FvH4_2g12101

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000118
Physical Location & Seq
Reverse (-)
10603579 .. 10609059
5481 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g12101.t1

Sequence Viewer

Length: 1746 bp
ATGAATGATGACATTGAAGACTATGAAGATGACTTGAAACAAATTTCTGCTGATAAAGTAGAGGACAAATGCATGAAAGATGATGGAAGTGTTCTGGCTGCTGCAGTATCTTCCAATAAGAGAACTGATATAACTAATGAGAAGGAGAATAGTAATTCCATAGCTAGTATTCCAAAGCCACCCATGAATTATTCCAAGAAGGGAGATCTTCCAAGTGATTCCAAAAACCAATCAGGGCCAAGGGGAAAAGGTCACTTGAACTCTTCACATATTAAACCGTATACTATGAAAAGAGAAGAGAACGTGAAAAATGCAAGTGGCACATCCATGTTAGCTCAGGAGAATCAGGCAATTAAGTGGGAGAAGTTGGATGTTGGAAGATCTAGACAGATTCTTAATCCCAGACCCCAAACATTGCTCCACAAGTCAAAACTGGGTCATACCAGTGCCACACATTTTTCAACTGCTATTAAAACTCAAAAGGAGGACAGGACAGGACGGTTTATTTATGTTCAGGAACCTGCAGCACCATTTGTTTCAATGGCAGAAATGATGAACAGGTTCCAATCAAGTACCAGAGACTTGTCGCTGCCGCATGCTAATGGTTCTCTTTCACACATGAAGCCTAAACTCACCTTAACAAGACCAAAGGAGCCAGAATTTGAGACATCACAGCGTGTGCGCTCAGTTAGAGTGAAGAGTACTGCTGAGCTGGAAGAAGAGATGATGGCCAAAATTCCCAAGTTTAAGGCTCGTCCAGTAAACAAAAAGATTCTTGAAGCACCATCATTACCTGCAATGTCAAGAAGTACCCCACAGCCACCTGCATTTCAGCCGCTCAAATTGGTCATCTTGAGACCAGGATACAGGATCAAGCAGTTGCTTATAACCAACGTTTGGCTGCAATCGAAGCTTCTATCCAGAACGAAGAAGAGTGTTGGTGGAGGATCAAGGATGCAGTCTAGGAGGAATGTTCGCAGGCAGGCTGTTCGAAACAACAATGGGCAAGATGGACATGATCCTGAGGAAAAAGCATTGAAGTCTGTCATAGTTGAAGCTCCAAACTTTGATGGCCAGCTGAATGCGAAGGTGTGTCTGGATTGGATATCAGACATGGACCACTATTTTGACTGGTACGAGTTGTCTGAAACTCGAAGGGTGCGGTTTGCAAAGATGAAGTTGGTGGGCAAAGCTAGAGAATGGTGGAGTGGTGTGGAAAGGCGAGCTGCAAGAGCCGGTGATGAACCTATCATTCATTGGGAGGAGATGAAAGAAAGGCTGAAGGAGAAGTACGTTCCTTTGGCTTACAAAGAGCGCTTGCTGAATCAGTGGCAATCTCTTCGTCAAGGGAACATGACAGCTGCTGAGTATATTGATAAGTTTGAAGAATTTATGAGGGAGCTGATTCCTCATGAAGTATATTCATTGGAGCGAGCATACCAGATAGTGCTGGAATTGGAGCGCTACTTGCAGACTCCTACAACTGTGCATAGCCGATTTGACCAGAAAAATCCTGAATTTCGTCCCAGCTCATCGGGAACAGCACCATCTCCATTTGCCAATAGCTCCAGTACTGCCAATTCATTTGTGAAAGCTGATACAGGAAAGGGAGTGCAATCTGGTGTTCGAGGAGGGGGATCTGTAAAGTGCTACAAGTGTCTAGGCCATGGTCACTATGCTGGCCAATGCCCAACCAAAGAGAAACATCGTAGTCTGTTTGCAGCAAGCACAGGAAAAGAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag zf-CCHC

Protein Analysis

582

Amino Acids

65.82

Weight (kDa)

9.61

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2_importin PF12214 212 - 284 5.9e-24 Cell cycle regulated microtubule associated protein
Ty3_capsid PF19259 350 - 479 5.7e-07 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 389 - 468 2.7e-16 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 887
AarI CACCTGC 1 cut(s) 832
Acc36I ACCTGC 3 cut(s) 529, 802, 832
AccB7I CCANNNNNTGG 1 cut(s) 897
AccBSI CCGCTC 1 cut(s) 838
AccI GTMKAC 1 cut(s) 281
AciI CCGC 3 cut(s) 593, 836, 1162
AclI AACGTT 1 cut(s) 894
AclWI GGATC 4 cut(s) 878, 955, 1013, 1645
AcoI YGGCCR 3 cut(s) 729, 1072, 1681
AcsI RAATTY 5 cut(s) 42, 659, 735, 1388, 1517
AcuI CTGAAG 1 cut(s) 1301
AdeI CACNNNGTG 1 cut(s) 677
AfaI GTAC 6 cut(s) 574, 703, 811, 1136, 1292, 1573
AfeI AGCGCT 2 cut(s) 1316, 1463
AfiI CCNNNNNNNGG 1 cut(s) 897
AgsI TTSAA 9 cut(s) 17, 37, 259, 462, 540, 779, 1039, 1055, 1385
AjnI CCWGG 1 cut(s) 859
Alw26I GTCTC 3 cut(s) 573, 659, 850
AlwI GGATC 4 cut(s) 878, 955, 1013, 1645
AlwNI CAGNNNCTG 1 cut(s) 1364
Aor51HI AGCGCT 2 cut(s) 1316, 1463
AoxI GGCC 5 cut(s) 236, 729, 1072, 1663, 1681
ApeKI GCWGC 8 cut(s) 98, 101, 524, 589, 901, 1226, 1361, 1721
ApoI RAATTY 5 cut(s) 42, 659, 735, 1388, 1517
ArsI GACNNNNNNTTYG 2 cut(s) 1109, 1141
Asp700I GAANNNNTTC 1 cut(s) 560
AspLEI GCGC 3 cut(s) 684, 1317, 1464
AspS9I GGNCC 2 cut(s) 236, 1117
AsuHPI GGTGA 2 cut(s) 625, 1250
AsuII TTCGAA 1 cut(s) 991
AvaII GGWCC 1 cut(s) 1117
AxyI CCTNAGG 1 cut(s) 1023
BalI TGGCCA 3 cut(s) 731, 1074, 1683
BarI GAAGNNNNNNTAC 2 cut(s) 1274, 1306
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 8 cut(s) 85, 88, 536, 576, 888, 1213, 1348, 1733
BccI CCATC 6 cut(s) 77, 721, 793, 1004, 1064, 1555
BcgI CGANNNNNNTGC 4 cut(s) 971, 1005, 1322, 1356
BciT130I CCWGG 1 cut(s) 861
BciVI GTATCC 1 cut(s) 857
BcoDI GTCTC 3 cut(s) 573, 659, 850
BfaI CTAG 5 cut(s) 165, 384, 963, 1194, 1661
BfmI CTRYAG 2 cut(s) 102, 522
BfoI RGCGCY 2 cut(s) 1318, 1465
BfuAI ACCTGC 3 cut(s) 529, 802, 832
BfuI GTATCC 1 cut(s) 857
BglII AGATCT 2 cut(s) 205, 380
BlpI GCTNAGC 1 cut(s) 708
BmcAI AGTACT 2 cut(s) 703, 1573
Bme1390I CCNGG 1 cut(s) 861
Bme18I GGWCC 1 cut(s) 1117
BmgT120I GGNCC 2 cut(s) 236, 1117
BmiI GGNNCC 3 cut(s) 519, 563, 654
BmrFI CCNGG 1 cut(s) 861
BmrI ACTGGG 1 cut(s) 443
BmsI GCATC 1 cut(s) 945
BmuI ACTGGG 1 cut(s) 443
BpiI GAAGAC 1 cut(s) 24
BpmI CTGGAG 1 cut(s) 1552
Bpu10I CCTNAGC 1 cut(s) 336
Bpu1102I GCTNAGC 1 cut(s) 708
Bpu14I TTCGAA 1 cut(s) 991
BpuEI CTTGAG 1 cut(s) 874
BsaI GGTCTC 1 cut(s) 850
BsaJI CCNNGG 2 cut(s) 239, 1666
Bsc4I CCNNNNNNNGG 1 cut(s) 897
Bse118I RCCGGY 1 cut(s) 1235
Bse1I ACTGG 5 cut(s) 438, 444, 758, 1136, 1569
Bse21I CCTNAGG 1 cut(s) 1023
Bse3DI GCAATG 2 cut(s) 413, 804
BseBI CCWGG 1 cut(s) 861
BseDI CCNNGG 2 cut(s) 239, 1666
BseGI GGATG 3 cut(s) 323, 376, 960
BseLI CCNNNNNNNGG 1 cut(s) 897
BseMI GCAATG 2 cut(s) 413, 804
BseMII CTCAG 5 cut(s) 350, 699, 699, 1014, 1356
BseNI ACTGG 5 cut(s) 438, 444, 758, 1136, 1569
BseRI GAGGAG 2 cut(s) 1277, 1644
BseXI GCAGC 8 cut(s) 85, 88, 536, 576, 888, 1213, 1348, 1733
BseYI CCCAGC 1 cut(s) 1526
BshFI GGCC 5 cut(s) 238, 731, 1074, 1665, 1683
BsiSI CCGG 1 cut(s) 1236
BslFI GGGAC 1 cut(s) 1509
BslI CCNNNNNNNGG 1 cut(s) 897
BsmAI GTCTC 3 cut(s) 573, 659, 850
BsmFI GGGAC 1 cut(s) 1509
BsmI GAATGC 1 cut(s) 1087
BsnI GGCC 5 cut(s) 238, 731, 1074, 1665, 1683
Bso31I GGTCTC 1 cut(s) 850
Bsp119I TTCGAA 1 cut(s) 991
Bsp143I GATC 6 cut(s) 205, 380, 870, 947, 1018, 1637
Bsp1720I GCTNAGC 1 cut(s) 708
Bsp19I CCATGG 1 cut(s) 1666
BspACI CCGC 3 cut(s) 593, 836, 1162
BspANI GGCC 5 cut(s) 238, 731, 1074, 1665, 1683
BspCNI CTCAG 5 cut(s) 349, 698, 700, 1015, 1357
BspHI TCATGA 1 cut(s) 1411
BspLI GGNNCC 3 cut(s) 519, 563, 654
BspMAI CTGCAG 2 cut(s) 106, 526
BspMI ACCTGC 3 cut(s) 529, 802, 832
BspPI GGATC 4 cut(s) 878, 955, 1013, 1645
BspT104I TTCGAA 1 cut(s) 991
BspTNI GGTCTC 1 cut(s) 850
BsrBI CCGCTC 1 cut(s) 838
BsrDI GCAATG 2 cut(s) 413, 804
BsrFI RCCGGY 1 cut(s) 1235
BsrI ACTGG 5 cut(s) 438, 444, 758, 1136, 1569
BssAI RCCGGY 1 cut(s) 1235
BssECI CCNNGG 2 cut(s) 239, 1666
BssMI GATC 6 cut(s) 205, 380, 870, 947, 1018, 1637
BssNAI GTATAC 1 cut(s) 282
BssT1I CCWWGG 2 cut(s) 239, 1666
Bst1107I GTATAC 1 cut(s) 282
Bst2UI CCWGG 1 cut(s) 861
Bst4CI ACNGT 3 cut(s) 279, 501, 1486
Bst6I CTCTTC 6 cut(s) 268, 291, 692, 714, 926, 1344
BstBI TTCGAA 1 cut(s) 991
BstC8I GCNNGC 9 cut(s) 597, 980, 984, 1076, 1224, 1319, 1434, 1681, 1726
BstDEI CTNAG 5 cut(s) 336, 685, 708, 1023, 1365
BstDSI CCRYGG 1 cut(s) 1666
BstF5I GGATG 3 cut(s) 323, 376, 960
BstH2I RGCGCY 2 cut(s) 1318, 1465
BstHHI GCGC 3 cut(s) 684, 1317, 1464
BstKTI GATC 6 cut(s) 208, 383, 873, 950, 1021, 1640
BstMAI GTCTC 3 cut(s) 573, 659, 850
BstMBI GATC 6 cut(s) 205, 380, 870, 947, 1018, 1637
BstMWI GCNNNNNNNGC 3 cut(s) 910, 1232, 1468
BstNI CCWGG 1 cut(s) 861
BstNSI RCATGY 1 cut(s) 599
BstSCI CCNGG 1 cut(s) 859
BstSFI CTRYAG 2 cut(s) 102, 522
BstV1I GCAGC 8 cut(s) 85, 88, 536, 576, 888, 1213, 1348, 1733
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 3 cut(s) 205, 380, 1637
BstYI RGATCY 3 cut(s) 205, 380, 1637
BstZ17I GTATAC 1 cut(s) 282
Bsu36I CCTNAGG 1 cut(s) 1023
BsuI GTATCC 1 cut(s) 857
BsuRI GGCC 5 cut(s) 238, 731, 1074, 1665, 1683
BtgI CCRYGG 1 cut(s) 1666
BtsCI GGATG 3 cut(s) 323, 376, 960
BtsIMutI CAGTG 2 cut(s) 451, 1334
BveI ACCTGC 3 cut(s) 529, 802, 832
Cac8I GCNNGC 9 cut(s) 597, 980, 984, 1076, 1224, 1319, 1434, 1681, 1726
CaiI CAGNNNCTG 1 cut(s) 1364
CciI TCATGA 1 cut(s) 1411
CfoI GCGC 3 cut(s) 684, 1317, 1464
Cfr10I RCCGGY 1 cut(s) 1235
Cfr13I GGNCC 2 cut(s) 236, 1117
Csp6I GTAC 6 cut(s) 573, 702, 810, 1135, 1291, 1572
CviQI GTAC 6 cut(s) 573, 702, 810, 1135, 1291, 1572
DdeI CTNAG 5 cut(s) 336, 685, 708, 1023, 1365
DpnI GATC 6 cut(s) 207, 382, 872, 949, 1020, 1639
DpnII GATC 6 cut(s) 205, 380, 870, 947, 1018, 1637
DraIII CACNNNGTG 1 cut(s) 677
EaeI YGGCCR 3 cut(s) 729, 1072, 1681
Eam1104I CTCTTC 6 cut(s) 268, 291, 692, 714, 926, 1344
EarI CTCTTC 6 cut(s) 268, 291, 692, 714, 926, 1344
Eco130I CCWWGG 2 cut(s) 239, 1666
Eco31I GGTCTC 1 cut(s) 850
Eco32I GATATC 1 cut(s) 1107
Eco47I GGWCC 1 cut(s) 1117
Eco47III AGCGCT 2 cut(s) 1316, 1463
Eco57I CTGAAG 1 cut(s) 1301
Eco81I CCTNAGG 1 cut(s) 1023
EcoRII CCWGG 1 cut(s) 859
EcoRV GATATC 1 cut(s) 1107
EcoT14I CCWWGG 2 cut(s) 239, 1666
EcoT22I ATGCAT 1 cut(s) 74
ErhI CCWWGG 2 cut(s) 239, 1666
FaqI GGGAC 1 cut(s) 1509
FblI GTMKAC 1 cut(s) 281
FokI GGATG 3 cut(s) 310, 383, 967
FspBI CTAG 5 cut(s) 165, 384, 963, 1194, 1661
GlaI GCGC 3 cut(s) 683, 1316, 1463
GsaI CCCAGC 1 cut(s) 1530
GsuI CTGGAG 1 cut(s) 1552
HaeII RGCGCY 2 cut(s) 1318, 1465
HaeIII GGCC 5 cut(s) 238, 731, 1074, 1665, 1683
HapII CCGG 1 cut(s) 1236
HhaI GCGC 3 cut(s) 684, 1317, 1464
Hin6I GCGC 3 cut(s) 682, 1315, 1462
HinP1I GCGC 3 cut(s) 682, 1315, 1462
HindIII AAGCTT 1 cut(s) 911
HinfI GANTC 7 cut(s) 218, 343, 391, 772, 1324, 1405, 1474
HpaII CCGG 1 cut(s) 1236
HphI GGTGA 2 cut(s) 625, 1250
Hpy166II GTNNAC 2 cut(s) 282, 763
Hpy188I TCNGA 2 cut(s) 1111, 1147
Hpy8I GTNNAC 2 cut(s) 282, 763
HpyAV CCTTC 5 cut(s) 136, 193, 1081, 1149, 1276
HpyCH4III ACNGT 3 cut(s) 279, 501, 1486
HpyCH4IV ACGT 3 cut(s) 303, 894, 1293
HpyF10VI GCNNNNNNNGC 3 cut(s) 910, 1232, 1468
HpyF3I CTNAG 5 cut(s) 336, 685, 708, 1023, 1365
HpySE526I ACGT 3 cut(s) 303, 894, 1293
HspAI GCGC 3 cut(s) 682, 1315, 1462
Kzo9I GATC 6 cut(s) 205, 380, 870, 947, 1018, 1637
LmnI GCTCC 7 cut(s) 423, 652, 1063, 1399, 1429, 1459, 1571
Lsp1109I GCAGC 8 cut(s) 85, 88, 536, 576, 888, 1213, 1348, 1733
LweI GCATC 1 cut(s) 945
MaeI CTAG 5 cut(s) 165, 384, 963, 1194, 1661
MaeII ACGT 3 cut(s) 303, 894, 1293
MaeIII GTNAC 2 cut(s) 251, 1670
MalI GATC 6 cut(s) 207, 382, 872, 949, 1020, 1639
MbiI CCGCTC 1 cut(s) 838
MboI GATC 6 cut(s) 205, 380, 870, 947, 1018, 1637
MflI RGATCY 3 cut(s) 205, 380, 1637
MlsI TGGCCA 3 cut(s) 731, 1074, 1683
MluNI TGGCCA 3 cut(s) 731, 1074, 1683
MlyI GAGTC 1 cut(s) 1468
MmeI TCCRAC 2 cut(s) 348, 355
Mox20I TGGCCA 3 cut(s) 731, 1074, 1683
Mph1103I ATGCAT 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 560
MscI TGGCCA 3 cut(s) 731, 1074, 1683
MseI TTAA 6 cut(s) 273, 354, 396, 471, 638, 747
MslI CAYNNNNRTG 3 cut(s) 326, 444, 600
Msp20I TGGCCA 3 cut(s) 731, 1074, 1683
MspA1I CMGCKG 2 cut(s) 1078, 1361
MspI CCGG 1 cut(s) 1236
MspR9I CCNGG 1 cut(s) 861
Mva1269I GAATGC 1 cut(s) 1087
MvaI CCWGG 1 cut(s) 861
MwoI GCNNNNNNNGC 3 cut(s) 910, 1232, 1468
NcoI CCATGG 1 cut(s) 1666
NdeII GATC 6 cut(s) 205, 380, 870, 947, 1018, 1637
NlaIV GGNNCC 3 cut(s) 519, 563, 654
NmuCI GTSAC 2 cut(s) 251, 1670
NsiI ATGCAT 1 cut(s) 74
NspI RCATGY 1 cut(s) 599
NspV TTCGAA 1 cut(s) 991
PaeI GCATGC 1 cut(s) 599
PagI TCATGA 1 cut(s) 1411
PaqCI CACCTGC 1 cut(s) 832
PctI GAATGC 1 cut(s) 1087
PdmI GAANNNNTTC 1 cut(s) 560
PfeI GAWTC 6 cut(s) 218, 343, 391, 772, 1324, 1405
PflMI CCANNNNNTGG 1 cut(s) 897
PleI GAGTC 1 cut(s) 1468
PpsI GAGTC 1 cut(s) 1468
PsiI TTATAA 1 cut(s) 887
Psp1406I AACGTT 1 cut(s) 894
Psp6I CCWGG 1 cut(s) 859
PspFI CCCAGC 1 cut(s) 1526
PspGI CCWGG 1 cut(s) 859
PspN4I GGNNCC 3 cut(s) 519, 563, 654
PspPI GGNCC 2 cut(s) 236, 1117
PstI CTGCAG 2 cut(s) 106, 526
PstNI CAGNNNCTG 1 cut(s) 1364
PsuI RGATCY 3 cut(s) 205, 380, 1637
PvuII CAGCTG 2 cut(s) 1078, 1361
RsaI GTAC 6 cut(s) 574, 703, 811, 1136, 1292, 1573
RsaNI GTAC 6 cut(s) 573, 702, 810, 1135, 1291, 1572
RseI CAYNNNNRTG 3 cut(s) 326, 444, 600
SaqAI TTAA 6 cut(s) 273, 354, 396, 471, 638, 747
Sau3AI GATC 6 cut(s) 205, 380, 870, 947, 1018, 1637
Sau96I GGNCC 2 cut(s) 236, 1117
ScaI AGTACT 2 cut(s) 703, 1573
SchI GAGTC 1 cut(s) 1468
ScrFI CCNGG 1 cut(s) 861
SfaNI GCATC 1 cut(s) 945
SfcI CTRYAG 2 cut(s) 102, 522
SfuI TTCGAA 1 cut(s) 991
SinI GGWCC 1 cut(s) 1117
SmiMI CAYNNNNRTG 3 cut(s) 326, 444, 600
SmlI CTYRAG 1 cut(s) 853
SmoI CTYRAG 1 cut(s) 853
SphI GCATGC 1 cut(s) 599
SsiI CCGC 3 cut(s) 593, 836, 1162
SspMI CTAG 5 cut(s) 165, 384, 963, 1194, 1661
StyD4I CCNGG 1 cut(s) 859
StyI CCWWGG 2 cut(s) 239, 1666
TaaI ACNGT 3 cut(s) 279, 501, 1486
TaiI ACGT 3 cut(s) 306, 897, 1296
TaqI TCGA 4 cut(s) 908, 991, 1153, 1627
TatI WGTACW 2 cut(s) 701, 1571
TauI GCSGC 2 cut(s) 595, 838
TfiI GAWTC 6 cut(s) 218, 343, 391, 772, 1324, 1405
Tru1I TTAA 6 cut(s) 273, 354, 396, 471, 638, 747
Tru9I TTAA 6 cut(s) 273, 354, 396, 471, 638, 747
TscAI CASTG 2 cut(s) 451, 1334
TseFI GTSAC 2 cut(s) 251, 1670
TseI GCWGC 8 cut(s) 98, 101, 524, 589, 901, 1226, 1361, 1721
Tsp45I GTSAC 2 cut(s) 251, 1670
TspRI CASTG 2 cut(s) 451, 1334
Van91I CCANNNNNTGG 1 cut(s) 897
VpaK11BI GGWCC 1 cut(s) 1117
XapI RAATTY 5 cut(s) 42, 659, 735, 1388, 1517
XbaI TCTAGA 1 cut(s) 383
XceI RCATGY 1 cut(s) 599
XmiI GTMKAC 1 cut(s) 281
XmnI GAANNNNTTC 1 cut(s) 560
XspI CTAG 5 cut(s) 165, 384, 963, 1194, 1661
ZrmI AGTACT 2 cut(s) 703, 1573
Zsp2I ATGCAT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.