FvH4_4g13511

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000118
Physical Location & Seq
Reverse (-)
17112623 .. 17113981
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g13511.t1

Sequence Viewer

Length: 723 bp
ATGTCCGACCAAAGATTTTTCCCACCCAATAGTGAAATCCTGCGGAGCTGTTCCAAAGAGGATGTCCGCACAGCCCTTAAAGTGCGGATGTCCCTCCGTTCTCCATCGGACAGCTCTGACGACGCAACCTCCACCCAAAATTTCAGACAAGATGGATCTCGTAGGAAAACTGGAATTCGGAGGACTCGTCAGGGAGAGAAAGTGATCGGGGACGCCTCTGGTGTCCGCTCAGGTGGAGGCACGTCGTCGTCGGGGCCCAACGGTGCAGAACAGAAGGACGTCCGCACTTTAAGGGCGTGTGGACGTCCACCTCTGATCCGGACTATATATATATACACATATTTTATTAGGTACGGATGTCCACATTTGTTTAAAGTTTTGGGTGATCTCGCCGGAAAACTAGAAAAGAACGGACTCGTCGGGGAGGGAAAGTGGTCGGGGACGCTGCTGGAGTCTTCTGGGGTGGAGGCGCGCCGTCGCCGGCGCCAGAGGGTGGAGAACGAACGGACGAACGTTCGCACTTTAAGGCCGGTGCGAACGTTCGCTTCTGATCCGCAACCTCCACCCAAAACTTCAGATAAGATTGATCTCGGTTGCAAACTTGTATTCGGCAAGTCCGTCGGCAAGAGAACTTCATCGGGGAGACCTCTAGTGTCCGCTCGGGTGGAGACGTGCAGTCGTCGGCGCTGGACGGTGGAGAACGGAGGGACGTCCACACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

26.58

Weight (kDa)

10.76

Isoelectric Point (pI)

63.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 3 cut(s) 282, 307, 713
AccB1I GGYRCC 1 cut(s) 483
AccB7I CCANNNNNTGG 1 cut(s) 493
AccBSI CCGCTC 2 cut(s) 228, 659
AccII CGCG 1 cut(s) 472
AccIII TCCGGA 1 cut(s) 318
AciI CCGC 7 cut(s) 43, 67, 85, 226, 283, 554, 657
AclI AACGTT 2 cut(s) 513, 539
AclWI GGATC 3 cut(s) 163, 310, 545
AcsI RAATTY 2 cut(s) 139, 174
AcuI CTGAAG 1 cut(s) 558
AcyI GRCGYC 5 cut(s) 213, 279, 304, 484, 710
AfaI GTAC 1 cut(s) 353
AfiI CCNNNNNNNGG 1 cut(s) 493
AhdI GACNNNNNGTC 1 cut(s) 675
AjiI CACGTC 2 cut(s) 243, 672
AluBI AGCT 2 cut(s) 48, 114
AluI AGCT 2 cut(s) 48, 114
Alw26I GTCTC 2 cut(s) 637, 662
AlwI GGATC 3 cut(s) 163, 310, 545
Ama87I CYCGRG 1 cut(s) 660
Aor13HI TCCGGA 1 cut(s) 318
AoxI GGCC 2 cut(s) 254, 527
ApaI GGGCCC 1 cut(s) 258
ApeKI GCWGC 1 cut(s) 445
ApoI RAATTY 2 cut(s) 139, 174
ArsI GACNNNNNNTTYG 2 cut(s) 48, 80
AscI GGCGCGCC 1 cut(s) 470
AspLEI GCGC 4 cut(s) 472, 474, 486, 687
AspS9I GGNCC 2 cut(s) 254, 255
AsuHPI GGTGA 1 cut(s) 395
AvaI CYCGRG 1 cut(s) 660
BaeGI GKGCMC 1 cut(s) 258
BaeI ACNNNNGTAYC 2 cut(s) 343, 376
BanI GGYRCC 1 cut(s) 483
BanII GRGCYC 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 447
BbvI GCAGC 1 cut(s) 432
BccI CCATC 2 cut(s) 112, 146
BceAI ACGGC 1 cut(s) 459
BcgI CGANNNNNNTGC 2 cut(s) 601, 635
BcoDI GTCTC 2 cut(s) 637, 662
BfaI CTAG 2 cut(s) 401, 650
BfoI RGCGCY 2 cut(s) 487, 688
BisI GCNGC 1 cut(s) 446
BlsI GCNGC 1 cut(s) 447
BmeRI GACNNNNNGTC 1 cut(s) 675
BmeT110I CYCGRG 1 cut(s) 660
BmgBI CACGTC 2 cut(s) 243, 672
BmgT120I GGNCC 2 cut(s) 254, 255
BmiI GGNNCC 3 cut(s) 255, 256, 485
BpiI GAAGAC 1 cut(s) 447
BpmI CTGGAG 1 cut(s) 470
Bpu10I CCTNAGC 1 cut(s) 229
BsaHI GRCGYC 5 cut(s) 213, 279, 304, 484, 710
BsaI GGTCTC 1 cut(s) 637
BsaWI WCCGGW 1 cut(s) 318
BsaXI ACNNNNNCTCC 8 cut(s) 113, 143, 172, 186, 202, 216, 416, 446
Bsc4I CCNNNNNNNGG 1 cut(s) 493
Bse118I RCCGGY 2 cut(s) 480, 529
Bse1I ACTGG 1 cut(s) 175
BseAI TCCGGA 1 cut(s) 318
BseGI GGATG 3 cut(s) 67, 93, 362
BseLI CCNNNNNNNGG 1 cut(s) 493
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 175
BsePI GCGCGC 1 cut(s) 470
BseSI GKGCMC 1 cut(s) 258
BseXI GCAGC 1 cut(s) 432
BsgI GTGCAG 2 cut(s) 285, 694
Bsh1236I CGCG 1 cut(s) 472
BshFI GGCC 2 cut(s) 256, 529
BshNI GGYRCC 1 cut(s) 483
BsiHKCI CYCGRG 1 cut(s) 660
BsiSI CCGG 4 cut(s) 319, 393, 481, 530
BslFI GGGAC 3 cut(s) 76, 224, 454
BslI CCNNNNNNNGG 1 cut(s) 493
BsmAI GTCTC 2 cut(s) 637, 662
BsmBI CGTCTC 1 cut(s) 662
BsmFI GGGAC 3 cut(s) 76, 224, 454
BsnI GGCC 2 cut(s) 256, 529
Bso31I GGTCTC 1 cut(s) 637
BsoBI CYCGRG 1 cut(s) 660
Bsp120I GGGCCC 1 cut(s) 254
Bsp1286I GDGCHC 1 cut(s) 258
Bsp13I TCCGGA 1 cut(s) 318
Bsp143I GATC 6 cut(s) 155, 204, 315, 385, 550, 586
BspACI CCGC 7 cut(s) 43, 67, 85, 226, 283, 554, 657
BspANI GGCC 2 cut(s) 256, 529
BspCNI CTCAG 1 cut(s) 242
BspEI TCCGGA 1 cut(s) 318
BspFNI CGCG 1 cut(s) 472
BspLI GGNNCC 3 cut(s) 255, 256, 485
BspPI GGATC 3 cut(s) 163, 310, 545
BspT107I GGYRCC 1 cut(s) 483
BspTNI GGTCTC 1 cut(s) 637
BsrBI CCGCTC 2 cut(s) 228, 659
BsrFI RCCGGY 2 cut(s) 480, 529
BsrI ACTGG 1 cut(s) 175
BssAI RCCGGY 2 cut(s) 480, 529
BssHII GCGCGC 1 cut(s) 470
BssMI GATC 6 cut(s) 155, 204, 315, 385, 550, 586
BssNI GRCGYC 5 cut(s) 213, 279, 304, 484, 710
Bst4CI ACNGT 2 cut(s) 263, 694
BstACI GRCGYC 5 cut(s) 213, 279, 304, 484, 710
BstC8I GCNNGC 2 cut(s) 472, 482
BstDEI CTNAG 1 cut(s) 229
BstF5I GGATG 3 cut(s) 67, 93, 362
BstFNI CGCG 1 cut(s) 472
BstH2I RGCGCY 2 cut(s) 487, 688
BstHHI GCGC 4 cut(s) 472, 474, 486, 687
BstKTI GATC 6 cut(s) 158, 207, 318, 388, 553, 589
BstMAI GTCTC 2 cut(s) 637, 662
BstMBI GATC 6 cut(s) 155, 204, 315, 385, 550, 586
BstSLI GKGCMC 1 cut(s) 258
BstUI CGCG 1 cut(s) 472
BstV1I GCAGC 1 cut(s) 432
BstV2I GAAGAC 1 cut(s) 447
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 2 cut(s) 256, 529
BtrI CACGTC 2 cut(s) 243, 672
BtsCI GGATG 3 cut(s) 67, 93, 362
Cac8I GCNNGC 2 cut(s) 472, 482
CfoI GCGC 4 cut(s) 472, 474, 486, 687
Cfr10I RCCGGY 2 cut(s) 480, 529
Cfr13I GGNCC 2 cut(s) 254, 255
CseI GACGC 3 cut(s) 131, 221, 451
Csp6I GTAC 1 cut(s) 352
CviJI RGCY 5 cut(s) 48, 74, 114, 256, 529
CviKI_1 RGCY 5 cut(s) 48, 74, 114, 256, 529
CviQI GTAC 1 cut(s) 352
DdeI CTNAG 1 cut(s) 229
DinI GGCGCC 1 cut(s) 485
DpnI GATC 6 cut(s) 157, 206, 317, 387, 552, 588
DpnII GATC 6 cut(s) 155, 204, 315, 385, 550, 586
DraI TTTAAA 1 cut(s) 373
DriI GACNNNNNGTC 1 cut(s) 675
Eam1105I GACNNNNNGTC 1 cut(s) 675
Eco24I GRGCYC 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 637
Eco57I CTGAAG 1 cut(s) 558
Eco88I CYCGRG 1 cut(s) 660
EcoO109I RGGNCCY 1 cut(s) 254
EcoRI GAATTC 1 cut(s) 174
EcoT38I GRGCYC 1 cut(s) 258
EgeI GGCGCC 1 cut(s) 485
EheI GGCGCC 1 cut(s) 485
Esp3I CGTCTC 1 cut(s) 662
FaiI YATR 6 cut(s) 326, 328, 330, 332, 334, 340
FaqI GGGAC 3 cut(s) 76, 224, 454
Fnu4HI GCNGC 1 cut(s) 446
FokI GGATG 3 cut(s) 74, 100, 369
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 446
FspBI CTAG 2 cut(s) 401, 650
GlaI GCGC 4 cut(s) 471, 473, 485, 686
GluI GCNGC 1 cut(s) 446
GsuI CTGGAG 1 cut(s) 470
HaeII RGCGCY 2 cut(s) 487, 688
HaeIII GGCC 2 cut(s) 256, 529
HapII CCGG 4 cut(s) 319, 393, 481, 530
HgaI GACGC 3 cut(s) 131, 221, 451
HhaI GCGC 4 cut(s) 472, 474, 486, 687
Hin1I GRCGYC 5 cut(s) 213, 279, 304, 484, 710
Hin6I GCGC 4 cut(s) 470, 472, 484, 685
HinP1I GCGC 4 cut(s) 470, 472, 484, 685
HinfI GANTC 3 cut(s) 184, 414, 452
HpaII CCGG 4 cut(s) 319, 393, 481, 530
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 4 cut(s) 302, 308, 362, 714
Hpy188I TCNGA 8 cut(s) 7, 109, 118, 146, 180, 315, 550, 577
Hpy188III TCNNGA 1 cut(s) 319
Hpy8I GTNNAC 4 cut(s) 302, 308, 362, 714
Hpy99I CGWCG 8 cut(s) 125, 247, 250, 253, 422, 480, 623, 684
HpyAV CCTTC 1 cut(s) 268
HpyCH4III ACNGT 2 cut(s) 263, 694
HpyCH4IV ACGT 7 cut(s) 242, 279, 304, 513, 539, 671, 710
HpyCH4V TGCA 3 cut(s) 266, 597, 675
HpyF3I CTNAG 1 cut(s) 229
HpySE526I ACGT 7 cut(s) 242, 279, 304, 513, 539, 671, 710
Hsp92I GRCGYC 5 cut(s) 213, 279, 304, 484, 710
HspAI GCGC 4 cut(s) 470, 472, 484, 685
KasI GGCGCC 1 cut(s) 483
Kpn2I TCCGGA 1 cut(s) 318
KroI GCCGGC 1 cut(s) 480
KroNI GCCGGC 1 cut(s) 482
Kzo9I GATC 6 cut(s) 155, 204, 315, 385, 550, 586
LmnI GCTCC 1 cut(s) 45
Lsp1109I GCAGC 1 cut(s) 432
MaeI CTAG 2 cut(s) 401, 650
MaeII ACGT 7 cut(s) 242, 279, 304, 513, 539, 671, 710
MalI GATC 6 cut(s) 157, 206, 317, 387, 552, 588
MbiI CCGCTC 2 cut(s) 228, 659
MboI GATC 6 cut(s) 155, 204, 315, 385, 550, 586
MboII GAAGA 1 cut(s) 447
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 258
MluCI AATT 2 cut(s) 139, 174
Mly113I GGCGCC 1 cut(s) 484
MlyI GAGTC 3 cut(s) 178, 408, 461
MmeI TCCRAC 1 cut(s) 30
MreI CGCCGGCG 1 cut(s) 480
MroI TCCGGA 1 cut(s) 318
MroNI GCCGGC 1 cut(s) 480
MseI TTAA 5 cut(s) 78, 290, 372, 524, 721
MspI CCGG 4 cut(s) 319, 393, 481, 530
MvnI CGCG 1 cut(s) 472
NaeI GCCGGC 1 cut(s) 482
NarI GGCGCC 1 cut(s) 484
NdeII GATC 6 cut(s) 155, 204, 315, 385, 550, 586
NgoMIV GCCGGC 1 cut(s) 480
NlaIV GGNNCC 3 cut(s) 255, 256, 485
PalAI GGCGCGCC 1 cut(s) 470
PauI GCGCGC 1 cut(s) 470
PcsI WCGNNNNNNNCGW 2 cut(s) 184, 615
PdiI GCCGGC 1 cut(s) 482
PflMI CCANNNNNTGG 1 cut(s) 493
PkrI GCNGC 1 cut(s) 447
PleI GAGTC 3 cut(s) 178, 408, 460
PluTI GGCGCC 1 cut(s) 487
PpsI GAGTC 3 cut(s) 178, 408, 460
Psp1406I AACGTT 2 cut(s) 513, 539
PspN4I GGNNCC 3 cut(s) 255, 256, 485
PspOMI GGGCCC 1 cut(s) 254
PspPI GGNCC 2 cut(s) 254, 255
PsuI RGATCY 1 cut(s) 155
PteI GCGCGC 1 cut(s) 470
RsaI GTAC 1 cut(s) 353
RsaNI GTAC 1 cut(s) 352
SaqAI TTAA 5 cut(s) 78, 290, 372, 524, 721
SatI GCNGC 1 cut(s) 446
Sau3AI GATC 6 cut(s) 155, 204, 315, 385, 550, 586
Sau96I GGNCC 2 cut(s) 254, 255
SchI GAGTC 3 cut(s) 178, 408, 461
SduI GDGCHC 1 cut(s) 258
SfoI GGCGCC 1 cut(s) 485
SgrAI CRCCGGYG 1 cut(s) 480
SgsI GGCGCGCC 1 cut(s) 470
Sse9I AATT 2 cut(s) 139, 174
SsiI CCGC 7 cut(s) 43, 67, 85, 226, 283, 554, 657
SspDI GGCGCC 1 cut(s) 483
SspMI CTAG 2 cut(s) 401, 650
TaaI ACNGT 2 cut(s) 263, 694
TaiI ACGT 7 cut(s) 245, 282, 307, 516, 542, 674, 713
TasI AATT 2 cut(s) 139, 174
Tru1I TTAA 5 cut(s) 78, 290, 372, 524, 721
Tru9I TTAA 5 cut(s) 78, 290, 372, 524, 721
TseI GCWGC 1 cut(s) 445
TspDTI ATGAA 1 cut(s) 624
TspGWI ACGGA 6 cut(s) 86, 369, 426, 520, 607, 717
Van91I CCANNNNNTGG 1 cut(s) 493
XapI RAATTY 2 cut(s) 139, 174
XspI CTAG 2 cut(s) 401, 650
ZraI GACGTC 3 cut(s) 280, 305, 711
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.