FvH4_3g22320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Forward (+)
15341989 .. 15342802
814 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22320.t1

Sequence Viewer

Length: 606 bp
ATGGAGTTCAAGGGTGCTTCTTCGGCGGTGGTACTGATGATTCTATTAATCGTTGGATATGCAACGGCCGATGATTGTTATGCAAACTGTACTTCATATTGCCCTGTATCAAGAACAAGAGAATGCTTCAAGCATTGTGGCAACGAGTGCTCCGGTGGCAGCATCGGGGGTCTAGCTCGGAAAACTAAAGATCACCATCACCATTGCAAACATGGTTGCTCACACCACTGTGTCAAATATCACCATGATAAAAGAAATTGGAAAGATGCATGCATCACTGCACAACAAACTGCAATATCAGAGCTCCCGATCCTAGTGTCCGCACCGTTTTACGGTGCGGATTTTCGACCGTTCGCCACCATACGGCGCCAACGAAGGCGCGCCTCCACCCTAGCCGACTTCAGCAGCTTCCCCGACCACTTTCCATCCCCGGTGAGTCCGCCGAATTCCAGTTTTCCGGCCAGATTGACTTTGTTTGAAGTTTTGGGTGATCTGGCCGGAAAACTGAAATTCGGCGGACTCGCCGGGGATGGAAAGTGGTCGAGGAAGCTGTTGGAGTCGGCTGGGGTGGAGAGGCGCCCTCGCGCGGCGCCGTACGATGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.1

Weight (kDa)

9.14

Isoelectric Point (pI)

57.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 366, 576, 589
AccII CGCG 3 cut(s) 381, 585, 587
AciI CCGC 6 cut(s) 26, 321, 338, 440, 516, 587
AclWI GGATC 1 cut(s) 304
AcoI YGGCCR 3 cut(s) 66, 459, 495
AcsI RAATTY 2 cut(s) 445, 509
AcuI CTGAAG 1 cut(s) 385
AcyI GRCGYC 3 cut(s) 367, 577, 590
AfaI GTAC 3 cut(s) 33, 91, 596
AfiI CCNNNNNNNGG 4 cut(s) 332, 363, 586, 599
AgsI TTSAA 3 cut(s) 10, 130, 479
AleI CACNNNNGTG 1 cut(s) 228
AluBI AGCT 4 cut(s) 176, 304, 408, 550
AluI AGCT 4 cut(s) 176, 304, 408, 550
Alw21I GWGCWC 2 cut(s) 152, 306
AlwI GGATC 1 cut(s) 304
AoxI GGCC 3 cut(s) 66, 459, 495
ApeKI GCWGC 2 cut(s) 159, 405
ApoI RAATTY 2 cut(s) 445, 509
AscI GGCGCGCC 1 cut(s) 379
AseI ATTAAT 1 cut(s) 47
AspLEI GCGC 6 cut(s) 369, 381, 383, 579, 587, 592
AsuC2I CCSGG 2 cut(s) 431, 526
AsuHPI GGTGA 5 cut(s) 185, 191, 233, 445, 500
BanI GGYRCC 3 cut(s) 366, 576, 589
BanII GRGCYC 1 cut(s) 306
Bbv12I GWGCWC 2 cut(s) 152, 306
BbvI GCAGC 2 cut(s) 171, 417
BccI CCATC 4 cut(s) 204, 433, 524, 593
BceAI ACGGC 3 cut(s) 81, 380, 577
BcnI CCSGG 2 cut(s) 431, 526
BfaI CTAG 3 cut(s) 173, 314, 392
BfoI RGCGCY 3 cut(s) 370, 580, 593
BisI GCNGC 3 cut(s) 160, 406, 588
BlsI GCNGC 3 cut(s) 161, 407, 589
Bme1390I CCNGG 2 cut(s) 431, 526
BmiI GGNNCC 3 cut(s) 368, 578, 591
BmrFI CCNGG 2 cut(s) 431, 526
BmsI GCATC 3 cut(s) 171, 256, 282
BplI GAGNNNNNCTC 2 cut(s) 565, 597
BpuMI CCSGG 2 cut(s) 431, 526
BsaBI GATNNNNATC 1 cut(s) 195
BsaHI GRCGYC 3 cut(s) 367, 577, 590
BsaJI CCNNGG 2 cut(s) 429, 525
BsaWI WCCGGW 1 cut(s) 152
BsaXI ACNNNNNCTCC 2 cut(s) 134, 164
Bsc4I CCNNNNNNNGG 4 cut(s) 332, 363, 586, 599
Bse1I ACTGG 1 cut(s) 450
Bse3DI GCAATG 1 cut(s) 202
Bse8I GATNNNNATC 1 cut(s) 195
BseDI CCNNGG 2 cut(s) 429, 525
BseGI GGATG 2 cut(s) 425, 535
BseJI GATNNNNATC 1 cut(s) 195
BseLI CCNNNNNNNGG 4 cut(s) 332, 363, 586, 599
BseMI GCAATG 1 cut(s) 202
BseNI ACTGG 1 cut(s) 450
BsePI GCGCGC 1 cut(s) 379
BseX3I CGGCCG 1 cut(s) 66
BseXI GCAGC 2 cut(s) 171, 417
BseYI CCCAGC 1 cut(s) 563
BsgI GTGCAG 1 cut(s) 264
Bsh1236I CGCG 3 cut(s) 381, 585, 587
Bsh1285I CGRYCG 2 cut(s) 69, 350
BshFI GGCC 3 cut(s) 68, 461, 497
BshNI GGYRCC 3 cut(s) 366, 576, 589
BsiEI CGRYCG 2 cut(s) 69, 350
BsiHKAI GWGCWC 2 cut(s) 152, 306
BsiSI CCGG 5 cut(s) 153, 431, 458, 498, 525
BsiWI CGTACG 1 cut(s) 594
BslI CCNNNNNNNGG 4 cut(s) 332, 363, 586, 599
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 3 cut(s) 68, 461, 497
Bsp1286I GDGCHC 2 cut(s) 152, 306
Bsp143I GATC 3 cut(s) 190, 309, 490
BspACI CCGC 6 cut(s) 26, 321, 338, 440, 516, 587
BspANI GGCC 3 cut(s) 68, 461, 497
BspFNI CGCG 3 cut(s) 381, 585, 587
BspLI GGNNCC 3 cut(s) 368, 578, 591
BspPI GGATC 1 cut(s) 304
BspT107I GGYRCC 3 cut(s) 366, 576, 589
BsrDI GCAATG 1 cut(s) 202
BsrI ACTGG 1 cut(s) 450
BssECI CCNNGG 2 cut(s) 429, 525
BssHII GCGCGC 1 cut(s) 379
BssMI GATC 3 cut(s) 190, 309, 490
BssNI GRCGYC 3 cut(s) 367, 577, 590
Bst4CI ACNGT 5 cut(s) 89, 230, 327, 335, 351
BstACI GRCGYC 3 cut(s) 367, 577, 590
BstAPI GCANNNNNTGC 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 271, 381
BstF5I GGATG 2 cut(s) 425, 535
BstFNI CGCG 3 cut(s) 381, 585, 587
BstH2I RGCGCY 3 cut(s) 370, 580, 593
BstHHI GCGC 6 cut(s) 369, 381, 383, 579, 587, 592
BstKTI GATC 3 cut(s) 193, 312, 493
BstMBI GATC 3 cut(s) 190, 309, 490
BstMCI CGRYCG 2 cut(s) 69, 350
BstMWI GCNNNNNNNGC 3 cut(s) 23, 147, 156
BstNSI RCATGY 1 cut(s) 273
BstSCI CCNGG 2 cut(s) 429, 524
BstUI CGCG 3 cut(s) 381, 585, 587
BstV1I GCAGC 2 cut(s) 171, 417
BstZI CGGCCG 1 cut(s) 66
BsuRI GGCC 3 cut(s) 68, 461, 497
BtsCI GGATG 2 cut(s) 425, 535
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 226, 276
Cac8I GCNNGC 2 cut(s) 271, 381
CfoI GCGC 6 cut(s) 369, 381, 383, 579, 587, 592
Csp6I GTAC 3 cut(s) 32, 90, 595
CspCI CAANNNNNGTGG 2 cut(s) 118, 153
CviAII CATG 3 cut(s) 212, 245, 270
CviQI GTAC 3 cut(s) 32, 90, 595
DinI GGCGCC 3 cut(s) 368, 578, 591
DpnI GATC 3 cut(s) 192, 311, 492
DpnII GATC 3 cut(s) 190, 309, 490
EaeI YGGCCR 3 cut(s) 66, 459, 495
EagI CGGCCG 1 cut(s) 66
EciI GGCGGA 2 cut(s) 429, 531
Ecl136II GAGCTC 1 cut(s) 304
EclXI CGGCCG 1 cut(s) 66
Eco24I GRGCYC 1 cut(s) 306
Eco52I CGGCCG 1 cut(s) 66
Eco53kI GAGCTC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 385
EcoICRI GAGCTC 1 cut(s) 304
EcoRI GAATTC 1 cut(s) 445
EcoT22I ATGCAT 2 cut(s) 271, 275
EcoT38I GRGCYC 1 cut(s) 306
EgeI GGCGCC 3 cut(s) 368, 578, 591
EheI GGCGCC 3 cut(s) 368, 578, 591
FaeI CATG 3 cut(s) 215, 248, 273
FaiI YATR 7 cut(s) 60, 81, 97, 213, 246, 271, 362
FatI CATG 3 cut(s) 211, 244, 269
Fnu4HI GCNGC 3 cut(s) 160, 406, 588
FokI GGATG 2 cut(s) 412, 542
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 3 cut(s) 160, 406, 588
FspBI CTAG 3 cut(s) 173, 314, 392
GlaI GCGC 6 cut(s) 368, 380, 382, 578, 586, 591
GluI GCNGC 3 cut(s) 160, 406, 588
GsaI CCCAGC 1 cut(s) 567
HaeII RGCGCY 3 cut(s) 370, 580, 593
HaeIII GGCC 3 cut(s) 68, 461, 497
HapII CCGG 5 cut(s) 153, 431, 458, 498, 525
HhaI GCGC 6 cut(s) 369, 381, 383, 579, 587, 592
Hin1I GRCGYC 3 cut(s) 367, 577, 590
Hin1II CATG 3 cut(s) 215, 248, 273
Hin6I GCGC 6 cut(s) 367, 379, 381, 577, 585, 590
HinP1I GCGC 6 cut(s) 367, 379, 381, 577, 585, 590
HinfI GANTC 4 cut(s) 40, 436, 519, 557
HpaII CCGG 5 cut(s) 153, 431, 458, 498, 525
HphI GGTGA 5 cut(s) 185, 191, 233, 445, 500
Hpy188I TCNGA 2 cut(s) 180, 301
Hpy188III TCNNGA 2 cut(s) 111, 307
HpyAV CCTTC 1 cut(s) 369
HpyCH4III ACNGT 5 cut(s) 89, 230, 327, 335, 351
HpyCH4V TGCA 7 cut(s) 62, 83, 207, 269, 273, 281, 293
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 147, 156
Hsp92I GRCGYC 3 cut(s) 367, 577, 590
Hsp92II CATG 3 cut(s) 215, 248, 273
HspAI GCGC 6 cut(s) 367, 379, 381, 577, 585, 590
KasI GGCGCC 3 cut(s) 366, 576, 589
Kzo9I GATC 3 cut(s) 190, 309, 490
LmnI GCTCC 2 cut(s) 155, 309
Lsp1109I GCAGC 2 cut(s) 171, 417
LweI GCATC 3 cut(s) 171, 256, 282
MaeI CTAG 3 cut(s) 173, 314, 392
MalI GATC 3 cut(s) 192, 311, 492
MboI GATC 3 cut(s) 190, 309, 490
MboII GAAGA 1 cut(s) 12
MhlI GDGCHC 2 cut(s) 152, 306
MluCI AATT 3 cut(s) 256, 445, 509
Mly113I GGCGCC 3 cut(s) 367, 577, 590
MlyI GAGTC 3 cut(s) 445, 513, 566
MmeI TCCRAC 2 cut(s) 34, 534
MnlI CCTC 4 cut(s) 394, 537, 567, 591
Mph1103I ATGCAT 2 cut(s) 271, 275
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 1 cut(s) 228
MspI CCGG 5 cut(s) 153, 431, 458, 498, 525
MspR9I CCNGG 2 cut(s) 431, 526
MteI GCGCNGCGC 1 cut(s) 588
Mva1269I GAATGC 1 cut(s) 128
MvnI CGCG 3 cut(s) 381, 585, 587
MwoI GCNNNNNNNGC 3 cut(s) 23, 147, 156
NarI GGCGCC 3 cut(s) 367, 577, 590
NciI CCSGG 2 cut(s) 431, 526
NdeII GATC 3 cut(s) 190, 309, 490
NlaIII CATG 3 cut(s) 215, 248, 273
NlaIV GGNNCC 3 cut(s) 368, 578, 591
NsiI ATGCAT 2 cut(s) 271, 275
NspI RCATGY 1 cut(s) 273
OliI CACNNNNGTG 1 cut(s) 228
PaeI GCATGC 1 cut(s) 273
PalAI GGCGCGCC 1 cut(s) 379
PauI GCGCGC 1 cut(s) 379
PcsI WCGNNNNNNNCGW 1 cut(s) 370
PctI GAATGC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 40
Pfl23II CGTACG 1 cut(s) 594
PkrI GCNGC 3 cut(s) 161, 407, 589
PleI GAGTC 3 cut(s) 444, 513, 565
PluTI GGCGCC 3 cut(s) 370, 580, 593
PpsI GAGTC 3 cut(s) 444, 513, 565
PshBI ATTAAT 1 cut(s) 47
Psp124BI GAGCTC 1 cut(s) 306
PspFI CCCAGC 1 cut(s) 563
PspLI CGTACG 1 cut(s) 594
PspN4I GGNNCC 3 cut(s) 368, 578, 591
PteI GCGCGC 1 cut(s) 379
RsaI GTAC 3 cut(s) 33, 91, 596
RsaNI GTAC 3 cut(s) 32, 90, 595
RseI CAYNNNNRTG 1 cut(s) 228
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 3 cut(s) 160, 406, 588
Sau3AI GATC 3 cut(s) 190, 309, 490
SchI GAGTC 3 cut(s) 445, 513, 566
ScrFI CCNGG 2 cut(s) 431, 526
SduI GDGCHC 2 cut(s) 152, 306
SetI ASST 4 cut(s) 178, 306, 410, 552
SfaNI GCATC 3 cut(s) 171, 256, 282
SfoI GGCGCC 3 cut(s) 368, 578, 591
SgsI GGCGCGCC 1 cut(s) 379
SmiMI CAYNNNNRTG 1 cut(s) 228
SphI GCATGC 1 cut(s) 273
Sse9I AATT 3 cut(s) 256, 445, 509
SsiI CCGC 6 cut(s) 26, 321, 338, 440, 516, 587
SspDI GGCGCC 3 cut(s) 366, 576, 589
SspMI CTAG 3 cut(s) 173, 314, 392
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 429, 524
TaaI ACNGT 5 cut(s) 89, 230, 327, 335, 351
TaqI TCGA 2 cut(s) 346, 542
TasI AATT 3 cut(s) 256, 445, 509
TatI WGTACW 1 cut(s) 89
TauI GCSGC 1 cut(s) 590
TfiI GAWTC 1 cut(s) 40
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 2 cut(s) 233, 283
TseI GCWGC 2 cut(s) 159, 405
TspDTI ATGAA 1 cut(s) 84
TspRI CASTG 2 cut(s) 233, 283
VspI ATTAAT 1 cut(s) 47
XapI RAATTY 2 cut(s) 445, 509
XceI RCATGY 1 cut(s) 273
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XspI CTAG 3 cut(s) 173, 314, 392
Zsp2I ATGCAT 2 cut(s) 271, 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.