FvH4_6g28331

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Reverse (-)
21808426 .. 21814870
6445 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28331.t1

Sequence Viewer

Length: 804 bp
ATGATTTCTGAGGACAGTGAAAGGATCTTTGTAATCAAGTTCAGGGAGCAAGAGAGTGAGAGACGAGGGATCACGTCCTCAATTGTTCTTCCACAATTCGATACTTTTCTTGGTAGACAGTCGTCGTGGTCGTCGAGTATCTGGATCGGCCCGATTCAGATTGTGGCCGAGCGTCGGAAGAATCGGGATGGATCTGAGCGTCAGAAGAATCGGGATGGATCTGAGCGTCATCAAAGAGACGACGACGCCGTTCACATCCAAGCTTCATCAACGTTCATTGTCGGTATCCCACATTGTCAGTGTCTAGCCGTCGCCGTCGCCGTTGTCTTCATTTTTTGTTCAATCGTTGATGATGATGATGAGAGAAAGAGAAAAGATGGGGACTCTGGCGCCGACGACGGCACTCCTCCACCCGAGCGGATACCAGAGGCATCCTCGATGACTTTCTCTTGCCAACGAGTCCGCCGAATACCAGTTTGTAGCCGAGATCGATCTTATCTAAAGTTTTGGGTGGAGGTTGTTGCCCAGACCTTCAAATCTGATCTCCATGGTCTTCATCTTCATGGTAAAGTCATCGGGGATGTCTGTGGTGTCCACTCGAGTGGAGGAGCGCCGTCGTTGGCGCCGAATGGTGGAGAACGGAGAGACGTCCGTACTTTAAGGGCGGTGCGGACGTCCGCCTCTAATCCGATACGGGTCGAATCTGGGTATGAAACCAAGATCGAACTCACCGCCGTAGAACGATTCAAAGAACCTAGTTTTTACATTTTCAAATCTCAGCCGTTGTGGATCAATTCTCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

268

Amino Acids

30.08

Weight (kDa)

8.23

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 651, 677
AccB1I GGYRCC 2 cut(s) 389, 622
AccBSI CCGCTC 1 cut(s) 418
AccI GTMKAC 1 cut(s) 115
AciI CCGC 6 cut(s) 418, 463, 665, 670, 678, 732
AclI AACGTT 1 cut(s) 272
AclWI GGATC 6 cut(s) 32, 77, 152, 199, 226, 797
AcoI YGGCCR 1 cut(s) 165
AcyI GRCGYC 5 cut(s) 246, 390, 623, 648, 674
AfaI GTAC 1 cut(s) 655
AfiI CCNNNNNNNGG 2 cut(s) 174, 632
AgsI TTSAA 4 cut(s) 342, 535, 748, 772
AjiI CACGTC 1 cut(s) 75
AleI CACNNNNGTG 1 cut(s) 600
AluBI AGCT 1 cut(s) 263
AluI AGCT 1 cut(s) 263
Alw26I GTCTC 3 cut(s) 55, 231, 639
AlwI GGATC 6 cut(s) 32, 77, 152, 199, 226, 797
Ama87I CYCGRG 2 cut(s) 413, 598
AoxI GGCC 2 cut(s) 148, 165
AspLEI GCGC 3 cut(s) 392, 613, 625
AspS9I GGNCC 1 cut(s) 149
AsuHPI GGTGA 1 cut(s) 721
AvaI CYCGRG 2 cut(s) 413, 598
BanI GGYRCC 2 cut(s) 389, 622
BbsI GAAGAC 2 cut(s) 319, 545
BccI CCATC 3 cut(s) 182, 209, 371
BceAI ACGGC 8 cut(s) 233, 293, 299, 305, 415, 598, 719, 766
BciVI GTATCC 2 cut(s) 296, 414
BcoDI GTCTC 3 cut(s) 55, 231, 639
BfaI CTAG 2 cut(s) 305, 756
BfoI RGCGCY 3 cut(s) 393, 614, 626
BfuI GTATCC 2 cut(s) 296, 414
BmeT110I CYCGRG 2 cut(s) 413, 598
BmgBI CACGTC 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 149
BmiI GGNNCC 2 cut(s) 391, 624
BmsI GCATC 1 cut(s) 440
BoxI GACNNNNGTC 1 cut(s) 121
BpiI GAAGAC 2 cut(s) 319, 545
BplI GAGNNNNNCTC 2 cut(s) 419, 451
Bsa29I ATCGAT 1 cut(s) 490
BsaHI GRCGYC 5 cut(s) 246, 390, 623, 648, 674
BsaJI CCNNGG 1 cut(s) 547
Bsc4I CCNNNNNNNGG 2 cut(s) 174, 632
Bse1I ACTGG 1 cut(s) 473
BseCI ATCGAT 1 cut(s) 490
BseDI CCNNGG 1 cut(s) 547
BseGI GGATG 5 cut(s) 193, 220, 255, 431, 586
BseLI CCNNNNNNNGG 2 cut(s) 174, 632
BseMII CTCAG 3 cut(s) 186, 213, 791
BseNI ACTGG 1 cut(s) 473
BseRI GAGGAG 2 cut(s) 396, 621
BshFI GGCC 2 cut(s) 150, 167
BshNI GGYRCC 2 cut(s) 389, 622
BshVI ATCGAT 1 cut(s) 490
BsiHKCI CYCGRG 2 cut(s) 413, 598
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 174, 632
BsmAI GTCTC 3 cut(s) 55, 231, 639
BsmBI CGTCTC 3 cut(s) 55, 231, 639
BsmFI GGGAC 1 cut(s) 395
BsnI GGCC 2 cut(s) 150, 167
BsoBI CYCGRG 2 cut(s) 413, 598
Bsp19I CCATGG 1 cut(s) 547
BspACI CCGC 6 cut(s) 418, 463, 665, 670, 678, 732
BspANI GGCC 2 cut(s) 150, 167
BspCNI CTCAG 3 cut(s) 187, 214, 790
BspDI ATCGAT 1 cut(s) 490
BspLI GGNNCC 2 cut(s) 391, 624
BspPI GGATC 6 cut(s) 32, 77, 152, 199, 226, 797
BspT107I GGYRCC 2 cut(s) 389, 622
BsrBI CCGCTC 1 cut(s) 418
BsrI ACTGG 1 cut(s) 473
BssECI CCNNGG 1 cut(s) 547
BssNI GRCGYC 5 cut(s) 246, 390, 623, 648, 674
BssT1I CCWWGG 1 cut(s) 547
Bst4CI ACNGT 2 cut(s) 17, 120
BstACI GRCGYC 5 cut(s) 246, 390, 623, 648, 674
BstDEI CTNAG 4 cut(s) 9, 195, 222, 777
BstDSI CCRYGG 1 cut(s) 547
BstF5I GGATG 5 cut(s) 193, 220, 255, 431, 586
BstH2I RGCGCY 3 cut(s) 393, 614, 626
BstHHI GCGC 3 cut(s) 392, 613, 625
BstMAI GTCTC 3 cut(s) 55, 231, 639
BstPAI GACNNNNGTC 1 cut(s) 121
BstV2I GAAGAC 2 cut(s) 319, 545
BstX2I RGATCY 3 cut(s) 24, 191, 218
BstXI CCANNNNNNTGG 1 cut(s) 602
BstYI RGATCY 3 cut(s) 24, 191, 218
Bsu15I ATCGAT 1 cut(s) 490
BsuI GTATCC 2 cut(s) 296, 414
BsuRI GGCC 2 cut(s) 150, 167
BsuTUI ATCGAT 1 cut(s) 490
BtgI CCRYGG 1 cut(s) 547
BtrI CACGTC 1 cut(s) 75
BtsCI GGATG 5 cut(s) 193, 220, 255, 431, 586
BtsIMutI CAGTG 2 cut(s) 22, 305
CfoI GCGC 3 cut(s) 392, 613, 625
Cfr13I GGNCC 1 cut(s) 149
ClaI ATCGAT 1 cut(s) 490
CseI GACGC 4 cut(s) 161, 188, 215, 254
Csp6I GTAC 1 cut(s) 654
CviAII CATG 2 cut(s) 548, 563
CviJI RGCY 6 cut(s) 150, 167, 263, 308, 483, 781
CviKI_1 RGCY 6 cut(s) 150, 167, 263, 308, 483, 781
CviQI GTAC 1 cut(s) 654
DdeI CTNAG 4 cut(s) 9, 195, 222, 777
DinI GGCGCC 2 cut(s) 391, 624
EaeI YGGCCR 1 cut(s) 165
EciI GGCGGA 2 cut(s) 452, 667
Eco130I CCWWGG 1 cut(s) 547
Eco88I CYCGRG 2 cut(s) 413, 598
EcoT14I CCWWGG 1 cut(s) 547
EgeI GGCGCC 2 cut(s) 391, 624
EheI GGCGCC 2 cut(s) 391, 624
ErhI CCWWGG 1 cut(s) 547
Esp3I CGTCTC 3 cut(s) 55, 231, 639
FaeI CATG 2 cut(s) 551, 566
FaiI YATR 3 cut(s) 549, 564, 711
FaqI GGGAC 1 cut(s) 395
FatI CATG 2 cut(s) 547, 562
FblI GTMKAC 1 cut(s) 115
FokI GGATG 5 cut(s) 200, 227, 242, 418, 593
FspBI CTAG 2 cut(s) 305, 756
GlaI GCGC 3 cut(s) 391, 612, 624
HaeII RGCGCY 3 cut(s) 393, 614, 626
HaeIII GGCC 2 cut(s) 150, 167
HgaI GACGC 4 cut(s) 161, 188, 215, 254
HhaI GCGC 3 cut(s) 392, 613, 625
Hin1I GRCGYC 5 cut(s) 246, 390, 623, 648, 674
Hin1II CATG 2 cut(s) 551, 566
Hin6I GCGC 3 cut(s) 390, 611, 623
HinP1I GCGC 3 cut(s) 390, 611, 623
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 7 cut(s) 154, 181, 208, 383, 459, 701, 744
HphI GGTGA 1 cut(s) 721
Hpy166II GTNNAC 3 cut(s) 116, 253, 595
Hpy188I TCNGA 8 cut(s) 10, 159, 177, 196, 204, 223, 541, 690
Hpy188III TCNNGA 3 cut(s) 142, 185, 212
Hpy8I GTNNAC 3 cut(s) 116, 253, 595
HpyAV CCTTC 1 cut(s) 541
HpyCH4III ACNGT 2 cut(s) 17, 120
HpyCH4IV ACGT 4 cut(s) 74, 272, 648, 674
HpyF3I CTNAG 4 cut(s) 9, 195, 222, 777
HpySE526I ACGT 4 cut(s) 74, 272, 648, 674
Hsp92I GRCGYC 5 cut(s) 246, 390, 623, 648, 674
Hsp92II CATG 2 cut(s) 551, 566
HspAI GCGC 3 cut(s) 390, 611, 623
KasI GGCGCC 2 cut(s) 389, 622
LmnI GCTCC 2 cut(s) 46, 608
LpnPI CCDG 7 cut(s) 28, 127, 372, 438, 486, 539, 690
LweI GCATC 1 cut(s) 440
MaeI CTAG 2 cut(s) 305, 756
MaeII ACGT 4 cut(s) 74, 272, 648, 674
MbiI CCGCTC 1 cut(s) 418
MboII GAAGA 6 cut(s) 80, 190, 217, 319, 545, 551
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 3 cut(s) 24, 191, 218
MluCI AATT 3 cut(s) 81, 95, 793
Mly113I GGCGCC 2 cut(s) 390, 623
MlyI GAGTC 2 cut(s) 377, 468
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 9 cut(s) 4, 59, 88, 417, 421, 445, 508, 599, 691
MseI TTAA 1 cut(s) 659
MslI CAYNNNNRTG 2 cut(s) 561, 600
MunI CAATTG 1 cut(s) 81
NarI GGCGCC 2 cut(s) 390, 623
NcoI CCATGG 1 cut(s) 547
NlaIII CATG 2 cut(s) 551, 566
NlaIV GGNNCC 2 cut(s) 391, 624
NmeAIII GCCGAG 2 cut(s) 193, 509
OliI CACNNNNGTG 1 cut(s) 600
PaeR7I CTCGAG 1 cut(s) 598
PcsI WCGNNNNNNNCGW 6 cut(s) 128, 131, 246, 318, 463, 623
PfeI GAWTC 5 cut(s) 154, 181, 208, 701, 744
PleI GAGTC 2 cut(s) 377, 467
PluTI GGCGCC 2 cut(s) 393, 626
PpsI GAGTC 2 cut(s) 377, 467
PshAI GACNNNNGTC 1 cut(s) 121
Psp1406I AACGTT 1 cut(s) 272
PspN4I GGNNCC 2 cut(s) 391, 624
PspPI GGNCC 1 cut(s) 149
PspXI VCTCGAGB 1 cut(s) 598
PsuI RGATCY 3 cut(s) 24, 191, 218
RsaI GTAC 1 cut(s) 655
RsaNI GTAC 1 cut(s) 654
RseI CAYNNNNRTG 2 cut(s) 561, 600
SaqAI TTAA 1 cut(s) 659
Sau96I GGNCC 1 cut(s) 149
SchI GAGTC 2 cut(s) 377, 468
SetI ASST 8 cut(s) 77, 265, 275, 519, 533, 651, 677, 757
SfaNI GCATC 1 cut(s) 440
SfoI GGCGCC 2 cut(s) 391, 624
Sfr274I CTCGAG 1 cut(s) 598
SlaI CTCGAG 1 cut(s) 598
SmiMI CAYNNNNRTG 2 cut(s) 561, 600
SmlI CTYRAG 1 cut(s) 598
SmoI CTYRAG 1 cut(s) 598
Sse9I AATT 3 cut(s) 81, 95, 793
SsiI CCGC 6 cut(s) 418, 463, 665, 670, 678, 732
SspDI GGCGCC 2 cut(s) 389, 622
SspMI CTAG 2 cut(s) 305, 756
StyI CCWWGG 1 cut(s) 547
TaaI ACNGT 2 cut(s) 17, 120
TaiI ACGT 4 cut(s) 77, 275, 651, 677
TaqI TCGA 7 cut(s) 99, 134, 437, 490, 599, 699, 723
TasI AATT 3 cut(s) 81, 95, 793
TfiI GAWTC 5 cut(s) 154, 181, 208, 701, 744
Tru1I TTAA 1 cut(s) 659
Tru9I TTAA 1 cut(s) 659
TscAI CASTG 2 cut(s) 22, 305
TspDTI ATGAA 6 cut(s) 255, 265, 319, 545, 551, 726
TspGWI ACGGA 2 cut(s) 641, 655
TspRI CASTG 2 cut(s) 22, 305
XhoI CTCGAG 1 cut(s) 598
XmiI GTMKAC 1 cut(s) 115
XspI CTAG 2 cut(s) 305, 756
ZraI GACGTC 2 cut(s) 649, 675
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.