 cut(s) 54, 152
TaaI ACNGT 1 cut(s) 242
TaqI TCGA 1 cut(s) 72
TasI AATT 1 cut(s) 137
TseI GCWGC 2 cut(s) 80, 178
XapI RAATTY 1 cut(s) 137
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.