FvH4_1g18931

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000118
Physical Location & Seq
Reverse (-)
11229340 .. 11231694
2355 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g18931.t1

Sequence Viewer

Length: 468 bp
ATGGCGCGTCTGCAGGCTTCGTTTTCGTTTGTGGTGGCTTATGATCCGGGAAGCTCTAGTTGTTGTTGTTTTACATTAGTCGAGGTTGCAGTTTTTAAGGTTGCGATTCTTGACATCTTTAAGTCGTCGAGGGTCAGCTTAGAGGTGACAGAGTTTGCGACGGCCAGAGCTCCTAGATCTCATTTTGGTCTAGGGATTGCTCTTGGTGACGCCAACCCACAAGCAATATCTTATTTTCATGATGCTGGATCAGAGGCGCACGTTCGCATCGGCCCTAAAGTGCAGACGTCCCTCCGTTCGCCACCGTACGGCACCGGGGAGGGCGTGCCTCTACCCCAGCGGACTCCAGCAGCATCCCCGACCATTTTCTCTCCCCGGCGAGTTCGCCGAATTCCAGTTTTCGCTGGGGTGGAGGTGCGCCCTCGTCAGTGCCGGACAGTGGAAAACGGAGAGATGTCCACACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

16.73

Weight (kDa)

9.38

Isoelectric Point (pI)

51.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 290
AccB1I GGYRCC 1 cut(s) 311
AccII CGCG 1 cut(s) 7
AciI CCGC 1 cut(s) 340
AclWI GGATC 2 cut(s) 38, 256
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 1 cut(s) 390
AcyI GRCGYC 2 cut(s) 210, 287
AfaI GTAC 1 cut(s) 308
AfiI CCNNNNNNNGG 2 cut(s) 308, 439
AluBI AGCT 3 cut(s) 54, 138, 170
AluI AGCT 3 cut(s) 54, 138, 170
Alw21I GWGCWC 1 cut(s) 172
AlwI GGATC 2 cut(s) 38, 256
AoxI GGCC 2 cut(s) 162, 271
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 1 cut(s) 390
AspLEI GCGC 3 cut(s) 7, 259, 420
AspS9I GGNCC 1 cut(s) 272
AsuC2I CCSGG 3 cut(s) 48, 316, 376
AsuHPI GGTGA 2 cut(s) 157, 218
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 1 cut(s) 172
Bbv12I GWGCWC 1 cut(s) 172
BbvI GCAGC 1 cut(s) 362
BceAI ACGGC 2 cut(s) 177, 325
BcnI CCSGG 3 cut(s) 48, 316, 376
BfaI CTAG 3 cut(s) 57, 174, 191
BfmI CTRYAG 1 cut(s) 11
BglII AGATCT 1 cut(s) 176
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
Bme1390I CCNGG 3 cut(s) 48, 316, 376
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 3 cut(s) 48, 316, 376
BmsI GCATC 3 cut(s) 232, 276, 362
BpmI CTGGAG 1 cut(s) 330
BpuMI CCSGG 3 cut(s) 48, 316, 376
BsaHI GRCGYC 2 cut(s) 210, 287
BsaJI CCNNGG 2 cut(s) 315, 374
Bsc4I CCNNNNNNNGG 2 cut(s) 308, 439
Bse1I ACTGG 1 cut(s) 395
BseDI CCNNGG 2 cut(s) 315, 374
BseGI GGATG 1 cut(s) 353
BseLI CCNNNNNNNGG 2 cut(s) 308, 439
BseNI ACTGG 1 cut(s) 395
BseXI GCAGC 1 cut(s) 362
BseYI CCCAGC 2 cut(s) 336, 404
BsgI GTGCAG 1 cut(s) 302
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 2 cut(s) 164, 273
BshNI GGYRCC 1 cut(s) 311
BsiHKAI GWGCWC 1 cut(s) 172
BsiSI CCGG 4 cut(s) 47, 315, 376, 433
BsiWI CGTACG 1 cut(s) 306
BslFI GGGAC 1 cut(s) 274
BslI CCNNNNNNNGG 2 cut(s) 308, 439
BsmFI GGGAC 1 cut(s) 274
BsnI GGCC 2 cut(s) 164, 273
Bsp1286I GDGCHC 1 cut(s) 172
Bsp143I GATC 3 cut(s) 43, 176, 248
BspACI CCGC 1 cut(s) 340
BspANI GGCC 2 cut(s) 164, 273
BspFNI CGCG 1 cut(s) 7
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 313
BspMAI CTGCAG 1 cut(s) 15
BspPI GGATC 2 cut(s) 38, 256
BspT107I GGYRCC 1 cut(s) 311
BsrI ACTGG 1 cut(s) 395
BssECI CCNNGG 2 cut(s) 315, 374
BssMI GATC 3 cut(s) 43, 176, 248
BssNI GRCGYC 2 cut(s) 210, 287
Bst4CI ACNGT 2 cut(s) 306, 439
BstACI GRCGYC 2 cut(s) 210, 287
BstC8I GCNNGC 2 cut(s) 15, 326
BstDEI CTNAG 1 cut(s) 139
BstF5I GGATG 1 cut(s) 353
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 3 cut(s) 7, 259, 420
BstKTI GATC 3 cut(s) 46, 179, 251
BstMBI GATC 3 cut(s) 43, 176, 248
BstSCI CCNGG 3 cut(s) 46, 314, 374
BstSFI CTRYAG 1 cut(s) 11
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 1 cut(s) 362
BstX2I RGATCY 1 cut(s) 176
BstYI RGATCY 1 cut(s) 176
BsuRI GGCC 2 cut(s) 164, 273
BtsCI GGATG 1 cut(s) 353
BtsIMutI CAGTG 2 cut(s) 434, 444
Cac8I GCNNGC 2 cut(s) 15, 326
CciI TCATGA 1 cut(s) 238
CfoI GCGC 3 cut(s) 7, 259, 420
Cfr13I GGNCC 1 cut(s) 272
CseI GACGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 307
CviAII CATG 1 cut(s) 239
CviJI RGCY 7 cut(s) 17, 38, 54, 138, 164, 170, 273
CviKI_1 RGCY 7 cut(s) 17, 38, 54, 138, 164, 170, 273
CviQI GTAC 1 cut(s) 307
DdeI CTNAG 1 cut(s) 139
DpnI GATC 3 cut(s) 45, 178, 250
DpnII GATC 3 cut(s) 43, 176, 248
EaeI YGGCCR 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 170
Eco24I GRGCYC 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 170
EcoICRI GAGCTC 1 cut(s) 170
EcoRI GAATTC 1 cut(s) 390
EcoT38I GRGCYC 1 cut(s) 172
FaeI CATG 1 cut(s) 242
FaiI YATR 2 cut(s) 42, 240
FaqI GGGAC 1 cut(s) 274
FatI CATG 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 1 cut(s) 340
FriOI GRGCYC 1 cut(s) 172
Fsp4HI GCNGC 1 cut(s) 351
FspBI CTAG 3 cut(s) 57, 174, 191
GlaI GCGC 3 cut(s) 6, 258, 419
GluI GCNGC 1 cut(s) 351
GsaI CCCAGC 2 cut(s) 340, 408
GsuI CTGGAG 1 cut(s) 330
HaeIII GGCC 2 cut(s) 164, 273
HapII CCGG 4 cut(s) 47, 315, 376, 433
HgaI GACGC 1 cut(s) 218
HhaI GCGC 3 cut(s) 7, 259, 420
Hin1I GRCGYC 2 cut(s) 210, 287
Hin1II CATG 1 cut(s) 242
Hin6I GCGC 3 cut(s) 5, 257, 418
HinP1I GCGC 3 cut(s) 5, 257, 418
HinfI GANTC 2 cut(s) 106, 343
HpaII CCGG 4 cut(s) 47, 315, 376, 433
HphI GGTGA 2 cut(s) 157, 218
Hpy166II GTNNAC 1 cut(s) 459
Hpy188I TCNGA 1 cut(s) 253
Hpy188III TCNNGA 2 cut(s) 110, 239
Hpy8I GTNNAC 1 cut(s) 459
Hpy99I CGWCG 2 cut(s) 130, 163
HpyCH4III ACNGT 2 cut(s) 306, 439
HpyCH4IV ACGT 2 cut(s) 261, 287
HpyCH4V TGCA 3 cut(s) 13, 89, 283
HpyF3I CTNAG 1 cut(s) 139
HpySE526I ACGT 2 cut(s) 261, 287
Hsp92I GRCGYC 2 cut(s) 210, 287
Hsp92II CATG 1 cut(s) 242
HspAI GCGC 3 cut(s) 5, 257, 418
Kzo9I GATC 3 cut(s) 43, 176, 248
LmnI GCTCC 1 cut(s) 175
Lsp1109I GCAGC 1 cut(s) 362
LweI GCATC 3 cut(s) 232, 276, 362
MaeI CTAG 3 cut(s) 57, 174, 191
MaeII ACGT 2 cut(s) 261, 287
MaeIII GTNAC 2 cut(s) 145, 206
MalI GATC 3 cut(s) 45, 178, 250
MboI GATC 3 cut(s) 43, 176, 248
MflI RGATCY 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 172
MluCI AATT 1 cut(s) 390
MlyI GAGTC 1 cut(s) 337
MnlI CCTC 9 cut(s) 76, 123, 136, 247, 302, 313, 339, 406, 432
MseI TTAA 3 cut(s) 96, 120, 466
MspA1I CMGCKG 1 cut(s) 340
MspI CCGG 4 cut(s) 47, 315, 376, 433
MspR9I CCNGG 3 cut(s) 48, 316, 376
MvnI CGCG 1 cut(s) 7
NciI CCSGG 3 cut(s) 48, 316, 376
NdeII GATC 3 cut(s) 43, 176, 248
NlaIII CATG 1 cut(s) 242
NlaIV GGNNCC 1 cut(s) 313
NmuCI GTSAC 2 cut(s) 145, 206
PagI TCATGA 1 cut(s) 238
PfeI GAWTC 1 cut(s) 106
Pfl23II CGTACG 1 cut(s) 306
PfoI TCCNGGA 1 cut(s) 46
PkrI GCNGC 1 cut(s) 352
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
Psp124BI GAGCTC 1 cut(s) 172
PspFI CCCAGC 2 cut(s) 336, 404
PspLI CGTACG 1 cut(s) 306
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 1 cut(s) 272
PstI CTGCAG 1 cut(s) 15
PsuI RGATCY 1 cut(s) 176
RsaI GTAC 1 cut(s) 308
RsaNI GTAC 1 cut(s) 307
SacI GAGCTC 1 cut(s) 172
SaqAI TTAA 3 cut(s) 96, 120, 466
SatI GCNGC 1 cut(s) 351
Sau3AI GATC 3 cut(s) 43, 176, 248
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 3 cut(s) 48, 316, 376
SduI GDGCHC 1 cut(s) 172
SetI ASST 9 cut(s) 56, 87, 102, 140, 147, 172, 264, 290, 417
SfaNI GCATC 3 cut(s) 232, 276, 362
SfcI CTRYAG 1 cut(s) 11
Sse9I AATT 1 cut(s) 390
SsiI CCGC 1 cut(s) 340
SspMI CTAG 3 cut(s) 57, 174, 191
SstI GAGCTC 1 cut(s) 172
StyD4I CCNGG 3 cut(s) 46, 314, 374
TaaI ACNGT 2 cut(s) 306, 439
TaiI ACGT 2 cut(s) 264, 290
TaqI TCGA 2 cut(s) 81, 128
TasI AATT 1 cut(s) 390
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 3 cut(s) 96, 120, 466
Tru9I TTAA 3 cut(s) 96, 120, 466
TscAI CASTG 2 cut(s) 434, 444
TseFI GTSAC 2 cut(s) 145, 206
TseI GCWGC 1 cut(s) 350
Tsp45I GTSAC 2 cut(s) 145, 206
TspDTI ATGAA 1 cut(s) 227
TspGWI ACGGA 2 cut(s) 284, 462
TspRI CASTG 2 cut(s) 434, 444
XapI RAATTY 1 cut(s) 390
XspI CTAG 3 cut(s) 57, 174, 191
ZraI GACGTC 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.