RLG00000003077

F-box domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000118
Physical Location & Seq
Reverse (-)
44135063 .. 44135740
678 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003077

Sequence Viewer

Length: 489 bp
ATGTTCTACTCAGTTTTCAATGCTTCTCAATTCTTTAAATTGAGGTCATATCCTGGAAAGTTCAGCCAAAAAACAACTTTTCTCATAAGGTTATTTTCCTCCTGGAAGAACTTGGTGATGCATGATATTTCTATTCCTTCACTTTCGAATATCAAGCATTTAAAAATTGAATCGGATTCTCCTCTCAAAGCAAAAGAAAACTATGGAGCTCTTGTGGATGGCTTACTGTGGAGTTCTCTCCCGGAAACCCTTTCTATGGAATTGGGTTGGGGTTGCAACAATGAGGTTGCAAAGGTTTTGTACAAAAGACTTGGCAAGTTAGATCCAAGACAAGAATGCTGTAGTTCTGCACGTATTGATTGTTGGCACCATTGTCTGAAATATGTGCAATGTCTTGAGAATAACAAGGTAAAGAATATAAGTTACAACTCTATAGTGAAATCGTTGTCGTCAAATCTTAGGAATGGTCAGAAGATTATATGTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box LRR_2

Protein Analysis

163

Amino Acids

18.57

Weight (kDa)

9.36

Isoelectric Point (pI)

49.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 366
AclWI GGATC 1 cut(s) 317
AfaI GTAC 1 cut(s) 302
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 2 cut(s) 19, 170
AjnI CCWGG 2 cut(s) 52, 101
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Alw21I GWGCWC 1 cut(s) 211
AlwI GGATC 1 cut(s) 317
AsuC2I CCSGG 1 cut(s) 242
AsuHPI GGTGA 1 cut(s) 127
AsuII TTCGAA 1 cut(s) 146
BanI GGYRCC 1 cut(s) 366
BanII GRGCYC 1 cut(s) 211
Bbv12I GWGCWC 1 cut(s) 211
BccI CCATC 1 cut(s) 212
BciT130I CCWGG 2 cut(s) 54, 103
BcnI CCSGG 1 cut(s) 242
BfmI CTRYAG 2 cut(s) 340, 432
Bme1390I CCNGG 3 cut(s) 54, 103, 242
BmiI GGNNCC 1 cut(s) 368
BmrFI CCNGG 3 cut(s) 54, 103, 242
BmsI GCATC 1 cut(s) 108
Bpu14I TTCGAA 1 cut(s) 146
BpuEI CTTGAG 1 cut(s) 416
BpuMI CCSGG 1 cut(s) 242
BsaAI YACGTR 1 cut(s) 353
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 395
BseBI CCWGG 2 cut(s) 54, 103
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMI GCAATG 1 cut(s) 395
BseMII CTCAG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 171
BsgI GTGCAG 1 cut(s) 333
BshNI GGYRCC 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 211
BsiSI CCGG 1 cut(s) 242
BslI CCNNNNNNNGG 1 cut(s) 256
BsmI GAATGC 1 cut(s) 341
Bsp119I TTCGAA 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 211
Bsp1407I TGTACA 1 cut(s) 300
Bsp143I GATC 1 cut(s) 322
BspCNI CTCAG 1 cut(s) 23
BspLI GGNNCC 1 cut(s) 368
BspPI GGATC 1 cut(s) 317
BspT104I TTCGAA 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 366
BsrDI GCAATG 1 cut(s) 395
BsrGI TGTACA 1 cut(s) 300
BssMI GATC 1 cut(s) 322
Bst2UI CCWGG 2 cut(s) 54, 103
Bst4CI ACNGT 1 cut(s) 228
BstAUI TGTACA 1 cut(s) 300
BstBAI YACGTR 1 cut(s) 353
BstBI TTCGAA 1 cut(s) 146
BstDEI CTNAG 2 cut(s) 10, 458
BstF5I GGATG 1 cut(s) 223
BstKTI GATC 1 cut(s) 325
BstMBI GATC 1 cut(s) 322
BstNI CCWGG 2 cut(s) 54, 103
BstSCI CCNGG 3 cut(s) 52, 101, 240
BstSFI CTRYAG 2 cut(s) 340, 432
BstX2I RGATCY 1 cut(s) 322
BstYI RGATCY 1 cut(s) 322
BtsCI GGATG 1 cut(s) 223
Csp6I GTAC 1 cut(s) 301
CviAII CATG 1 cut(s) 122
CviJI RGCY 3 cut(s) 66, 209, 222
CviKI_1 RGCY 3 cut(s) 66, 209, 222
CviQI GTAC 1 cut(s) 301
DdeI CTNAG 2 cut(s) 10, 458
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
DraI TTTAAA 2 cut(s) 37, 162
Ecl136II GAGCTC 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 211
Eco53kI GAGCTC 1 cut(s) 209
EcoICRI GAGCTC 1 cut(s) 209
EcoRII CCWGG 2 cut(s) 52, 101
EcoT22I ATGCAT 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 211
FaeI CATG 1 cut(s) 125
FatI CATG 1 cut(s) 121
FokI GGATG 1 cut(s) 230
FriOI GRGCYC 1 cut(s) 211
HapII CCGG 1 cut(s) 242
Hin1II CATG 1 cut(s) 125
HinfI GANTC 2 cut(s) 170, 176
HpaII CCGG 1 cut(s) 242
HphI GGTGA 1 cut(s) 127
Hpy188I TCNGA 3 cut(s) 175, 378, 471
Hpy188III TCNNGA 1 cut(s) 395
HpyAV CCTTC 1 cut(s) 147
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4IV ACGT 1 cut(s) 352
HpyCH4V TGCA 5 cut(s) 121, 276, 290, 350, 388
HpyF3I CTNAG 2 cut(s) 10, 458
HpySE526I ACGT 1 cut(s) 352
Hsp92II CATG 1 cut(s) 125
Kzo9I GATC 1 cut(s) 322
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 5 cut(s) 39, 66, 88, 115, 255
LweI GCATC 1 cut(s) 108
MaeII ACGT 1 cut(s) 352
MaeIII GTNAC 1 cut(s) 422
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 2 cut(s) 118, 484
MflI RGATCY 1 cut(s) 322
MhlI GDGCHC 1 cut(s) 211
MluCI AATT 4 cut(s) 29, 38, 165, 260
MnlI CCTC 4 cut(s) 36, 109, 192, 277
Mph1103I ATGCAT 1 cut(s) 123
MseI TTAA 2 cut(s) 36, 161
MspI CCGG 1 cut(s) 242
MspR9I CCNGG 3 cut(s) 54, 103, 242
Mva1269I GAATGC 1 cut(s) 341
MvaI CCWGG 2 cut(s) 54, 103
NciI CCSGG 1 cut(s) 242
NdeII GATC 1 cut(s) 322
NlaIII CATG 1 cut(s) 125
NlaIV GGNNCC 1 cut(s) 368
NsiI ATGCAT 1 cut(s) 123
NspV TTCGAA 1 cut(s) 146
PctI GAATGC 1 cut(s) 341
PfeI GAWTC 2 cut(s) 170, 176
PfoI TCCNGGA 3 cut(s) 52, 101, 240
Ppu21I YACGTR 1 cut(s) 353
Psp124BI GAGCTC 1 cut(s) 211
Psp6I CCWGG 2 cut(s) 52, 101
PspGI CCWGG 2 cut(s) 52, 101
PspN4I GGNNCC 1 cut(s) 368
PsuI RGATCY 1 cut(s) 322
RsaI GTAC 1 cut(s) 302
RsaNI GTAC 1 cut(s) 301
SacI GAGCTC 1 cut(s) 211
SaqAI TTAA 2 cut(s) 36, 161
Sau3AI GATC 1 cut(s) 322
ScrFI CCNGG 3 cut(s) 54, 103, 242
SduI GDGCHC 1 cut(s) 211
SetI ASST 7 cut(s) 47, 92, 211, 288, 297, 355, 411
SfaNI GCATC 1 cut(s) 108
SfcI CTRYAG 2 cut(s) 340, 432
SfuI TTCGAA 1 cut(s) 146
SmlI CTYRAG 1 cut(s) 395
SmoI CTYRAG 1 cut(s) 395
Sse9I AATT 4 cut(s) 29, 38, 165, 260
SstI GAGCTC 1 cut(s) 211
StyD4I CCNGG 3 cut(s) 52, 101, 240
TaaI ACNGT 1 cut(s) 228
TaiI ACGT 1 cut(s) 355
TaqI TCGA 1 cut(s) 146
TasI AATT 4 cut(s) 29, 38, 165, 260
TatI WGTACW 1 cut(s) 300
TfiI GAWTC 2 cut(s) 170, 176
Tru1I TTAA 2 cut(s) 36, 161
Tru9I TTAA 2 cut(s) 36, 161
Zsp2I ATGCAT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.