FvH4_6g00640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000118
Physical Location & Seq
Forward (+)
365938 .. 368043
2106 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00640.t1

Sequence Viewer

Length: 639 bp
ATGGCTATATCTACCTTTAAAATTAAAATTACACTCAGTTTCTTAGCCAGAAAGAAGGCATATGAAGATGATAATACTAGTGGAAATAGCCCTACTTGTGATACCCACACCAATTCCAAAAGGGGCACCGGGGCCTATGCATTTACTGAGGTTGTTGCCCAGAGCTCCGATTCCGATCTCCTTGACCTTCTTTTTCATGTCAACGCCGTCCCAGAAGCCTCTACTGTTCATCCGGCAAGAGAAACGCAGCATTCAAATTTTCGCCCTCCGATTCGTGATCGCCCTCTGGTGATTCCTTCCGCCAAGGAACCCTCACAGCCTGTTTTGATTGCAGCAGTCCAACTCTCACAAACTCTCTCCTTCCCAGAGGGCAGTACAAACTCTCTCCAGAGGGCGATTCCTTCCGCCAAGGAACCCTCACAACCTGTTTTGATTGCAGCAGTCCAACTCTCACAAACTCTCTCCTTCCCTGTCGCTCACAGCTCCCCCAACCGTCCGCCCGCCTGCCGGATTCCGGTTCTCCGCCAGCCGGGTCGGGTCGGGGTGGTGGTATGGTGGCGGGTTTTACCGGATGATTCATCTCCGGCGAAGGCAGCGGTTTTATCGAGATCTTCCCCTTCTTCCGCGACCGCGACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

213

Amino Acids

22.73

Weight (kDa)

9.51

Isoelectric Point (pI)

60.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 125
AccII CGCG 2 cut(s) 626, 632
AciI CCGC 9 cut(s) 300, 405, 497, 501, 523, 559, 596, 624, 630
AcsI RAATTY 1 cut(s) 256
AfaI GTAC 1 cut(s) 376
AfiI CCNNNNNNNGG 3 cut(s) 507, 514, 529
AgsI TTSAA 1 cut(s) 255
AhlI ACTAGT 1 cut(s) 77
AluBI AGCT 2 cut(s) 165, 483
AluI AGCT 2 cut(s) 165, 483
Alw21I GWGCWC 1 cut(s) 167
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 4 cut(s) 247, 332, 437, 593
ApoI RAATTY 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 132
AsuC2I CCSGG 2 cut(s) 130, 531
AsuHPI GGTGA 1 cut(s) 301
BaeGI GKGCMC 1 cut(s) 128
BanI GGYRCC 1 cut(s) 125
BanII GRGCYC 1 cut(s) 167
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 4 cut(s) 259, 344, 449, 605
BceAI ACGGC 1 cut(s) 191
BcnI CCSGG 2 cut(s) 130, 531
BcuI ACTAGT 1 cut(s) 77
BfaI CTAG 2 cut(s) 78, 637
BglII AGATCT 1 cut(s) 608
BisI GCNGC 4 cut(s) 248, 333, 438, 594
BlsI GCNGC 4 cut(s) 249, 334, 439, 595
Bme1390I CCNGG 2 cut(s) 130, 531
BmgT120I GGNCC 1 cut(s) 132
BmiI GGNNCC 4 cut(s) 127, 133, 309, 414
BmrFI CCNGG 2 cut(s) 130, 531
BpmI CTGGAG 1 cut(s) 371
BpuMI CCSGG 2 cut(s) 130, 531
BsaBI GATNNNNATC 1 cut(s) 174
BsaJI CCNNGG 3 cut(s) 129, 303, 408
BsaWI WCCGGW 2 cut(s) 514, 568
Bsc4I CCNNNNNNNGG 3 cut(s) 507, 514, 529
Bse8I GATNNNNATC 1 cut(s) 174
BseDI CCNNGG 3 cut(s) 129, 303, 408
BseGI GGATG 2 cut(s) 229, 577
BseJI GATNNNNATC 1 cut(s) 174
BseLI CCNNNNNNNGG 3 cut(s) 507, 514, 529
BseMII CTCAG 2 cut(s) 49, 138
BseSI GKGCMC 1 cut(s) 128
BseXI GCAGC 4 cut(s) 259, 344, 449, 605
Bsh1236I CGCG 2 cut(s) 626, 632
Bsh1285I CGRYCG 1 cut(s) 630
BshFI GGCC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 125
BsiEI CGRYCG 1 cut(s) 630
BsiHKAI GWGCWC 1 cut(s) 167
BsiSI CCGG 7 cut(s) 129, 233, 508, 515, 530, 569, 584
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 3 cut(s) 507, 514, 529
BsmFI GGGAC 1 cut(s) 194
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 1 cut(s) 134
Bsp1286I GDGCHC 2 cut(s) 128, 167
Bsp143I GATC 3 cut(s) 175, 277, 608
BspACI CCGC 9 cut(s) 300, 405, 497, 501, 523, 559, 596, 624, 630
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 2 cut(s) 48, 139
BspFNI CGCG 2 cut(s) 626, 632
BspLI GGNNCC 4 cut(s) 127, 133, 309, 414
BspT107I GGYRCC 1 cut(s) 125
BssECI CCNNGG 3 cut(s) 129, 303, 408
BssMI GATC 3 cut(s) 175, 277, 608
BssT1I CCWWGG 2 cut(s) 303, 408
Bst4CI ACNGT 2 cut(s) 226, 494
BstC8I GCNNGC 3 cut(s) 501, 505, 527
BstDEI CTNAG 3 cut(s) 35, 43, 147
BstF5I GGATG 2 cut(s) 229, 577
BstFNI CGCG 2 cut(s) 626, 632
BstKTI GATC 3 cut(s) 178, 280, 611
BstMBI GATC 3 cut(s) 175, 277, 608
BstMCI CGRYCG 1 cut(s) 630
BstMWI GCNNNNNNNGC 1 cut(s) 593
BstSCI CCNGG 2 cut(s) 128, 529
BstSLI GKGCMC 1 cut(s) 128
BstUI CGCG 2 cut(s) 626, 632
BstV1I GCAGC 4 cut(s) 259, 344, 449, 605
BstX2I RGATCY 1 cut(s) 608
BstYI RGATCY 1 cut(s) 608
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 2 cut(s) 229, 577
Cac8I GCNNGC 3 cut(s) 501, 505, 527
Cfr13I GGNCC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 375
CviAII CATG 1 cut(s) 197
CviJI RGCY 9 cut(s) 5, 47, 90, 134, 165, 218, 319, 483, 529
CviKI_1 RGCY 9 cut(s) 5, 47, 90, 134, 165, 218, 319, 483, 529
CviQI GTAC 1 cut(s) 375
DdeI CTNAG 3 cut(s) 35, 43, 147
DpnI GATC 3 cut(s) 177, 279, 610
DpnII GATC 3 cut(s) 175, 277, 608
DraI TTTAAA 1 cut(s) 19
EciI GGCGGA 4 cut(s) 289, 394, 486, 512
Ecl136II GAGCTC 1 cut(s) 165
Eco130I CCWWGG 2 cut(s) 303, 408
Eco24I GRGCYC 1 cut(s) 167
Eco53kI GAGCTC 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 165
EcoO109I RGGNCCY 1 cut(s) 132
EcoT14I CCWWGG 2 cut(s) 303, 408
EcoT22I ATGCAT 1 cut(s) 142
EcoT38I GRGCYC 1 cut(s) 167
ErhI CCWWGG 2 cut(s) 303, 408
FaeI CATG 1 cut(s) 200
FaiI YATR 6 cut(s) 8, 61, 63, 138, 198, 553
FaqI GGGAC 1 cut(s) 194
FatI CATG 1 cut(s) 196
FauI CCCGC 2 cut(s) 508, 552
FauNDI CATATG 1 cut(s) 61
Fnu4HI GCNGC 4 cut(s) 248, 333, 438, 594
FokI GGATG 2 cut(s) 216, 584
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 4 cut(s) 248, 333, 438, 594
FspBI CTAG 2 cut(s) 78, 637
GluI GCNGC 4 cut(s) 248, 333, 438, 594
GsuI CTGGAG 1 cut(s) 371
HaeIII GGCC 1 cut(s) 134
HapII CCGG 7 cut(s) 129, 233, 508, 515, 530, 569, 584
Hin1II CATG 1 cut(s) 200
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HinfI GANTC 6 cut(s) 170, 271, 292, 397, 511, 575
HpaII CCGG 7 cut(s) 129, 233, 508, 515, 530, 569, 584
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 202
Hpy188I TCNGA 3 cut(s) 169, 175, 270
Hpy188III TCNNGA 3 cut(s) 275, 388, 606
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 8 cut(s) 49, 197, 306, 370, 411, 475, 583, 627
HpyCH4III ACNGT 2 cut(s) 226, 494
HpyCH4V TGCA 3 cut(s) 140, 332, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 593
HpyF3I CTNAG 3 cut(s) 35, 43, 147
Hsp92II CATG 1 cut(s) 200
Kzo9I GATC 3 cut(s) 175, 277, 608
LmnI GCTCC 2 cut(s) 170, 488
Lsp1109I GCAGC 4 cut(s) 259, 344, 449, 605
MaeI CTAG 2 cut(s) 78, 637
MalI GATC 3 cut(s) 177, 279, 610
MboI GATC 3 cut(s) 175, 277, 608
MboII GAAGA 3 cut(s) 77, 603, 612
MflI RGATCY 1 cut(s) 608
MhlI GDGCHC 2 cut(s) 128, 167
MluCI AATT 4 cut(s) 21, 27, 112, 256
MmeI TCCRAC 2 cut(s) 364, 469
MnlI CCTC 8 cut(s) 142, 229, 276, 294, 322, 361, 384, 427
Mph1103I ATGCAT 1 cut(s) 142
MseI TTAA 2 cut(s) 18, 24
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 7 cut(s) 129, 233, 508, 515, 530, 569, 584
MspR9I CCNGG 2 cut(s) 130, 531
Mva1269I GAATGC 1 cut(s) 250
MvnI CGCG 2 cut(s) 626, 632
MwoI GCNNNNNNNGC 1 cut(s) 593
NciI CCSGG 2 cut(s) 130, 531
NdeI CATATG 1 cut(s) 61
NdeII GATC 3 cut(s) 175, 277, 608
NlaIII CATG 1 cut(s) 200
NlaIV GGNNCC 4 cut(s) 127, 133, 309, 414
NsiI ATGCAT 1 cut(s) 142
PctI GAATGC 1 cut(s) 250
PfeI GAWTC 6 cut(s) 170, 271, 292, 397, 511, 575
PkrI GCNGC 4 cut(s) 249, 334, 439, 595
Psp124BI GAGCTC 1 cut(s) 167
PspN4I GGNNCC 4 cut(s) 127, 133, 309, 414
PspPI GGNCC 1 cut(s) 132
PsuI RGATCY 1 cut(s) 608
RsaI GTAC 1 cut(s) 376
RsaNI GTAC 1 cut(s) 375
SacI GAGCTC 1 cut(s) 167
SaqAI TTAA 2 cut(s) 18, 24
SatI GCNGC 4 cut(s) 248, 333, 438, 594
Sau3AI GATC 3 cut(s) 175, 277, 608
Sau96I GGNCC 1 cut(s) 132
ScrFI CCNGG 2 cut(s) 130, 531
SduI GDGCHC 2 cut(s) 128, 167
SetI ASST 7 cut(s) 17, 153, 167, 189, 427, 485, 638
SpeI ACTAGT 1 cut(s) 77
Sse9I AATT 4 cut(s) 21, 27, 112, 256
SsiI CCGC 9 cut(s) 300, 405, 497, 501, 523, 559, 596, 624, 630
SspMI CTAG 2 cut(s) 78, 637
SstI GAGCTC 1 cut(s) 167
StyD4I CCNGG 2 cut(s) 128, 529
StyI CCWWGG 2 cut(s) 303, 408
TaaI ACNGT 2 cut(s) 226, 494
TaqI TCGA 1 cut(s) 605
TasI AATT 4 cut(s) 21, 27, 112, 256
TatI WGTACW 1 cut(s) 374
TfiI GAWTC 6 cut(s) 170, 271, 292, 397, 511, 575
Tru1I TTAA 2 cut(s) 18, 24
Tru9I TTAA 2 cut(s) 18, 24
TseI GCWGC 4 cut(s) 247, 332, 437, 593
TspDTI ATGAA 4 cut(s) 78, 185, 218, 567
XapI RAATTY 1 cut(s) 256
XspI CTAG 2 cut(s) 78, 637
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.