FvH4_1g19242

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000118
Physical Location & Seq
Forward (+)
11454089 .. 11458501
4413 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g19242.t1

Sequence Viewer

Length: 411 bp
ATGGAAGAAAACAAGACAAGTGATGTGTTGACGACGTCGAGAAGGTCCTATTGCTGGTGGTTCACCGTCGAAAAGCCACCGGAGACGGACTTATTTTGGGTCGACGGGCGCGCCTCCACCCTAGCGGACTCCAGCAGCTTCCCTGACCACTTTTCATCCCCGGCGAGTCCGCCGAATTCCAGTTTTCCGGCGAGATCGACTTTATTTGAAGTTTTGGGTGATCTCGCCGAAAAACTGGAAAATAACGGACTCGCCGGGGATGGAAATGGCTTGACTGAGACATCGATTAGGGGTTTAGAAGCCTTGAAGGTTCTTGAGACCTCTATAGTCGAGACCGGTGAGAGAAGAAATCCTTGGTCTCAATCGCGTGTCTCAAGGTCGGTGGAGAAGAACTGTCTCTGGGAGCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.14

Weight (kDa)

4.73

Isoelectric Point (pI)

61.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 102
AccII CGCG 2 cut(s) 111, 367
AciI CCGC 2 cut(s) 125, 170
AcsI RAATTY 1 cut(s) 175
AcyI GRCGYC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 54
AgeI ACCGGT 1 cut(s) 335
AgsI TTSAA 2 cut(s) 209, 307
AjuI GAANNNNNNNTTGG 2 cut(s) 337, 369
AluBI AGCT 1 cut(s) 138
AluI AGCT 1 cut(s) 138
Alw26I GTCTC 7 cut(s) 77, 272, 311, 326, 363, 376, 401
ApeKI GCWGC 1 cut(s) 135
ApoI RAATTY 1 cut(s) 175
AscI GGCGCGCC 1 cut(s) 109
AsiGI ACCGGT 1 cut(s) 335
AspLEI GCGC 2 cut(s) 111, 113
AspS9I GGNCC 1 cut(s) 45
AsuC2I CCSGG 2 cut(s) 161, 256
AsuHPI GGTGA 3 cut(s) 55, 230, 350
AvaII GGWCC 1 cut(s) 45
BbvI GCAGC 1 cut(s) 147
BccI CCATC 1 cut(s) 254
BceAI ACGGC 1 cut(s) 391
BcnI CCSGG 2 cut(s) 161, 256
BcoDI GTCTC 7 cut(s) 77, 272, 311, 326, 363, 376, 401
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 324
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
Bme1390I CCNGG 2 cut(s) 161, 256
Bme18I GGWCC 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 1 cut(s) 405
BmrFI CCNGG 2 cut(s) 161, 256
BpmI CTGGAG 1 cut(s) 115
BpuEI CTTGAG 2 cut(s) 335, 358
BpuMI CCSGG 2 cut(s) 161, 256
Bsa29I ATCGAT 1 cut(s) 284
BsaHI GRCGYC 1 cut(s) 35
BsaI GGTCTC 3 cut(s) 311, 326, 363
BsaJI CCNNGG 3 cut(s) 159, 255, 353
BsaWI WCCGGW 2 cut(s) 79, 335
Bsc4I CCNNNNNNNGG 1 cut(s) 54
Bse118I RCCGGY 1 cut(s) 335
Bse1I ACTGG 2 cut(s) 180, 240
BseCI ATCGAT 1 cut(s) 284
BseDI CCNNGG 3 cut(s) 159, 255, 353
BseGI GGATG 2 cut(s) 155, 265
BseLI CCNNNNNNNGG 1 cut(s) 54
BseMII CTCAG 1 cut(s) 267
BseNI ACTGG 2 cut(s) 180, 240
BsePI GCGCGC 1 cut(s) 109
BseXI GCAGC 1 cut(s) 147
Bsh1236I CGCG 2 cut(s) 111, 367
BshTI ACCGGT 1 cut(s) 335
BshVI ATCGAT 1 cut(s) 284
BsiSI CCGG 5 cut(s) 80, 161, 188, 255, 336
BslI CCNNNNNNNGG 1 cut(s) 54
BsmAI GTCTC 7 cut(s) 77, 272, 311, 326, 363, 376, 401
BsmBI CGTCTC 1 cut(s) 77
Bso31I GGTCTC 3 cut(s) 311, 326, 363
Bsp143I GATC 2 cut(s) 194, 220
BspACI CCGC 2 cut(s) 125, 170
BspCNI CTCAG 1 cut(s) 268
BspDI ATCGAT 1 cut(s) 284
BspFNI CGCG 2 cut(s) 111, 367
BspLI GGNNCC 1 cut(s) 405
BspTNI GGTCTC 3 cut(s) 311, 326, 363
BsrFI RCCGGY 1 cut(s) 335
BsrI ACTGG 2 cut(s) 180, 240
BssAI RCCGGY 1 cut(s) 335
BssECI CCNNGG 3 cut(s) 159, 255, 353
BssHII GCGCGC 1 cut(s) 109
BssMI GATC 2 cut(s) 194, 220
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 353
Bst4CI ACNGT 2 cut(s) 67, 395
BstACI GRCGYC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 1 cut(s) 276
BstF5I GGATG 2 cut(s) 155, 265
BstFNI CGCG 2 cut(s) 111, 367
BstHHI GCGC 2 cut(s) 111, 113
BstKTI GATC 2 cut(s) 197, 223
BstMAI GTCTC 7 cut(s) 77, 272, 311, 326, 363, 376, 401
BstMBI GATC 2 cut(s) 194, 220
BstSCI CCNGG 2 cut(s) 159, 254
BstSFI CTRYAG 1 cut(s) 324
BstUI CGCG 2 cut(s) 111, 367
BstV1I GCAGC 1 cut(s) 147
Bsu15I ATCGAT 1 cut(s) 284
BsuTUI ATCGAT 1 cut(s) 284
BtsCI GGATG 2 cut(s) 155, 265
Cac8I GCNNGC 1 cut(s) 111
CfoI GCGC 2 cut(s) 111, 113
Cfr10I RCCGGY 1 cut(s) 335
Cfr13I GGNCC 1 cut(s) 45
ClaI ATCGAT 1 cut(s) 284
CspAI ACCGGT 1 cut(s) 335
CspCI CAANNNNNGTGG 2 cut(s) 363, 398
CviJI RGCY 5 cut(s) 76, 138, 270, 302, 406
CviKI_1 RGCY 5 cut(s) 76, 138, 270, 302, 406
DdeI CTNAG 1 cut(s) 276
DpnI GATC 2 cut(s) 196, 222
DpnII GATC 2 cut(s) 194, 220
EciI GGCGGA 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 353
Eco31I GGTCTC 3 cut(s) 311, 326, 363
Eco47I GGWCC 1 cut(s) 45
EcoO109I RGGNCCY 1 cut(s) 45
EcoRI GAATTC 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 353
ErhI CCWWGG 1 cut(s) 353
Esp3I CGTCTC 1 cut(s) 77
FaiI YATR 1 cut(s) 326
FalI AAGNNNNNCTT 2 cut(s) 337, 369
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 1 cut(s) 136
FokI GGATG 2 cut(s) 142, 272
Fsp4HI GCNGC 1 cut(s) 136
FspBI CTAG 1 cut(s) 122
GlaI GCGC 2 cut(s) 110, 112
GluI GCNGC 1 cut(s) 136
GsuI CTGGAG 1 cut(s) 115
HapII CCGG 5 cut(s) 80, 161, 188, 255, 336
HhaI GCGC 2 cut(s) 111, 113
Hin1I GRCGYC 1 cut(s) 35
Hin6I GCGC 2 cut(s) 109, 111
HinP1I GCGC 2 cut(s) 109, 111
HincII GTYRAC 2 cut(s) 30, 103
HindII GTYRAC 2 cut(s) 30, 103
HinfI GANTC 3 cut(s) 128, 166, 249
HpaII CCGG 5 cut(s) 80, 161, 188, 255, 336
HphI GGTGA 3 cut(s) 55, 230, 350
Hpy166II GTNNAC 3 cut(s) 30, 63, 103
Hpy188III TCNNGA 3 cut(s) 39, 314, 331
Hpy8I GTNNAC 3 cut(s) 30, 63, 103
Hpy99I CGWCG 4 cut(s) 37, 40, 71, 107
HpyAV CCTTC 2 cut(s) 36, 301
HpyCH4III ACNGT 2 cut(s) 67, 395
HpyCH4IV ACGT 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 276
HpySE526I ACGT 1 cut(s) 35
Hsp92I GRCGYC 1 cut(s) 35
HspAI GCGC 2 cut(s) 109, 111
Kzo9I GATC 2 cut(s) 194, 220
LmnI GCTCC 1 cut(s) 403
Lsp1109I GCAGC 1 cut(s) 147
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 35
MalI GATC 2 cut(s) 196, 222
MboI GATC 2 cut(s) 194, 220
MboII GAAGA 3 cut(s) 17, 357, 400
MluCI AATT 1 cut(s) 175
MlyI GAGTC 3 cut(s) 122, 175, 243
MnlI CCTC 2 cut(s) 124, 331
MspI CCGG 5 cut(s) 80, 161, 188, 255, 336
MspR9I CCNGG 2 cut(s) 161, 256
MvnI CGCG 2 cut(s) 111, 367
NciI CCSGG 2 cut(s) 161, 256
NdeII GATC 2 cut(s) 194, 220
NlaIV GGNNCC 1 cut(s) 405
PalAI GGCGCGCC 1 cut(s) 109
PauI GCGCGC 1 cut(s) 109
PflFI GACNNNGTC 1 cut(s) 34
PinAI ACCGGT 1 cut(s) 335
PkrI GCNGC 1 cut(s) 137
PleI GAGTC 3 cut(s) 122, 174, 243
PpsI GAGTC 3 cut(s) 122, 174, 243
PpuMI RGGWCCY 1 cut(s) 45
Psp5II RGGWCCY 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 405
PspPI GGNCC 1 cut(s) 45
PspPPI RGGWCCY 1 cut(s) 45
PsyI GACNNNGTC 1 cut(s) 34
PteI GCGCGC 1 cut(s) 109
SalI GTCGAC 1 cut(s) 101
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 2 cut(s) 194, 220
Sau96I GGNCC 1 cut(s) 45
SchI GAGTC 3 cut(s) 122, 175, 243
ScrFI CCNGG 2 cut(s) 161, 256
SetI ASST 6 cut(s) 38, 47, 140, 312, 323, 380
SfcI CTRYAG 1 cut(s) 324
SgsI GGCGCGCC 1 cut(s) 109
SinI GGWCC 1 cut(s) 45
SmlI CTYRAG 2 cut(s) 314, 373
SmoI CTYRAG 2 cut(s) 314, 373
Sse9I AATT 1 cut(s) 175
SsiI CCGC 2 cut(s) 125, 170
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 2 cut(s) 159, 254
StyI CCWWGG 1 cut(s) 353
TaaI ACNGT 2 cut(s) 67, 395
TaiI ACGT 1 cut(s) 38
TaqI TCGA 6 cut(s) 38, 69, 102, 197, 284, 330
TasI AATT 1 cut(s) 175
TseI GCWGC 1 cut(s) 135
TspDTI ATGAA 1 cut(s) 144
TspGWI ACGGA 2 cut(s) 101, 261
Tth111I GACNNNGTC 1 cut(s) 34
VpaK11BI GGWCC 1 cut(s) 45
XapI RAATTY 1 cut(s) 175
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 1 cut(s) 122
ZraI GACGTC 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.