FvH4_6g18481

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Forward (+)
12230276 .. 12239325
9050 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18481.t1

Sequence Viewer

Length: 501 bp
ATGGCAGAAGATGGCGTCGGCGGCGTCTCGATCGAGGAGCATCAGCATCAACTTTGCCCGGAGAAGAAGTCCACGACGGTCTCAGATCTGATCAGATCAAACATCTCTCTCTCTCTCCACCGGCCCTTCCTGTGCCGGAGAGCACACAACGATGATGGTGGAGAGATGTTGGGAGAGATCTCCTCTCATCATGCTTCGATCTGCTTCACTGTAGATCAACGATCCGCCACCACCGTCCCCATCGACTCCAGCGGTGAAGTTTCCGGCCACTCAACGACTCCATGTAGCTTATGGATTTCAAGTTTTCTGGCGAGATCACCAAAAACTTCAAACAAGATCAATCTCGCCGGAAAACTGGAAAATAACGAACTCGCCGGGGAGGGAAAGTGGTCGGGGACGCTGCTGGAGTCTTTTGCGGTGGAGGGCGCCGTCGTCGGAGCCGGAGGGTGGAGAACGGACGGACGTCCGCACTTTAAGCCGAGTGCGGACGTCCGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

17.8

Weight (kDa)

6.04

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 466, 492
AccB1I GGYRCC 1 cut(s) 425
AciI CCGC 7 cut(s) 21, 225, 252, 416, 467, 485, 493
AclWI GGATC 1 cut(s) 216
AcoI YGGCCR 1 cut(s) 265
AcyI GRCGYC 5 cut(s) 15, 24, 426, 463, 489
AfiI CCNNNNNNNGG 1 cut(s) 447
AgsI TTSAA 2 cut(s) 300, 330
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw21I GWGCWC 1 cut(s) 145
Alw26I GTCTC 2 cut(s) 31, 85
AlwI GGATC 1 cut(s) 216
AoxI GGCC 2 cut(s) 122, 265
ApeKI GCWGC 1 cut(s) 400
AspLEI GCGC 1 cut(s) 428
AspS9I GGNCC 1 cut(s) 123
AsuC2I CCSGG 2 cut(s) 59, 376
AsuHPI GGTGA 2 cut(s) 266, 309
BanI GGYRCC 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 145
BbvI GCAGC 1 cut(s) 387
BccI CCATC 3 cut(s) 5, 149, 248
BceAI ACGGC 1 cut(s) 413
BclI TGATCA 1 cut(s) 90
BcnI CCSGG 2 cut(s) 59, 376
BcoDI GTCTC 2 cut(s) 31, 85
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 429
BglII AGATCT 2 cut(s) 85, 177
BisI GCNGC 2 cut(s) 22, 401
BlsI GCNGC 2 cut(s) 23, 402
Bme1390I CCNGG 2 cut(s) 59, 376
BmgT120I GGNCC 1 cut(s) 123
BmiI GGNNCC 2 cut(s) 427, 439
BmrFI CCNGG 2 cut(s) 59, 376
BmsI GCATC 2 cut(s) 49, 55
BoxI GACNNNNGTC 1 cut(s) 462
BplI GAGNNNNNCTC 2 cut(s) 167, 199
BpmI CTGGAG 2 cut(s) 232, 425
BpuMI CCSGG 2 cut(s) 59, 376
BsaHI GRCGYC 5 cut(s) 15, 24, 426, 463, 489
BsaI GGTCTC 1 cut(s) 85
BsaJI CCNNGG 1 cut(s) 375
BsaXI ACNNNNNCTCC 4 cut(s) 53, 83, 371, 401
Bsc4I CCNNNNNNNGG 1 cut(s) 447
Bse118I RCCGGY 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 360
BseDI CCNNGG 1 cut(s) 375
BseLI CCNNNNNNNGG 1 cut(s) 447
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 1 cut(s) 360
BseRI GAGGAG 2 cut(s) 50, 172
BseXI GCAGC 1 cut(s) 387
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 2 cut(s) 124, 267
BshNI GGYRCC 1 cut(s) 425
BsiEI CGRYCG 1 cut(s) 33
BsiHKAI GWGCWC 1 cut(s) 145
BsiSI CCGG 7 cut(s) 59, 121, 136, 264, 348, 375, 441
BslFI GGGAC 2 cut(s) 221, 409
BslI CCNNNNNNNGG 1 cut(s) 447
BsmAI GTCTC 2 cut(s) 31, 85
BsmBI CGTCTC 1 cut(s) 31
BsmFI GGGAC 2 cut(s) 221, 409
BsnI GGCC 2 cut(s) 124, 267
Bso31I GGTCTC 1 cut(s) 85
Bsp1286I GDGCHC 1 cut(s) 145
BspACI CCGC 7 cut(s) 21, 225, 252, 416, 467, 485, 493
BspANI GGCC 2 cut(s) 124, 267
BspCNI CTCAG 1 cut(s) 95
BspLI GGNNCC 2 cut(s) 427, 439
BspPI GGATC 1 cut(s) 216
BspT107I GGYRCC 1 cut(s) 425
BspTNI GGTCTC 1 cut(s) 85
BsrFI RCCGGY 1 cut(s) 120
BsrI ACTGG 1 cut(s) 360
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 1 cut(s) 375
BssNI GRCGYC 5 cut(s) 15, 24, 426, 463, 489
Bst4CI ACNGT 3 cut(s) 79, 211, 235
BstACI GRCGYC 5 cut(s) 15, 24, 426, 463, 489
BstDEI CTNAG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 429
BstHHI GCGC 1 cut(s) 428
BstMAI GTCTC 2 cut(s) 31, 85
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 2 cut(s) 21, 475
BstPAI GACNNNNGTC 1 cut(s) 462
BstSCI CCNGG 2 cut(s) 57, 374
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 387
BstX2I RGATCY 2 cut(s) 85, 177
BstYI RGATCY 2 cut(s) 85, 177
BsuRI GGCC 2 cut(s) 124, 267
BtsIMutI CAGTG 1 cut(s) 207
CfoI GCGC 1 cut(s) 428
Cfr10I RCCGGY 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 123
CseI GACGC 3 cut(s) 4, 13, 406
CviAII CATG 2 cut(s) 191, 282
CviJI RGCY 5 cut(s) 124, 267, 288, 440, 478
CviKI_1 RGCY 5 cut(s) 124, 267, 288, 440, 478
DdeI CTNAG 1 cut(s) 82
DinI GGCGCC 1 cut(s) 427
EaeI YGGCCR 1 cut(s) 265
EciI GGCGGA 1 cut(s) 214
Eco31I GGTCTC 1 cut(s) 85
EgeI GGCGCC 1 cut(s) 427
EheI GGCGCC 1 cut(s) 427
Esp3I CGTCTC 1 cut(s) 31
FaeI CATG 2 cut(s) 194, 285
FaiI YATR 3 cut(s) 192, 283, 292
FaqI GGGAC 2 cut(s) 221, 409
FatI CATG 2 cut(s) 190, 281
FbaI TGATCA 1 cut(s) 90
Fnu4HI GCNGC 2 cut(s) 22, 401
Fsp4HI GCNGC 2 cut(s) 22, 401
GlaI GCGC 1 cut(s) 427
GluI GCNGC 2 cut(s) 22, 401
GsuI CTGGAG 2 cut(s) 232, 425
HaeII RGCGCY 1 cut(s) 429
HaeIII GGCC 2 cut(s) 124, 267
HapII CCGG 7 cut(s) 59, 121, 136, 264, 348, 375, 441
HgaI GACGC 3 cut(s) 4, 13, 406
HhaI GCGC 1 cut(s) 428
Hin1I GRCGYC 5 cut(s) 15, 24, 426, 463, 489
Hin1II CATG 2 cut(s) 194, 285
Hin6I GCGC 1 cut(s) 426
HinP1I GCGC 1 cut(s) 426
HinfI GANTC 3 cut(s) 245, 277, 407
HpaII CCGG 7 cut(s) 59, 121, 136, 264, 348, 375, 441
HphI GGTGA 2 cut(s) 266, 309
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 4 cut(s) 85, 90, 95, 437
Hpy188III TCNNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 72
Hpy99I CGWCG 4 cut(s) 20, 79, 434, 437
HpyAV CCTTC 1 cut(s) 136
HpyCH4III ACNGT 3 cut(s) 79, 211, 235
HpyCH4IV ACGT 2 cut(s) 463, 489
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 475
HpyF3I CTNAG 1 cut(s) 82
HpySE526I ACGT 2 cut(s) 463, 489
Hsp92I GRCGYC 5 cut(s) 15, 24, 426, 463, 489
Hsp92II CATG 2 cut(s) 194, 285
HspAI GCGC 1 cut(s) 426
KasI GGCGCC 1 cut(s) 425
Ksp22I TGATCA 1 cut(s) 90
LmnI GCTCC 2 cut(s) 37, 437
Lsp1109I GCAGC 1 cut(s) 387
LweI GCATC 2 cut(s) 49, 55
MaeII ACGT 2 cut(s) 463, 489
MboII GAAGA 2 cut(s) 20, 76
MflI RGATCY 2 cut(s) 85, 177
MhlI GDGCHC 1 cut(s) 145
Mly113I GGCGCC 1 cut(s) 426
MlyI GAGTC 3 cut(s) 239, 271, 416
MmeI TCCRAC 1 cut(s) 415
MnlI CCTC 5 cut(s) 28, 193, 373, 415, 437
MseI TTAA 1 cut(s) 474
MslI CAYNNNNRTG 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 252
MspI CCGG 7 cut(s) 59, 121, 136, 264, 348, 375, 441
MspR9I CCNGG 2 cut(s) 59, 376
MwoI GCNNNNNNNGC 2 cut(s) 21, 475
NarI GGCGCC 1 cut(s) 426
NciI CCSGG 2 cut(s) 59, 376
NlaIII CATG 2 cut(s) 194, 285
NlaIV GGNNCC 2 cut(s) 427, 439
PkrI GCNGC 2 cut(s) 23, 402
Ple19I CGATCG 1 cut(s) 33
PleI GAGTC 3 cut(s) 239, 271, 415
PluTI GGCGCC 1 cut(s) 429
PpsI GAGTC 3 cut(s) 239, 271, 415
PshAI GACNNNNGTC 1 cut(s) 462
PspN4I GGNNCC 2 cut(s) 427, 439
PspPI GGNCC 1 cut(s) 123
PsuI RGATCY 2 cut(s) 85, 177
PvuI CGATCG 1 cut(s) 33
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 2 cut(s) 22, 401
Sau96I GGNCC 1 cut(s) 123
SchI GAGTC 3 cut(s) 239, 271, 416
ScrFI CCNGG 2 cut(s) 59, 376
SduI GDGCHC 1 cut(s) 145
SetI ASST 3 cut(s) 290, 466, 492
SfaNI GCATC 2 cut(s) 49, 55
SfcI CTRYAG 1 cut(s) 210
SfoI GGCGCC 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 150
SsiI CCGC 7 cut(s) 21, 225, 252, 416, 467, 485, 493
SspDI GGCGCC 1 cut(s) 425
StyD4I CCNGG 2 cut(s) 57, 374
TaaI ACNGT 3 cut(s) 79, 211, 235
TaiI ACGT 2 cut(s) 466, 492
TaqI TCGA 4 cut(s) 29, 33, 197, 243
TauI GCSGC 1 cut(s) 24
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 1 cut(s) 214
TseI GCWGC 1 cut(s) 400
TspGWI ACGGA 2 cut(s) 470, 474
TspRI CASTG 1 cut(s) 214
XcmI CCANNNNNNNNNTGG 1 cut(s) 288
ZraI GACGTC 2 cut(s) 464, 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.