FvH4_3g27862

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000118
Physical Location & Seq
Forward (+)
20901124 .. 20902672
1549 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27862.t1

Sequence Viewer

Length: 468 bp
ATGAACAAAAAAGAGATTCATCAATGGAAGGGCCCTGCATACACATATGCGTCGTTGTCAAAAGTCAAAACACATGACTCGTCCGACAACCTTGTCTTTGTGACGACATCGTCGGACGAGCCAGAATATATCAAATGGTCTGTAACAGTTGGTTGCCCATTCAAAGTGAAGGTGGAGTCTTGGCTTTGCTGCATTGTTCGCATAGAGCGCTGGCGAGGGCGCGCCTCCACCCCAGCAGACTCCAGGAGCTTCCCCGACCACTTTCCATCCCAGGCGAGTCCGCCAAATTCCAGTTTTCCGGCCAAATTGACTTTGTTTGAAGTTTTGGGTGATCTGGCCGGAAAACTGGAATTCGGCGGACTCGTCGGGGATAGAAAGTGGTCGGGGAAGCTGCTGGAGTCCGTCGGGGTGGAGGCACGCCCTCGCCAGTGCCGTACGGTGGAAAACGGAGGGAAATCCGTACCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

17.22

Weight (kDa)

9.1

Isoelectric Point (pI)

43.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000118)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01361 FvH4_1g07161 FvH4_1g07431 FvH4_1g07821 FvH4_1g08223 FvH4_1g10041 FvH4_1g12132 FvH4_1g15053 FvH4_1g18161 FvH4_1g18400 FvH4_1g18931 FvH4_1g19242 FvH4_1g19461 FvH4_1g20550 FvH4_1g21381 FvH4_1g21542 FvH4_1g22102 FvH4_1g23991 FvH4_1g24542 FvH4_1g24951 FvH4_1g24960 FvH4_1g25272 FvH4_1g25552 FvH4_1g25771 FvH4_1g28771 FvH4_1g29201 FvH4_1g29611 FvH4_2g01181 FvH4_2g02491 FvH4_2g04621 FvH4_2g04631 FvH4_2g07460 FvH4_2g08540 FvH4_2g08550 FvH4_2g09292 FvH4_2g10501 FvH4_2g12101 FvH4_2g12220 FvH4_2g12551 FvH4_2g14071 FvH4_2g14241 FvH4_2g15041 FvH4_2g15311 FvH4_2g18971 FvH4_2g19220 FvH4_2g19260 FvH4_2g19611 FvH4_2g19652 FvH4_2g20211 FvH4_2g20231 FvH4_2g21541 FvH4_2g22380 FvH4_2g27712 FvH4_2g28171 FvH4_2g29879 FvH4_2g32391 FvH4_3g02171 FvH4_3g05531 FvH4_3g09750 FvH4_3g10310 FvH4_3g10460 FvH4_3g13172 FvH4_3g15232 FvH4_3g18481 FvH4_3g18621 FvH4_3g20504 FvH4_3g20812 FvH4_3g22320 FvH4_3g22930 FvH4_3g22940 FvH4_3g23752 FvH4_3g24791 FvH4_3g26411 FvH4_3g26432 FvH4_3g27201 FvH4_3g27862 FvH4_3g28871 FvH4_3g28954 FvH4_3g29131 FvH4_3g29832 FvH4_3g29922 FvH4_3g30190 FvH4_3g32231 FvH4_3g32250 FvH4_3g33460 FvH4_3g34670 FvH4_3g36982 FvH4_3g37001 FvH4_3g38252 FvH4_3g38772 FvH4_3g40141 FvH4_3g40181 FvH4_3g42521 FvH4_4g00090 FvH4_4g00290 FvH4_4g00301 FvH4_4g00530 FvH4_4g00823 FvH4_4g02300 FvH4_4g02450 FvH4_4g03360 FvH4_4g04481 FvH4_4g04761 FvH4_4g06301 FvH4_4g06630 FvH4_4g08312 FvH4_4g08552 FvH4_4g10053 FvH4_4g11971 FvH4_4g13211 FvH4_4g13511 FvH4_4g15351 FvH4_4g16360 FvH4_4g16601 FvH4_4g18462 FvH4_4g22911 FvH4_4g23221 FvH4_4g24301 FvH4_4g24721 FvH4_4g27905 FvH4_4g28971 FvH4_4g29540 FvH4_4g30720 FvH4_4g31521 FvH4_4g33371 FvH4_4g34111 FvH4_4g35740 FvH4_5g00131 FvH4_5g02530 FvH4_5g02550 FvH4_5g02560 FvH4_5g02580 FvH4_5g03783 FvH4_5g05681 FvH4_5g05681 FvH4_5g09371 FvH4_5g09381 FvH4_5g14611 FvH4_5g15341 FvH4_5g19801 FvH4_5g20110 FvH4_5g20911 FvH4_5g22230 FvH4_5g25751 FvH4_5g26070 FvH4_5g26471 FvH4_5g27072 FvH4_5g27471 FvH4_5g27471 FvH4_5g27998 FvH4_5g28291 FvH4_5g30951 FvH4_5g31082 FvH4_5g31890 FvH4_5g32251 FvH4_5g34112 FvH4_5g37184 FvH4_5g37993 FvH4_5g38271 FvH4_6g00153 FvH4_6g00640 FvH4_6g05921 FvH4_6g08591 FvH4_6g09511 FvH4_6g10331 FvH4_6g10401 FvH4_6g14161 FvH4_6g14171 FvH4_6g18481 FvH4_6g19721 FvH4_6g19980 FvH4_6g20104 FvH4_6g20112 FvH4_6g21261 FvH4_6g21651 FvH4_6g22051 FvH4_6g23141 FvH4_6g24822 FvH4_6g25082 FvH4_6g25391 FvH4_6g25560 FvH4_6g26350 FvH4_6g27031 FvH4_6g27810 FvH4_6g27971 FvH4_6g28331 FvH4_6g29391 FvH4_6g30781 FvH4_6g32221 FvH4_6g34680 FvH4_6g36181 FvH4_6g36551 FvH4_6g37491 FvH4_6g37663 FvH4_6g39590 FvH4_6g40582 FvH4_6g43843 FvH4_6g50551 FvH4_7g00240 FvH4_7g00731 FvH4_7g01031 FvH4_7g03301 FvH4_7g08180 FvH4_7g08180 FvH4_7g10631 FvH4_7g19710 FvH4_7g23892 FvH4_7g25280 FvH4_7g25551 FvH4_7g30121 FvH4_7g31931 FvH4_7g32672 FvH4_c21g00040 FvH4_c2g00053
prunus_persica Prupe.1G448800_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0322451 RchiOBHm_Chr5g0015171
rosa_laevigata RLG00000003077 RLG00000018186 RLG00000030343
rosa_multiflora Rmu_co8096726.1_g000001
rosa_roxburghii Rroxscaffold_157G00438380 Rroxscaffold_1G00001730 Rroxscaffold_3G00236310
rosa_rugosa Rorug02G0236500
rosa_samantha Rh4BG247300 Rh6BG286200 Rh6CG287300 Rh7DG257500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 92, 109
AccII CGCG 1 cut(s) 222
AciI CCGC 2 cut(s) 281, 357
AcoI YGGCCR 2 cut(s) 300, 336
AcsI RAATTY 2 cut(s) 286, 350
AfaI GTAC 2 cut(s) 436, 462
AfeI AGCGCT 1 cut(s) 209
AfiI CCNNNNNNNGG 1 cut(s) 439
AgsI TTSAA 2 cut(s) 163, 320
AjnI CCWGG 2 cut(s) 242, 270
AluBI AGCT 2 cut(s) 249, 391
AluI AGCT 2 cut(s) 249, 391
Aor51HI AGCGCT 1 cut(s) 209
AoxI GGCC 3 cut(s) 31, 300, 336
ApaI GGGCCC 1 cut(s) 35
ApeKI GCWGC 2 cut(s) 189, 391
ApoI RAATTY 2 cut(s) 286, 350
AscI GGCGCGCC 1 cut(s) 220
AspLEI GCGC 3 cut(s) 210, 222, 224
AspS9I GGNCC 2 cut(s) 31, 32
AsuHPI GGTGA 1 cut(s) 341
BaeGI GKGCMC 1 cut(s) 35
BanII GRGCYC 1 cut(s) 35
BbvI GCAGC 2 cut(s) 176, 378
BccI CCATC 1 cut(s) 274
BceAI ACGGC 1 cut(s) 417
BciT130I CCWGG 2 cut(s) 244, 272
BfoI RGCGCY 1 cut(s) 211
BisI GCNGC 2 cut(s) 190, 392
BlsI GCNGC 2 cut(s) 191, 393
Bme1390I CCNGG 2 cut(s) 244, 272
BmgT120I GGNCC 2 cut(s) 31, 32
BmiI GGNNCC 1 cut(s) 33
BmrFI CCNGG 2 cut(s) 244, 272
BpmI CTGGAG 2 cut(s) 226, 416
BsaJI CCNNGG 1 cut(s) 270
Bsc4I CCNNNNNNNGG 1 cut(s) 439
Bse1I ACTGG 3 cut(s) 291, 351, 427
BseBI CCWGG 2 cut(s) 244, 272
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 266
BseLI CCNNNNNNNGG 1 cut(s) 439
BseNI ACTGG 3 cut(s) 291, 351, 427
BsePI GCGCGC 1 cut(s) 220
BseSI GKGCMC 1 cut(s) 35
BseXI GCAGC 2 cut(s) 176, 378
BseYI CCCAGC 1 cut(s) 232
Bsh1236I CGCG 1 cut(s) 222
BshFI GGCC 3 cut(s) 33, 302, 338
BsiSI CCGG 2 cut(s) 299, 339
BsiWI CGTACG 1 cut(s) 434
BslI CCNNNNNNNGG 1 cut(s) 439
BsnI GGCC 3 cut(s) 33, 302, 338
Bsp120I GGGCCC 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 331
BspACI CCGC 2 cut(s) 281, 357
BspANI GGCC 3 cut(s) 33, 302, 338
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 33
BsrI ACTGG 3 cut(s) 291, 351, 427
BssECI CCNNGG 1 cut(s) 270
BssHII GCGCGC 1 cut(s) 220
BssMI GATC 1 cut(s) 331
Bst2UI CCWGG 2 cut(s) 244, 272
Bst4CI ACNGT 3 cut(s) 148, 439, 465
BstC8I GCNNGC 3 cut(s) 212, 222, 418
BstF5I GGATG 1 cut(s) 266
BstFNI CGCG 1 cut(s) 222
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 3 cut(s) 210, 222, 224
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
BstMWI GCNNNNNNNGC 2 cut(s) 198, 207
BstNI CCWGG 2 cut(s) 244, 272
BstSCI CCNGG 2 cut(s) 242, 270
BstSLI GKGCMC 1 cut(s) 35
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 176, 378
BsuRI GGCC 3 cut(s) 33, 302, 338
BtsCI GGATG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 434
Cac8I GCNNGC 3 cut(s) 212, 222, 418
CfoI GCGC 3 cut(s) 210, 222, 224
Cfr13I GGNCC 2 cut(s) 31, 32
CseI GACGC 1 cut(s) 39
Csp6I GTAC 2 cut(s) 435, 461
CviAII CATG 1 cut(s) 74
CviJI RGCY 7 cut(s) 33, 121, 184, 249, 302, 338, 391
CviKI_1 RGCY 7 cut(s) 33, 121, 184, 249, 302, 338, 391
CviQI GTAC 2 cut(s) 435, 461
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
DrdI GACNNNNNNGTC 2 cut(s) 92, 109
DseDI GACNNNNNNGTC 2 cut(s) 92, 109
EaeI YGGCCR 2 cut(s) 300, 336
EciI GGCGGA 2 cut(s) 270, 372
Eco24I GRGCYC 1 cut(s) 35
Eco47III AGCGCT 1 cut(s) 209
EcoO109I RGGNCCY 2 cut(s) 31, 32
EcoRI GAATTC 1 cut(s) 350
EcoRII CCWGG 2 cut(s) 242, 270
EcoT38I GRGCYC 1 cut(s) 35
FaeI CATG 1 cut(s) 77
FaiI YATR 6 cut(s) 40, 46, 48, 75, 129, 203
FatI CATG 1 cut(s) 73
FauNDI CATATG 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 190, 392
FokI GGATG 1 cut(s) 253
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 2 cut(s) 190, 392
GlaI GCGC 3 cut(s) 209, 221, 223
GluI GCNGC 2 cut(s) 190, 392
GsaI CCCAGC 1 cut(s) 236
GsuI CTGGAG 2 cut(s) 226, 416
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 3 cut(s) 33, 302, 338
HapII CCGG 2 cut(s) 299, 339
HgaI GACGC 1 cut(s) 39
HhaI GCGC 3 cut(s) 210, 222, 224
Hin1II CATG 1 cut(s) 77
Hin6I GCGC 3 cut(s) 208, 220, 222
HinP1I GCGC 3 cut(s) 208, 220, 222
HinfI GANTC 7 cut(s) 16, 77, 176, 239, 277, 360, 398
HpaII CCGG 2 cut(s) 299, 339
HphI GGTGA 1 cut(s) 341
Hpy188I TCNGA 2 cut(s) 85, 115
Hpy99I CGWCG 4 cut(s) 55, 115, 368, 407
HpyAV CCTTC 2 cut(s) 22, 163
HpyCH4III ACNGT 3 cut(s) 148, 439, 465
HpyCH4V TGCA 2 cut(s) 38, 192
HpyF10VI GCNNNNNNNGC 2 cut(s) 198, 207
Hsp92II CATG 1 cut(s) 77
HspAI GCGC 3 cut(s) 208, 220, 222
Kzo9I GATC 1 cut(s) 331
LmnI GCTCC 1 cut(s) 246
Lsp1109I GCAGC 2 cut(s) 176, 378
MaeIII GTNAC 2 cut(s) 100, 142
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MhlI GDGCHC 1 cut(s) 35
MluCI AATT 3 cut(s) 286, 305, 350
MlyI GAGTC 6 cut(s) 71, 185, 233, 286, 354, 407
MmeI TCCRAC 2 cut(s) 93, 108
MnlI CCTC 5 cut(s) 209, 235, 406, 432, 443
MspI CCGG 2 cut(s) 299, 339
MspR9I CCNGG 2 cut(s) 244, 272
MvaI CCWGG 2 cut(s) 244, 272
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 198, 207
NdeI CATATG 1 cut(s) 46
NdeII GATC 1 cut(s) 331
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 1 cut(s) 33
NmuCI GTSAC 1 cut(s) 100
PalAI GGCGCGCC 1 cut(s) 220
PauI GCGCGC 1 cut(s) 220
PcsI WCGNNNNNNNCGW 2 cut(s) 360, 430
PfeI GAWTC 1 cut(s) 16
Pfl23II CGTACG 1 cut(s) 434
PflFI GACNNNGTC 1 cut(s) 109
PfoI TCCNGGA 1 cut(s) 242
PkrI GCNGC 2 cut(s) 191, 393
PleI GAGTC 6 cut(s) 71, 184, 233, 285, 354, 406
PpsI GAGTC 6 cut(s) 71, 184, 233, 285, 354, 406
Psp6I CCWGG 2 cut(s) 242, 270
PspFI CCCAGC 1 cut(s) 232
PspGI CCWGG 2 cut(s) 242, 270
PspLI CGTACG 1 cut(s) 434
PspN4I GGNNCC 1 cut(s) 33
PspOMI GGGCCC 1 cut(s) 31
PspPI GGNCC 2 cut(s) 31, 32
PsyI GACNNNGTC 1 cut(s) 109
PteI GCGCGC 1 cut(s) 220
RsaI GTAC 2 cut(s) 436, 462
RsaNI GTAC 2 cut(s) 435, 461
SatI GCNGC 2 cut(s) 190, 392
Sau3AI GATC 1 cut(s) 331
Sau96I GGNCC 2 cut(s) 31, 32
SchI GAGTC 6 cut(s) 71, 185, 233, 286, 354, 407
ScrFI CCNGG 2 cut(s) 244, 272
SduI GDGCHC 1 cut(s) 35
SetI ASST 4 cut(s) 93, 174, 251, 393
SgsI GGCGCGCC 1 cut(s) 220
Sse9I AATT 3 cut(s) 286, 305, 350
SsiI CCGC 2 cut(s) 281, 357
StyD4I CCNGG 2 cut(s) 242, 270
TaaI ACNGT 3 cut(s) 148, 439, 465
TasI AATT 3 cut(s) 286, 305, 350
TfiI GAWTC 1 cut(s) 16
TscAI CASTG 1 cut(s) 434
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 2 cut(s) 189, 391
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 2 cut(s) 8, 17
TspGWI ACGGA 3 cut(s) 391, 448, 462
TspRI CASTG 1 cut(s) 434
Tth111I GACNNNGTC 1 cut(s) 109
XapI RAATTY 2 cut(s) 286, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.